Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2060

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2059 and Echvi_2060 are separated by 19 nucleotidesEchvi_2060 and Echvi_2061 are separated by 131 nucleotides Echvi_2059: Echvi_2059 - 3-isopropylmalate dehydratase, large subunit, at 2,428,223 to 2,429,620 _2059 Echvi_2060: Echvi_2060 - 3-isopropylmalate dehydratase, small subunit, at 2,429,640 to 2,430,233 _2060 Echvi_2061: Echvi_2061 - Isopropylmalate/homocitrate/citramalate synthases, at 2,430,365 to 2,431,879 _2061 Position (kb) 2429 2430 2431Strain fitness (log2 ratio) -3 -2 -1 0 1at 2428.672 kb on - strand, within Echvi_2059at 2428.696 kb on + strand, within Echvi_2059at 2428.697 kb on - strand, within Echvi_2059at 2429.093 kb on + strand, within Echvi_2059at 2429.094 kb on - strand, within Echvi_2059at 2429.132 kb on - strand, within Echvi_2059at 2429.401 kb on + strand, within Echvi_2059at 2429.402 kb on - strand, within Echvi_2059at 2429.486 kb on - strandat 2429.677 kb on + strandat 2430.181 kb on - strandat 2430.273 kb on - strandat 2430.324 kb on + strandat 2430.325 kb on - strandat 2430.331 kb on + strandat 2430.331 kb on + strandat 2430.510 kb on + strandat 2430.636 kb on + strand, within Echvi_2061at 2430.637 kb on - strand, within Echvi_2061at 2430.637 kb on - strand, within Echvi_2061at 2430.787 kb on + strand, within Echvi_2061at 2430.806 kb on + strand, within Echvi_2061at 2430.807 kb on - strand, within Echvi_2061at 2430.940 kb on - strand, within Echvi_2061at 2430.940 kb on - strand, within Echvi_2061at 2431.003 kb on - strand, within Echvi_2061at 2431.012 kb on + strand, within Echvi_2061at 2431.013 kb on - strand, within Echvi_2061at 2431.111 kb on - strand, within Echvi_2061at 2431.201 kb on - strand, within Echvi_2061at 2431.201 kb on - strand, within Echvi_2061

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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2,428,672 - Echvi_2059 0.32 +0.8
2,428,696 + Echvi_2059 0.34 +0.8
2,428,697 - Echvi_2059 0.34 -0.6
2,429,093 + Echvi_2059 0.62 -1.7
2,429,094 - Echvi_2059 0.62 +0.1
2,429,132 - Echvi_2059 0.65 +0.4
2,429,401 + Echvi_2059 0.84 +0.1
2,429,402 - Echvi_2059 0.84 -0.2
2,429,486 - -0.2
2,429,677 + -0.8
2,430,181 - -2.5
2,430,273 - -0.5
2,430,324 + -0.6
2,430,325 - -1.6
2,430,331 + -1.7
2,430,331 + -0.1
2,430,510 + -1.8
2,430,636 + Echvi_2061 0.18 -1.3
2,430,637 - Echvi_2061 0.18 -0.2
2,430,637 - Echvi_2061 0.18 +0.4
2,430,787 + Echvi_2061 0.28 -2.6
2,430,806 + Echvi_2061 0.29 -2.8
2,430,807 - Echvi_2061 0.29 -0.4
2,430,940 - Echvi_2061 0.38 -2.1
2,430,940 - Echvi_2061 0.38 -2.7
2,431,003 - Echvi_2061 0.42 -2.8
2,431,012 + Echvi_2061 0.43 +0.1
2,431,013 - Echvi_2061 0.43 -0.4
2,431,111 - Echvi_2061 0.49 -0.9
2,431,201 - Echvi_2061 0.55 -0.2
2,431,201 - Echvi_2061 0.55 -1.3

Or see this region's nucleotide sequence