Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4266

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4264 and Echvi_4265 overlap by 4 nucleotidesEchvi_4265 and Echvi_4266 are separated by 509 nucleotidesEchvi_4266 and Echvi_4267 overlap by 8 nucleotidesEchvi_4267 and Echvi_4268 are separated by 182 nucleotidesEchvi_4268 and Echvi_4269 are separated by 36 nucleotides Echvi_4264: Echvi_4264 - hypothetical protein, at 5,119,283 to 5,119,975 _4264 Echvi_4265: Echvi_4265 - hypothetical protein, at 5,119,972 to 5,120,103 _4265 Echvi_4266: Echvi_4266 - Uncharacterized conserved protein, at 5,120,613 to 5,121,113 _4266 Echvi_4267: Echvi_4267 - Predicted transcriptional regulators, at 5,121,106 to 5,121,429 _4267 Echvi_4268: Echvi_4268 - hypothetical protein, at 5,121,612 to 5,121,827 _4268 Echvi_4269: Echvi_4269 - Uncharacterized protein conserved in bacteria, at 5,121,864 to 5,122,442 _4269 Position (kb) 5120 5121 5122Strain fitness (log2 ratio) -2 -1 0 1 2at 5119.632 kb on + strand, within Echvi_4264at 5119.633 kb on - strand, within Echvi_4264at 5119.759 kb on + strand, within Echvi_4264at 5119.775 kb on - strand, within Echvi_4264at 5119.820 kb on + strand, within Echvi_4264at 5119.821 kb on - strand, within Echvi_4264at 5119.850 kb on + strand, within Echvi_4264at 5119.852 kb on + strand, within Echvi_4264at 5119.852 kb on + strand, within Echvi_4264at 5119.852 kb on + strand, within Echvi_4264at 5119.996 kb on + strand, within Echvi_4265at 5119.996 kb on + strand, within Echvi_4265at 5120.005 kb on + strand, within Echvi_4265at 5120.106 kb on + strandat 5120.106 kb on + strandat 5120.107 kb on - strandat 5120.107 kb on - strandat 5120.119 kb on + strandat 5120.128 kb on - strandat 5120.128 kb on - strandat 5120.128 kb on - strandat 5120.130 kb on - strandat 5120.132 kb on + strandat 5120.173 kb on + strandat 5120.215 kb on - strandat 5120.218 kb on - strandat 5120.261 kb on - strandat 5120.263 kb on + strandat 5120.263 kb on + strandat 5120.264 kb on - strandat 5120.264 kb on - strandat 5120.432 kb on + strandat 5120.442 kb on + strandat 5120.442 kb on + strandat 5120.442 kb on + strandat 5120.442 kb on + strandat 5120.473 kb on + strandat 5120.474 kb on - strandat 5120.480 kb on + strandat 5120.593 kb on + strandat 5120.621 kb on + strandat 5120.673 kb on - strand, within Echvi_4266at 5120.690 kb on + strand, within Echvi_4266at 5120.690 kb on + strand, within Echvi_4266at 5120.691 kb on - strand, within Echvi_4266at 5120.798 kb on + strand, within Echvi_4266at 5120.799 kb on - strand, within Echvi_4266at 5120.848 kb on - strand, within Echvi_4266at 5120.858 kb on + strand, within Echvi_4266at 5120.866 kb on + strand, within Echvi_4266at 5120.876 kb on + strand, within Echvi_4266at 5120.904 kb on + strand, within Echvi_4266at 5120.904 kb on + strand, within Echvi_4266at 5120.905 kb on - strand, within Echvi_4266at 5120.960 kb on + strand, within Echvi_4266at 5120.961 kb on - strand, within Echvi_4266at 5120.961 kb on - strand, within Echvi_4266at 5120.965 kb on + strand, within Echvi_4266at 5120.965 kb on + strand, within Echvi_4266at 5121.022 kb on - strand, within Echvi_4266at 5121.048 kb on - strand, within Echvi_4266at 5121.062 kb on + strand, within Echvi_4266at 5121.062 kb on + strand, within Echvi_4266at 5121.063 kb on - strand, within Echvi_4266at 5121.063 kb on - strand, within Echvi_4266at 5121.066 kb on - strandat 5121.066 kb on - strandat 5121.107 kb on + strandat 5121.107 kb on + strandat 5121.118 kb on - strandat 5121.118 kb on - strandat 5121.127 kb on + strandat 5121.128 kb on - strandat 5121.136 kb on + strandat 5121.139 kb on + strand, within Echvi_4267at 5121.415 kb on + strandat 5121.415 kb on + strandat 5121.415 kb on + strandat 5121.462 kb on + strandat 5121.462 kb on + strandat 5121.466 kb on + strandat 5121.491 kb on - strandat 5121.524 kb on + strandat 5121.525 kb on - strandat 5121.525 kb on - strandat 5121.586 kb on - strandat 5121.590 kb on - strandat 5121.590 kb on - strandat 5121.590 kb on - strandat 5121.625 kb on - strandat 5121.625 kb on - strandat 5121.625 kb on - strandat 5121.711 kb on - strand, within Echvi_4268at 5121.738 kb on - strand, within Echvi_4268at 5121.742 kb on + strand, within Echvi_4268at 5121.752 kb on - strand, within Echvi_4268at 5121.774 kb on + strand, within Echvi_4268at 5121.774 kb on + strand, within Echvi_4268at 5121.774 kb on + strand, within Echvi_4268at 5121.775 kb on - strand, within Echvi_4268at 5121.775 kb on - strand, within Echvi_4268at 5121.780 kb on - strand, within Echvi_4268at 5121.780 kb on - strand, within Echvi_4268at 5121.844 kb on - strandat 5121.875 kb on + strandat 5121.892 kb on - strandat 5121.894 kb on + strandat 5121.990 kb on + strand, within Echvi_4269at 5121.990 kb on + strand, within Echvi_4269at 5121.990 kb on + strand, within Echvi_4269at 5121.991 kb on - strand, within Echvi_4269at 5121.997 kb on + strand, within Echvi_4269at 5121.998 kb on - strand, within Echvi_4269at 5122.049 kb on + strand, within Echvi_4269

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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5,119,632 + Echvi_4264 0.50 -0.0
5,119,633 - Echvi_4264 0.51 +0.5
5,119,759 + Echvi_4264 0.69 -0.9
5,119,775 - Echvi_4264 0.71 -0.2
5,119,820 + Echvi_4264 0.77 -0.4
5,119,821 - Echvi_4264 0.78 +1.0
5,119,850 + Echvi_4264 0.82 -0.2
5,119,852 + Echvi_4264 0.82 +1.9
5,119,852 + Echvi_4264 0.82 -1.8
5,119,852 + Echvi_4264 0.82 -1.0
5,119,996 + Echvi_4265 0.18 +1.0
5,119,996 + Echvi_4265 0.18 -1.8
5,120,005 + Echvi_4265 0.25 +0.9
5,120,106 + +0.4
5,120,106 + -0.7
5,120,107 - +0.9
5,120,107 - -1.6
5,120,119 + -0.5
5,120,128 - +0.3
5,120,128 - -0.0
5,120,128 - -0.5
5,120,130 - -0.4
5,120,132 + +1.4
5,120,173 + +1.0
5,120,215 - +0.7
5,120,218 - +0.7
5,120,261 - -0.6
5,120,263 + +0.7
5,120,263 + +0.3
5,120,264 - -0.7
5,120,264 - +0.5
5,120,432 + +0.8
5,120,442 + -0.4
5,120,442 + +0.7
5,120,442 + -0.5
5,120,442 + -1.6
5,120,473 + -1.3
5,120,474 - +0.0
5,120,480 + +0.3
5,120,593 + +0.7
5,120,621 + -0.9
5,120,673 - Echvi_4266 0.12 -1.1
5,120,690 + Echvi_4266 0.15 +0.7
5,120,690 + Echvi_4266 0.15 +0.4
5,120,691 - Echvi_4266 0.16 +0.3
5,120,798 + Echvi_4266 0.37 +0.1
5,120,799 - Echvi_4266 0.37 +0.8
5,120,848 - Echvi_4266 0.47 -0.7
5,120,858 + Echvi_4266 0.49 +0.4
5,120,866 + Echvi_4266 0.50 -0.5
5,120,876 + Echvi_4266 0.52 +0.2
5,120,904 + Echvi_4266 0.58 +0.2
5,120,904 + Echvi_4266 0.58 +0.7
5,120,905 - Echvi_4266 0.58 -1.2
5,120,960 + Echvi_4266 0.69 -1.1
5,120,961 - Echvi_4266 0.69 +0.5
5,120,961 - Echvi_4266 0.69 +1.5
5,120,965 + Echvi_4266 0.70 -0.2
5,120,965 + Echvi_4266 0.70 +0.1
5,121,022 - Echvi_4266 0.82 +0.1
5,121,048 - Echvi_4266 0.87 +0.2
5,121,062 + Echvi_4266 0.90 +0.8
5,121,062 + Echvi_4266 0.90 -0.2
5,121,063 - Echvi_4266 0.90 -0.0
5,121,063 - Echvi_4266 0.90 +2.0
5,121,066 - -0.7
5,121,066 - -0.7
5,121,107 + +0.6
5,121,107 + -0.2
5,121,118 - -0.1
5,121,118 - +0.3
5,121,127 + -0.4
5,121,128 - -1.0
5,121,136 + +0.8
5,121,139 + Echvi_4267 0.10 -1.5
5,121,415 + +0.6
5,121,415 + +0.2
5,121,415 + -0.8
5,121,462 + -0.8
5,121,462 + -0.6
5,121,466 + -0.6
5,121,491 - +0.4
5,121,524 + -0.3
5,121,525 - -1.4
5,121,525 - +0.6
5,121,586 - +0.0
5,121,590 - -0.7
5,121,590 - +0.3
5,121,590 - +0.3
5,121,625 - -0.2
5,121,625 - -0.7
5,121,625 - -1.1
5,121,711 - Echvi_4268 0.46 -0.0
5,121,738 - Echvi_4268 0.58 +0.7
5,121,742 + Echvi_4268 0.60 -0.3
5,121,752 - Echvi_4268 0.65 +0.6
5,121,774 + Echvi_4268 0.75 -1.3
5,121,774 + Echvi_4268 0.75 +1.1
5,121,774 + Echvi_4268 0.75 -0.1
5,121,775 - Echvi_4268 0.75 +0.3
5,121,775 - Echvi_4268 0.75 +1.5
5,121,780 - Echvi_4268 0.78 +0.2
5,121,780 - Echvi_4268 0.78 +0.6
5,121,844 - -2.2
5,121,875 + +0.0
5,121,892 - -0.5
5,121,894 + +0.3
5,121,990 + Echvi_4269 0.22 +0.4
5,121,990 + Echvi_4269 0.22 -1.0
5,121,990 + Echvi_4269 0.22 -0.3
5,121,991 - Echvi_4269 0.22 -0.2
5,121,997 + Echvi_4269 0.23 +0.9
5,121,998 - Echvi_4269 0.23 -0.8
5,122,049 + Echvi_4269 0.32 -1.1

Or see this region's nucleotide sequence