Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3860

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3858 and Echvi_3859 are separated by 22 nucleotidesEchvi_3859 and Echvi_3860 are separated by 50 nucleotidesEchvi_3860 and Echvi_3861 are separated by 3 nucleotides Echvi_3858: Echvi_3858 - Methyltransferase domain., at 4,611,290 to 4,612,000 _3858 Echvi_3859: Echvi_3859 - Glycosyltransferases, probably involved in cell wall biogenesis, at 4,612,023 to 4,612,880 _3859 Echvi_3860: Echvi_3860 - hypothetical protein, at 4,612,931 to 4,613,647 _3860 Echvi_3861: Echvi_3861 - Membrane protein involved in the export of O-antigen and teichoic acid, at 4,613,651 to 4,615,141 _3861 Position (kb) 4612 4613 4614Strain fitness (log2 ratio) -3 -2 -1 0 1at 4612.022 kb on + strandat 4612.022 kb on + strandat 4612.022 kb on + strandat 4612.022 kb on + strandat 4612.023 kb on - strandat 4612.023 kb on - strandat 4612.023 kb on - strandat 4612.032 kb on + strandat 4612.033 kb on - strandat 4612.078 kb on + strandat 4612.207 kb on + strand, within Echvi_3859at 4612.207 kb on + strand, within Echvi_3859at 4612.207 kb on + strand, within Echvi_3859at 4612.208 kb on - strand, within Echvi_3859at 4612.208 kb on - strand, within Echvi_3859at 4612.211 kb on + strand, within Echvi_3859at 4612.325 kb on - strand, within Echvi_3859at 4612.342 kb on - strand, within Echvi_3859at 4612.475 kb on + strand, within Echvi_3859at 4612.612 kb on + strand, within Echvi_3859at 4612.633 kb on - strand, within Echvi_3859at 4612.672 kb on - strand, within Echvi_3859at 4612.747 kb on - strand, within Echvi_3859at 4612.770 kb on + strand, within Echvi_3859at 4612.885 kb on - strandat 4613.028 kb on - strand, within Echvi_3860at 4613.028 kb on - strand, within Echvi_3860at 4613.072 kb on + strand, within Echvi_3860at 4613.076 kb on - strand, within Echvi_3860at 4613.239 kb on + strand, within Echvi_3860at 4613.306 kb on + strand, within Echvi_3860at 4613.374 kb on - strand, within Echvi_3860at 4613.600 kb on - strandat 4613.650 kb on + strandat 4613.650 kb on + strandat 4613.650 kb on + strandat 4613.650 kb on + strandat 4613.650 kb on + strandat 4613.650 kb on + strandat 4613.651 kb on - strandat 4614.011 kb on - strand, within Echvi_3861at 4614.028 kb on - strand, within Echvi_3861

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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4,612,022 + -0.5
4,612,022 + -0.4
4,612,022 + +0.2
4,612,022 + -1.6
4,612,023 - -1.6
4,612,023 - -0.7
4,612,023 - -1.0
4,612,032 + -2.0
4,612,033 - -0.4
4,612,078 + -1.2
4,612,207 + Echvi_3859 0.21 -0.0
4,612,207 + Echvi_3859 0.21 -0.8
4,612,207 + Echvi_3859 0.21 -0.3
4,612,208 - Echvi_3859 0.22 +0.4
4,612,208 - Echvi_3859 0.22 -2.9
4,612,211 + Echvi_3859 0.22 -1.2
4,612,325 - Echvi_3859 0.35 -0.6
4,612,342 - Echvi_3859 0.37 -2.0
4,612,475 + Echvi_3859 0.53 -0.7
4,612,612 + Echvi_3859 0.69 -0.2
4,612,633 - Echvi_3859 0.71 -1.3
4,612,672 - Echvi_3859 0.76 +0.2
4,612,747 - Echvi_3859 0.84 -0.8
4,612,770 + Echvi_3859 0.87 -1.1
4,612,885 - +0.5
4,613,028 - Echvi_3860 0.14 -0.6
4,613,028 - Echvi_3860 0.14 -1.1
4,613,072 + Echvi_3860 0.20 -0.6
4,613,076 - Echvi_3860 0.20 -0.5
4,613,239 + Echvi_3860 0.43 -0.7
4,613,306 + Echvi_3860 0.52 -1.1
4,613,374 - Echvi_3860 0.62 -1.0
4,613,600 - -0.3
4,613,650 + -0.0
4,613,650 + +1.0
4,613,650 + -0.9
4,613,650 + -0.4
4,613,650 + +0.0
4,613,650 + -0.9
4,613,651 - -3.1
4,614,011 - Echvi_3861 0.24 -0.1
4,614,028 - Echvi_3861 0.25 +0.4

Or see this region's nucleotide sequence