Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4094

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4093 and Echvi_4094 overlap by 20 nucleotidesEchvi_4094 and Echvi_4095 are separated by 5 nucleotidesEchvi_4095 and Echvi_4096 are separated by 3 nucleotides Echvi_4093: Echvi_4093 - Bacteroides conjugative transposon TraM protein, at 4,911,591 to 4,912,769 _4093 Echvi_4094: Echvi_4094 - hypothetical protein, at 4,912,750 to 4,913,049 _4094 Echvi_4095: Echvi_4095 - Bacteroides conjugative transposon TraK protein, at 4,913,055 to 4,913,672 _4095 Echvi_4096: Echvi_4096 - Bacteroides conjugative transposon TraJ protein, at 4,913,676 to 4,914,695 _4096 Position (kb) 4912 4913 4914Strain fitness (log2 ratio) -1 0 1 2at 4911.871 kb on - strand, within Echvi_4093at 4911.939 kb on + strand, within Echvi_4093at 4912.022 kb on - strand, within Echvi_4093at 4912.088 kb on - strand, within Echvi_4093at 4912.227 kb on + strand, within Echvi_4093at 4912.497 kb on + strand, within Echvi_4093at 4912.610 kb on + strand, within Echvi_4093at 4912.647 kb on + strand, within Echvi_4093at 4912.801 kb on - strand, within Echvi_4094at 4912.964 kb on + strand, within Echvi_4094at 4912.965 kb on - strand, within Echvi_4094at 4912.965 kb on - strand, within Echvi_4094at 4913.222 kb on - strand, within Echvi_4095at 4913.240 kb on - strand, within Echvi_4095at 4913.259 kb on + strand, within Echvi_4095at 4913.260 kb on - strand, within Echvi_4095at 4913.338 kb on + strand, within Echvi_4095at 4913.506 kb on - strand, within Echvi_4095at 4913.525 kb on + strand, within Echvi_4095at 4913.525 kb on + strand, within Echvi_4095at 4913.525 kb on + strand, within Echvi_4095at 4913.525 kb on + strand, within Echvi_4095at 4913.526 kb on - strand, within Echvi_4095at 4913.526 kb on - strand, within Echvi_4095at 4913.526 kb on - strand, within Echvi_4095at 4913.528 kb on - strand, within Echvi_4095at 4913.528 kb on - strand, within Echvi_4095at 4913.529 kb on + strand, within Echvi_4095at 4913.530 kb on - strand, within Echvi_4095at 4913.629 kb on - strandat 4913.629 kb on - strandat 4913.629 kb on - strandat 4913.652 kb on - strandat 4913.677 kb on + strandat 4913.677 kb on + strandat 4913.678 kb on - strandat 4913.679 kb on + strandat 4913.736 kb on + strandat 4913.736 kb on + strandat 4913.736 kb on + strandat 4913.737 kb on - strandat 4913.738 kb on + strandat 4913.757 kb on + strandat 4913.810 kb on + strand, within Echvi_4096at 4913.846 kb on + strand, within Echvi_4096at 4913.846 kb on + strand, within Echvi_4096at 4913.847 kb on - strand, within Echvi_4096at 4913.849 kb on - strand, within Echvi_4096at 4913.849 kb on - strand, within Echvi_4096at 4913.849 kb on - strand, within Echvi_4096at 4913.945 kb on + strand, within Echvi_4096at 4913.946 kb on - strand, within Echvi_4096at 4913.957 kb on + strand, within Echvi_4096at 4913.957 kb on + strand, within Echvi_4096at 4913.957 kb on + strand, within Echvi_4096at 4913.957 kb on + strand, within Echvi_4096at 4913.984 kb on + strand, within Echvi_4096at 4914.004 kb on - strand, within Echvi_4096

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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4,911,871 - Echvi_4093 0.24 -0.5
4,911,939 + Echvi_4093 0.30 -1.2
4,912,022 - Echvi_4093 0.37 +0.2
4,912,088 - Echvi_4093 0.42 -0.6
4,912,227 + Echvi_4093 0.54 -0.3
4,912,497 + Echvi_4093 0.77 +0.1
4,912,610 + Echvi_4093 0.86 -0.4
4,912,647 + Echvi_4093 0.90 -0.3
4,912,801 - Echvi_4094 0.17 -0.8
4,912,964 + Echvi_4094 0.71 +0.7
4,912,965 - Echvi_4094 0.72 +0.0
4,912,965 - Echvi_4094 0.72 +0.6
4,913,222 - Echvi_4095 0.27 +0.2
4,913,240 - Echvi_4095 0.30 +0.2
4,913,259 + Echvi_4095 0.33 +2.2
4,913,260 - Echvi_4095 0.33 +0.6
4,913,338 + Echvi_4095 0.46 +0.1
4,913,506 - Echvi_4095 0.73 +0.7
4,913,525 + Echvi_4095 0.76 +0.9
4,913,525 + Echvi_4095 0.76 +1.1
4,913,525 + Echvi_4095 0.76 +0.4
4,913,525 + Echvi_4095 0.76 -0.9
4,913,526 - Echvi_4095 0.76 -0.5
4,913,526 - Echvi_4095 0.76 +0.3
4,913,526 - Echvi_4095 0.76 +0.3
4,913,528 - Echvi_4095 0.77 +1.0
4,913,528 - Echvi_4095 0.77 -0.2
4,913,529 + Echvi_4095 0.77 -1.3
4,913,530 - Echvi_4095 0.77 +0.2
4,913,629 - +0.2
4,913,629 - -0.7
4,913,629 - +2.6
4,913,652 - +0.4
4,913,677 + +0.3
4,913,677 + +0.7
4,913,678 - -1.4
4,913,679 + -0.0
4,913,736 + -0.5
4,913,736 + -0.9
4,913,736 + +0.1
4,913,737 - +0.1
4,913,738 + +0.5
4,913,757 + -0.1
4,913,810 + Echvi_4096 0.13 +1.7
4,913,846 + Echvi_4096 0.17 -0.4
4,913,846 + Echvi_4096 0.17 -0.7
4,913,847 - Echvi_4096 0.17 +0.9
4,913,849 - Echvi_4096 0.17 -0.4
4,913,849 - Echvi_4096 0.17 +0.4
4,913,849 - Echvi_4096 0.17 +0.9
4,913,945 + Echvi_4096 0.26 +0.4
4,913,946 - Echvi_4096 0.26 +0.9
4,913,957 + Echvi_4096 0.28 -0.1
4,913,957 + Echvi_4096 0.28 -1.5
4,913,957 + Echvi_4096 0.28 -0.1
4,913,957 + Echvi_4096 0.28 +0.2
4,913,984 + Echvi_4096 0.30 +1.0
4,914,004 - Echvi_4096 0.32 +0.2

Or see this region's nucleotide sequence