Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5480 and Atu5481 overlap by 4 nucleotides Atu5481 and Atu5482 are separated by 33 nucleotides Atu5482 and Atu5483 are separated by 207 nucleotides
Atu5480: Atu5480 - ABC transporter nucleotide binding/ATPase, at 472,315 to 473,079
Atu5480
Atu5481: Atu5481 - ABC transporter membrane spanning protein, at 473,076 to 473,804
Atu5481
Atu5482: Atu5482 - ABC transporter substrate binding protein (amino acid), at 473,838 to 474,647
Atu5482
Atu5483: Atu5483 - GntR family transcriptional regulator, at 474,855 to 475,853
Atu5483
Position (kb) 473
474
475 Strain fitness (log2 ratio) -1
0
1
2
3 at 472.896 kb on + strand, within Atu5480 at 472.904 kb on - strand, within Atu5480 at 472.913 kb on + strand, within Atu5480 at 472.946 kb on - strand, within Atu5480 at 472.979 kb on - strand, within Atu5480 at 472.979 kb on - strand, within Atu5480 at 473.121 kb on + strand at 473.178 kb on - strand, within Atu5481 at 473.243 kb on - strand, within Atu5481 at 473.398 kb on + strand, within Atu5481 at 473.398 kb on - strand, within Atu5481 at 473.406 kb on - strand, within Atu5481 at 473.406 kb on - strand, within Atu5481 at 473.474 kb on + strand, within Atu5481 at 473.500 kb on - strand, within Atu5481 at 473.512 kb on + strand, within Atu5481 at 473.603 kb on + strand, within Atu5481 at 473.611 kb on - strand, within Atu5481 at 473.611 kb on - strand, within Atu5481 at 473.688 kb on + strand, within Atu5481 at 473.736 kb on - strand at 473.752 kb on - strand at 473.756 kb on + strand at 473.781 kb on + strand at 473.844 kb on - strand at 473.964 kb on - strand, within Atu5482 at 474.014 kb on + strand, within Atu5482 at 474.018 kb on - strand, within Atu5482 at 474.026 kb on + strand, within Atu5482 at 474.034 kb on - strand, within Atu5482 at 474.034 kb on - strand, within Atu5482 at 474.034 kb on - strand, within Atu5482 at 474.034 kb on - strand, within Atu5482 at 474.036 kb on + strand, within Atu5482 at 474.036 kb on + strand, within Atu5482 at 474.036 kb on + strand, within Atu5482 at 474.039 kb on - strand, within Atu5482 at 474.044 kb on - strand, within Atu5482 at 474.044 kb on - strand, within Atu5482 at 474.049 kb on - strand, within Atu5482 at 474.084 kb on + strand, within Atu5482 at 474.096 kb on + strand, within Atu5482 at 474.108 kb on + strand, within Atu5482 at 474.108 kb on + strand, within Atu5482 at 474.108 kb on + strand, within Atu5482 at 474.108 kb on + strand, within Atu5482 at 474.108 kb on + strand, within Atu5482 at 474.108 kb on + strand, within Atu5482 at 474.116 kb on - strand, within Atu5482 at 474.116 kb on - strand, within Atu5482 at 474.116 kb on - strand, within Atu5482 at 474.135 kb on - strand, within Atu5482 at 474.157 kb on + strand, within Atu5482 at 474.157 kb on + strand, within Atu5482 at 474.157 kb on + strand, within Atu5482 at 474.159 kb on - strand, within Atu5482 at 474.160 kb on - strand, within Atu5482 at 474.165 kb on - strand, within Atu5482 at 474.165 kb on - strand, within Atu5482 at 474.268 kb on + strand, within Atu5482 at 474.394 kb on + strand, within Atu5482 at 474.411 kb on - strand, within Atu5482 at 474.413 kb on - strand, within Atu5482 at 474.436 kb on + strand, within Atu5482 at 474.436 kb on + strand, within Atu5482 at 474.463 kb on - strand, within Atu5482 at 474.547 kb on - strand, within Atu5482 at 474.568 kb on + strand at 474.586 kb on - strand at 474.663 kb on - strand at 474.672 kb on + strand at 474.832 kb on + strand at 475.039 kb on + strand, within Atu5483 at 475.056 kb on + strand, within Atu5483 at 475.066 kb on + strand, within Atu5483 at 475.080 kb on - strand, within Atu5483 at 475.098 kb on - strand, within Atu5483 at 475.104 kb on + strand, within Atu5483 at 475.112 kb on - strand, within Atu5483 at 475.180 kb on + strand, within Atu5483 at 475.289 kb on + strand, within Atu5483 at 475.352 kb on + strand, within Atu5483 at 475.367 kb on + strand, within Atu5483 at 475.455 kb on + strand, within Atu5483 at 475.456 kb on + strand, within Atu5483 at 475.456 kb on - strand, within Atu5483 at 475.494 kb on - strand, within Atu5483
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 472,896 + Atu5480 0.76 +2.0 472,904 - Atu5480 0.77 +2.0 472,913 + Atu5480 0.78 +1.7 472,946 - Atu5480 0.82 +0.2 472,979 - Atu5480 0.87 +0.1 472,979 - Atu5480 0.87 -0.2 473,121 + -0.3 473,178 - Atu5481 0.14 +0.5 473,243 - Atu5481 0.23 +1.3 473,398 + Atu5481 0.44 +3.0 473,398 - Atu5481 0.44 +1.0 473,406 - Atu5481 0.45 +0.0 473,406 - Atu5481 0.45 +3.0 473,474 + Atu5481 0.55 +1.4 473,500 - Atu5481 0.58 +0.2 473,512 + Atu5481 0.60 -0.6 473,603 + Atu5481 0.72 -1.0 473,611 - Atu5481 0.73 +0.2 473,611 - Atu5481 0.73 +0.3 473,688 + Atu5481 0.84 +0.2 473,736 - -0.8 473,752 - +0.1 473,756 + -0.5 473,781 + -0.4 473,844 - -0.7 473,964 - Atu5482 0.16 +0.1 474,014 + Atu5482 0.22 +1.7 474,018 - Atu5482 0.22 +0.9 474,026 + Atu5482 0.23 +0.0 474,034 - Atu5482 0.24 +0.3 474,034 - Atu5482 0.24 -0.9 474,034 - Atu5482 0.24 -0.1 474,034 - Atu5482 0.24 -0.7 474,036 + Atu5482 0.24 +2.3 474,036 + Atu5482 0.24 +0.3 474,036 + Atu5482 0.24 +0.3 474,039 - Atu5482 0.25 -0.1 474,044 - Atu5482 0.25 +0.7 474,044 - Atu5482 0.25 -0.3 474,049 - Atu5482 0.26 +2.0 474,084 + Atu5482 0.30 +0.3 474,096 + Atu5482 0.32 +0.8 474,108 + Atu5482 0.33 -0.2 474,108 + Atu5482 0.33 -0.0 474,108 + Atu5482 0.33 -0.2 474,108 + Atu5482 0.33 -0.3 474,108 + Atu5482 0.33 +0.8 474,108 + Atu5482 0.33 -0.1 474,116 - Atu5482 0.34 +0.1 474,116 - Atu5482 0.34 -0.0 474,116 - Atu5482 0.34 +0.4 474,135 - Atu5482 0.37 +0.3 474,157 + Atu5482 0.39 +0.1 474,157 + Atu5482 0.39 +2.0 474,157 + Atu5482 0.39 -0.4 474,159 - Atu5482 0.40 -0.1 474,160 - Atu5482 0.40 -0.7 474,165 - Atu5482 0.40 +2.3 474,165 - Atu5482 0.40 +1.1 474,268 + Atu5482 0.53 +1.0 474,394 + Atu5482 0.69 -0.5 474,411 - Atu5482 0.71 +0.0 474,413 - Atu5482 0.71 -0.5 474,436 + Atu5482 0.74 -0.8 474,436 + Atu5482 0.74 -0.3 474,463 - Atu5482 0.77 -0.3 474,547 - Atu5482 0.88 +0.1 474,568 + +1.0 474,586 - -0.1 474,663 - +0.3 474,672 + -1.1 474,832 + +1.2 475,039 + Atu5483 0.18 +1.2 475,056 + Atu5483 0.20 -0.2 475,066 + Atu5483 0.21 -0.6 475,080 - Atu5483 0.23 -0.0 475,098 - Atu5483 0.24 +0.1 475,104 + Atu5483 0.25 -1.0 475,112 - Atu5483 0.26 +1.3 475,180 + Atu5483 0.33 +0.1 475,289 + Atu5483 0.43 -0.2 475,352 + Atu5483 0.50 +1.1 475,367 + Atu5483 0.51 +0.3 475,455 + Atu5483 0.60 -0.5 475,456 + Atu5483 0.60 +0.2 475,456 - Atu5483 0.60 +0.1 475,494 - Atu5483 0.64 -0.6
Or see this region's nucleotide sequence