Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3858 and Echvi_3859 are separated by 22 nucleotides Echvi_3859 and Echvi_3860 are separated by 50 nucleotides Echvi_3860 and Echvi_3861 are separated by 3 nucleotides
Echvi_3858: Echvi_3858 - Methyltransferase domain., at 4,611,290 to 4,612,000
_3858
Echvi_3859: Echvi_3859 - Glycosyltransferases, probably involved in cell wall biogenesis, at 4,612,023 to 4,612,880
_3859
Echvi_3860: Echvi_3860 - hypothetical protein, at 4,612,931 to 4,613,647
_3860
Echvi_3861: Echvi_3861 - Membrane protein involved in the export of O-antigen and teichoic acid, at 4,613,651 to 4,615,141
_3861
Position (kb)
4612
4613
4614 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4612.022 kb on + strand at 4612.022 kb on + strand at 4612.022 kb on + strand at 4612.022 kb on + strand at 4612.023 kb on - strand at 4612.023 kb on - strand at 4612.023 kb on - strand at 4612.032 kb on + strand at 4612.033 kb on - strand at 4612.078 kb on + strand at 4612.207 kb on + strand, within Echvi_3859 at 4612.207 kb on + strand, within Echvi_3859 at 4612.207 kb on + strand, within Echvi_3859 at 4612.208 kb on - strand, within Echvi_3859 at 4612.208 kb on - strand, within Echvi_3859 at 4612.211 kb on + strand, within Echvi_3859 at 4612.325 kb on - strand, within Echvi_3859 at 4612.342 kb on - strand, within Echvi_3859 at 4612.475 kb on + strand, within Echvi_3859 at 4612.612 kb on + strand, within Echvi_3859 at 4612.633 kb on - strand, within Echvi_3859 at 4612.672 kb on - strand, within Echvi_3859 at 4612.747 kb on - strand, within Echvi_3859 at 4612.770 kb on + strand, within Echvi_3859 at 4612.885 kb on - strand at 4613.028 kb on - strand, within Echvi_3860 at 4613.028 kb on - strand, within Echvi_3860 at 4613.072 kb on + strand, within Echvi_3860 at 4613.076 kb on - strand, within Echvi_3860 at 4613.239 kb on + strand, within Echvi_3860 at 4613.306 kb on + strand, within Echvi_3860 at 4613.374 kb on - strand, within Echvi_3860 at 4613.600 kb on - strand at 4613.650 kb on + strand at 4613.650 kb on + strand at 4613.650 kb on + strand at 4613.650 kb on + strand at 4613.650 kb on + strand at 4613.650 kb on + strand at 4613.651 kb on - strand at 4614.011 kb on - strand, within Echvi_3861 at 4614.028 kb on - strand, within Echvi_3861
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 4,612,022 + -0.5 4,612,022 + -0.4 4,612,022 + +0.2 4,612,022 + -1.6 4,612,023 - -1.6 4,612,023 - -0.7 4,612,023 - -1.0 4,612,032 + -2.0 4,612,033 - -0.4 4,612,078 + -1.2 4,612,207 + Echvi_3859 0.21 -0.0 4,612,207 + Echvi_3859 0.21 -0.8 4,612,207 + Echvi_3859 0.21 -0.3 4,612,208 - Echvi_3859 0.22 +0.4 4,612,208 - Echvi_3859 0.22 -2.9 4,612,211 + Echvi_3859 0.22 -1.2 4,612,325 - Echvi_3859 0.35 -0.6 4,612,342 - Echvi_3859 0.37 -2.0 4,612,475 + Echvi_3859 0.53 -0.7 4,612,612 + Echvi_3859 0.69 -0.2 4,612,633 - Echvi_3859 0.71 -1.3 4,612,672 - Echvi_3859 0.76 +0.2 4,612,747 - Echvi_3859 0.84 -0.8 4,612,770 + Echvi_3859 0.87 -1.1 4,612,885 - +0.5 4,613,028 - Echvi_3860 0.14 -0.6 4,613,028 - Echvi_3860 0.14 -1.1 4,613,072 + Echvi_3860 0.20 -0.6 4,613,076 - Echvi_3860 0.20 -0.5 4,613,239 + Echvi_3860 0.43 -0.7 4,613,306 + Echvi_3860 0.52 -1.1 4,613,374 - Echvi_3860 0.62 -1.0 4,613,600 - -0.3 4,613,650 + -0.0 4,613,650 + +1.0 4,613,650 + -0.9 4,613,650 + -0.4 4,613,650 + +0.0 4,613,650 + -0.9 4,613,651 - -3.1 4,614,011 - Echvi_3861 0.24 -0.1 4,614,028 - Echvi_3861 0.25 +0.4
Or see this region's nucleotide sequence