Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01700

Experiment: m.b. Cephalothin 0.005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01695 and CA264_01700 are separated by 26 nucleotidesCA264_01700 and CA264_01705 are separated by 157 nucleotides CA264_01695: CA264_01695 - glutathionylspermidine synthase, at 397,194 to 398,372 _01695 CA264_01700: CA264_01700 - type I methionyl aminopeptidase, at 398,399 to 399,157 _01700 CA264_01705: CA264_01705 - NADH-quinone oxidoreductase subunit H, at 399,315 to 400,418 _01705 Position (kb) 398 399 400Strain fitness (log2 ratio) -2 -1 0 1 2at 397.516 kb on + strand, within CA264_01695at 397.516 kb on + strand, within CA264_01695at 397.571 kb on + strand, within CA264_01695at 397.571 kb on + strand, within CA264_01695at 397.571 kb on + strand, within CA264_01695at 397.572 kb on - strand, within CA264_01695at 397.572 kb on - strand, within CA264_01695at 397.572 kb on - strand, within CA264_01695at 397.573 kb on + strand, within CA264_01695at 397.573 kb on + strand, within CA264_01695at 397.718 kb on - strand, within CA264_01695at 397.725 kb on + strand, within CA264_01695at 397.725 kb on + strand, within CA264_01695at 397.725 kb on + strand, within CA264_01695at 397.754 kb on + strand, within CA264_01695at 397.766 kb on + strand, within CA264_01695at 397.768 kb on + strand, within CA264_01695at 397.768 kb on + strand, within CA264_01695at 397.769 kb on - strand, within CA264_01695at 397.825 kb on + strand, within CA264_01695at 397.826 kb on - strand, within CA264_01695at 397.870 kb on + strand, within CA264_01695at 397.870 kb on + strand, within CA264_01695at 397.870 kb on + strand, within CA264_01695at 397.870 kb on + strand, within CA264_01695at 397.875 kb on - strand, within CA264_01695at 397.907 kb on + strand, within CA264_01695at 397.908 kb on - strand, within CA264_01695at 397.994 kb on - strand, within CA264_01695at 398.010 kb on + strand, within CA264_01695at 398.011 kb on - strand, within CA264_01695at 398.012 kb on + strand, within CA264_01695at 398.012 kb on + strand, within CA264_01695at 398.061 kb on + strand, within CA264_01695at 398.068 kb on - strand, within CA264_01695at 398.115 kb on + strand, within CA264_01695at 398.116 kb on - strandat 398.131 kb on - strand, within CA264_01695at 398.131 kb on - strand, within CA264_01695at 398.131 kb on - strand, within CA264_01695at 398.161 kb on + strand, within CA264_01695at 398.188 kb on + strand, within CA264_01695at 398.199 kb on + strand, within CA264_01695at 398.199 kb on + strand, within CA264_01695at 398.219 kb on - strand, within CA264_01695at 398.327 kb on + strandat 398.328 kb on - strandat 398.328 kb on - strandat 398.331 kb on - strandat 398.337 kb on - strandat 398.371 kb on - strandat 398.406 kb on + strandat 398.406 kb on + strandat 398.483 kb on + strand, within CA264_01700at 398.483 kb on + strand, within CA264_01700at 398.484 kb on - strand, within CA264_01700at 398.493 kb on + strand, within CA264_01700at 398.493 kb on + strand, within CA264_01700at 398.493 kb on + strand, within CA264_01700at 398.493 kb on + strand, within CA264_01700at 398.493 kb on + strand, within CA264_01700at 398.493 kb on + strand, within CA264_01700at 398.494 kb on - strand, within CA264_01700at 398.494 kb on - strand, within CA264_01700at 398.498 kb on - strand, within CA264_01700at 398.506 kb on + strand, within CA264_01700at 398.593 kb on + strand, within CA264_01700at 398.594 kb on - strand, within CA264_01700at 398.594 kb on - strand, within CA264_01700at 398.630 kb on - strand, within CA264_01700at 398.694 kb on + strand, within CA264_01700at 398.695 kb on - strand, within CA264_01700at 398.695 kb on - strand, within CA264_01700at 398.695 kb on - strand, within CA264_01700at 398.695 kb on - strand, within CA264_01700at 398.729 kb on - strand, within CA264_01700at 398.861 kb on - strand, within CA264_01700at 398.880 kb on + strand, within CA264_01700at 398.881 kb on - strand, within CA264_01700at 398.884 kb on + strand, within CA264_01700at 398.884 kb on + strand, within CA264_01700at 398.884 kb on + strand, within CA264_01700at 398.885 kb on - strand, within CA264_01700at 399.000 kb on + strand, within CA264_01700at 399.001 kb on - strand, within CA264_01700at 399.029 kb on + strand, within CA264_01700at 399.031 kb on + strand, within CA264_01700at 399.060 kb on + strand, within CA264_01700at 399.060 kb on + strand, within CA264_01700at 399.061 kb on - strand, within CA264_01700at 399.063 kb on + strand, within CA264_01700at 399.080 kb on + strand, within CA264_01700at 399.080 kb on + strand, within CA264_01700at 399.081 kb on - strand, within CA264_01700at 399.081 kb on - strand, within CA264_01700at 399.085 kb on - strandat 399.109 kb on + strandat 399.109 kb on + strandat 399.112 kb on - strandat 399.154 kb on - strandat 399.184 kb on + strandat 399.199 kb on - strandat 399.199 kb on - strandat 399.246 kb on - strandat 399.259 kb on + strandat 399.270 kb on + strandat 399.274 kb on + strandat 399.297 kb on + strandat 399.315 kb on - strandat 399.315 kb on - strandat 399.315 kb on - strandat 399.315 kb on - strandat 399.338 kb on - strandat 399.398 kb on + strandat 399.488 kb on + strand, within CA264_01705at 399.494 kb on - strand, within CA264_01705at 399.553 kb on + strand, within CA264_01705at 399.591 kb on - strand, within CA264_01705at 399.614 kb on - strand, within CA264_01705at 399.683 kb on + strand, within CA264_01705at 399.693 kb on + strand, within CA264_01705at 399.693 kb on + strand, within CA264_01705at 399.694 kb on - strand, within CA264_01705at 399.764 kb on - strand, within CA264_01705at 399.889 kb on + strand, within CA264_01705at 399.890 kb on - strand, within CA264_01705at 399.895 kb on + strand, within CA264_01705at 399.896 kb on - strand, within CA264_01705at 399.899 kb on + strand, within CA264_01705at 399.920 kb on + strand, within CA264_01705at 399.924 kb on - strand, within CA264_01705at 399.924 kb on - strand, within CA264_01705at 399.933 kb on - strand, within CA264_01705at 399.933 kb on - strand, within CA264_01705at 399.948 kb on - strand, within CA264_01705at 400.103 kb on + strand, within CA264_01705at 400.103 kb on + strand, within CA264_01705at 400.104 kb on - strand, within CA264_01705at 400.107 kb on - strand, within CA264_01705

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.005 mg/ml
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397,516 + CA264_01695 0.27 -0.3
397,516 + CA264_01695 0.27 -2.6
397,571 + CA264_01695 0.32 -1.6
397,571 + CA264_01695 0.32 +0.4
397,571 + CA264_01695 0.32 -0.0
397,572 - CA264_01695 0.32 -0.2
397,572 - CA264_01695 0.32 +0.6
397,572 - CA264_01695 0.32 +2.1
397,573 + CA264_01695 0.32 +0.2
397,573 + CA264_01695 0.32 -0.1
397,718 - CA264_01695 0.44 -0.4
397,725 + CA264_01695 0.45 +0.4
397,725 + CA264_01695 0.45 -1.1
397,725 + CA264_01695 0.45 +0.0
397,754 + CA264_01695 0.47 -0.6
397,766 + CA264_01695 0.49 +1.9
397,768 + CA264_01695 0.49 -0.4
397,768 + CA264_01695 0.49 -0.3
397,769 - CA264_01695 0.49 -0.2
397,825 + CA264_01695 0.54 -0.3
397,826 - CA264_01695 0.54 -1.2
397,870 + CA264_01695 0.57 -0.3
397,870 + CA264_01695 0.57 +0.3
397,870 + CA264_01695 0.57 +0.1
397,870 + CA264_01695 0.57 +0.6
397,875 - CA264_01695 0.58 -0.4
397,907 + CA264_01695 0.60 -1.6
397,908 - CA264_01695 0.61 -0.6
397,994 - CA264_01695 0.68 +0.1
398,010 + CA264_01695 0.69 +1.0
398,011 - CA264_01695 0.69 -0.8
398,012 + CA264_01695 0.69 -0.4
398,012 + CA264_01695 0.69 -0.8
398,061 + CA264_01695 0.74 -0.7
398,068 - CA264_01695 0.74 -0.1
398,115 + CA264_01695 0.78 +0.2
398,116 - +2.6
398,131 - CA264_01695 0.79 -1.2
398,131 - CA264_01695 0.79 -0.4
398,131 - CA264_01695 0.79 +0.0
398,161 + CA264_01695 0.82 -0.7
398,188 + CA264_01695 0.84 -0.6
398,199 + CA264_01695 0.85 +0.7
398,199 + CA264_01695 0.85 +1.6
398,219 - CA264_01695 0.87 -1.7
398,327 + -0.5
398,328 - +2.6
398,328 - -0.8
398,331 - -0.5
398,337 - -0.2
398,371 - -0.7
398,406 + -1.2
398,406 + +0.2
398,483 + CA264_01700 0.11 -0.2
398,483 + CA264_01700 0.11 -0.1
398,484 - CA264_01700 0.11 -0.6
398,493 + CA264_01700 0.12 -1.8
398,493 + CA264_01700 0.12 +0.6
398,493 + CA264_01700 0.12 +0.0
398,493 + CA264_01700 0.12 +0.3
398,493 + CA264_01700 0.12 +0.9
398,493 + CA264_01700 0.12 +0.5
398,494 - CA264_01700 0.13 -0.2
398,494 - CA264_01700 0.13 -0.9
398,498 - CA264_01700 0.13 -0.1
398,506 + CA264_01700 0.14 -0.2
398,593 + CA264_01700 0.26 +0.2
398,594 - CA264_01700 0.26 +0.1
398,594 - CA264_01700 0.26 +1.4
398,630 - CA264_01700 0.30 +0.2
398,694 + CA264_01700 0.39 -0.3
398,695 - CA264_01700 0.39 -0.1
398,695 - CA264_01700 0.39 -0.6
398,695 - CA264_01700 0.39 -0.1
398,695 - CA264_01700 0.39 -0.7
398,729 - CA264_01700 0.43 -0.5
398,861 - CA264_01700 0.61 +1.1
398,880 + CA264_01700 0.63 -0.4
398,881 - CA264_01700 0.64 -0.1
398,884 + CA264_01700 0.64 -0.2
398,884 + CA264_01700 0.64 +0.4
398,884 + CA264_01700 0.64 -0.4
398,885 - CA264_01700 0.64 +2.6
399,000 + CA264_01700 0.79 -1.3
399,001 - CA264_01700 0.79 -0.5
399,029 + CA264_01700 0.83 -1.0
399,031 + CA264_01700 0.83 -0.3
399,060 + CA264_01700 0.87 +0.0
399,060 + CA264_01700 0.87 -0.6
399,061 - CA264_01700 0.87 -0.2
399,063 + CA264_01700 0.87 -0.6
399,080 + CA264_01700 0.90 -0.4
399,080 + CA264_01700 0.90 -2.2
399,081 - CA264_01700 0.90 -0.6
399,081 - CA264_01700 0.90 -0.3
399,085 - -0.3
399,109 + -0.5
399,109 + +0.2
399,112 - -0.6
399,154 - +0.5
399,184 + -1.4
399,199 - -2.0
399,199 - +0.1
399,246 - -0.2
399,259 + -0.8
399,270 + -1.3
399,274 + -0.1
399,297 + +0.6
399,315 - +0.2
399,315 - -1.0
399,315 - -0.3
399,315 - +0.3
399,338 - +0.3
399,398 + -0.5
399,488 + CA264_01705 0.16 -1.6
399,494 - CA264_01705 0.16 -2.3
399,553 + CA264_01705 0.22 -1.9
399,591 - CA264_01705 0.25 +1.3
399,614 - CA264_01705 0.27 -1.7
399,683 + CA264_01705 0.33 -1.4
399,693 + CA264_01705 0.34 -1.4
399,693 + CA264_01705 0.34 -1.2
399,694 - CA264_01705 0.34 -1.9
399,764 - CA264_01705 0.41 -1.6
399,889 + CA264_01705 0.52 -0.3
399,890 - CA264_01705 0.52 -0.2
399,895 + CA264_01705 0.53 +0.2
399,896 - CA264_01705 0.53 -1.6
399,899 + CA264_01705 0.53 -2.3
399,920 + CA264_01705 0.55 -0.7
399,924 - CA264_01705 0.55 -2.6
399,924 - CA264_01705 0.55 +0.6
399,933 - CA264_01705 0.56 +0.5
399,933 - CA264_01705 0.56 -0.6
399,948 - CA264_01705 0.57 -1.4
400,103 + CA264_01705 0.71 -0.6
400,103 + CA264_01705 0.71 -1.1
400,104 - CA264_01705 0.71 -1.7
400,107 - CA264_01705 0.72 -1.7

Or see this region's nucleotide sequence