Strain Fitness in Agrobacterium fabrum C58 around Atu1319

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1317 and Atu1318 are separated by 126 nucleotidesAtu1318 and Atu1319 are separated by 56 nucleotidesAtu1319 and Atu1320 are separated by 20 nucleotidesAtu1320 and Atu1321 are separated by 66 nucleotides Atu1317: Atu1317 - metal dependent hydrolase, at 1,307,339 to 1,308,439 Atu1317 Atu1318: Atu1318 - glutamyl-tRNA-Gln-amidotransferase chain C, at 1,308,566 to 1,308,853 Atu1318 Atu1319: Atu1319 - glutamyl-tRNA amidotransferase subunit A, at 1,308,910 to 1,310,391 Atu1319 Atu1320: Atu1320 - acetyltransferase, at 1,310,412 to 1,310,879 Atu1320 Atu1321: Atu1321 - hypothetical protein, at 1,310,946 to 1,311,203 Atu1321 Position (kb) 1308 1309 1310 1311Strain fitness (log2 ratio) -2 -1 0 1at 1308.007 kb on + strand, within Atu1317at 1308.039 kb on + strand, within Atu1317at 1308.080 kb on - strand, within Atu1317at 1308.200 kb on - strand, within Atu1317at 1310.493 kb on - strand, within Atu1320at 1310.584 kb on + strand, within Atu1320at 1310.597 kb on - strand, within Atu1320at 1310.736 kb on + strand, within Atu1320at 1310.817 kb on - strand, within Atu1320at 1310.849 kb on + strandat 1310.849 kb on + strandat 1310.868 kb on - strandat 1310.983 kb on - strand, within Atu1321at 1311.167 kb on + strand, within Atu1321at 1311.167 kb on + strand, within Atu1321at 1311.175 kb on - strand, within Atu1321

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,308,007 + Atu1317 0.61 +0.3
1,308,039 + Atu1317 0.64 +0.9
1,308,080 - Atu1317 0.67 -0.1
1,308,200 - Atu1317 0.78 -0.0
1,310,493 - Atu1320 0.17 -0.3
1,310,584 + Atu1320 0.37 +0.5
1,310,597 - Atu1320 0.40 +0.2
1,310,736 + Atu1320 0.69 +0.2
1,310,817 - Atu1320 0.87 -0.1
1,310,849 + +0.1
1,310,849 + -0.2
1,310,868 - -2.0
1,310,983 - Atu1321 0.14 -0.3
1,311,167 + Atu1321 0.86 -0.1
1,311,167 + Atu1321 0.86 -0.3
1,311,175 - Atu1321 0.89 +0.8

Or see this region's nucleotide sequence