Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2059 and Echvi_2060 are separated by 19 nucleotides Echvi_2060 and Echvi_2061 are separated by 131 nucleotides
Echvi_2059: Echvi_2059 - 3-isopropylmalate dehydratase, large subunit, at 2,428,223 to 2,429,620
_2059
Echvi_2060: Echvi_2060 - 3-isopropylmalate dehydratase, small subunit, at 2,429,640 to 2,430,233
_2060
Echvi_2061: Echvi_2061 - Isopropylmalate/homocitrate/citramalate synthases, at 2,430,365 to 2,431,879
_2061
Position (kb)
2429
2430
2431 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2428.672 kb on - strand, within Echvi_2059 at 2428.696 kb on + strand, within Echvi_2059 at 2428.697 kb on - strand, within Echvi_2059 at 2429.093 kb on + strand, within Echvi_2059 at 2429.094 kb on - strand, within Echvi_2059 at 2429.132 kb on - strand, within Echvi_2059 at 2429.401 kb on + strand, within Echvi_2059 at 2429.402 kb on - strand, within Echvi_2059 at 2429.486 kb on - strand at 2429.677 kb on + strand at 2430.181 kb on - strand at 2430.273 kb on - strand at 2430.324 kb on + strand at 2430.325 kb on - strand at 2430.331 kb on + strand at 2430.331 kb on + strand at 2430.510 kb on + strand at 2430.636 kb on + strand, within Echvi_2061 at 2430.637 kb on - strand, within Echvi_2061 at 2430.637 kb on - strand, within Echvi_2061 at 2430.787 kb on + strand, within Echvi_2061 at 2430.806 kb on + strand, within Echvi_2061 at 2430.807 kb on - strand, within Echvi_2061 at 2430.940 kb on - strand, within Echvi_2061 at 2430.940 kb on - strand, within Echvi_2061 at 2431.003 kb on - strand, within Echvi_2061 at 2431.012 kb on + strand, within Echvi_2061 at 2431.013 kb on - strand, within Echvi_2061 at 2431.111 kb on - strand, within Echvi_2061 at 2431.201 kb on - strand, within Echvi_2061 at 2431.201 kb on - strand, within Echvi_2061
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 2,428,672 - Echvi_2059 0.32 +0.8 2,428,696 + Echvi_2059 0.34 +0.8 2,428,697 - Echvi_2059 0.34 -0.6 2,429,093 + Echvi_2059 0.62 -1.7 2,429,094 - Echvi_2059 0.62 +0.1 2,429,132 - Echvi_2059 0.65 +0.4 2,429,401 + Echvi_2059 0.84 +0.1 2,429,402 - Echvi_2059 0.84 -0.2 2,429,486 - -0.2 2,429,677 + -0.8 2,430,181 - -2.5 2,430,273 - -0.5 2,430,324 + -0.6 2,430,325 - -1.6 2,430,331 + -1.7 2,430,331 + -0.1 2,430,510 + -1.8 2,430,636 + Echvi_2061 0.18 -1.3 2,430,637 - Echvi_2061 0.18 -0.2 2,430,637 - Echvi_2061 0.18 +0.4 2,430,787 + Echvi_2061 0.28 -2.6 2,430,806 + Echvi_2061 0.29 -2.8 2,430,807 - Echvi_2061 0.29 -0.4 2,430,940 - Echvi_2061 0.38 -2.1 2,430,940 - Echvi_2061 0.38 -2.7 2,431,003 - Echvi_2061 0.42 -2.8 2,431,012 + Echvi_2061 0.43 +0.1 2,431,013 - Echvi_2061 0.43 -0.4 2,431,111 - Echvi_2061 0.49 -0.9 2,431,201 - Echvi_2061 0.55 -0.2 2,431,201 - Echvi_2061 0.55 -1.3
Or see this region's nucleotide sequence