Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1742

Experiment: L-Methionine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_1741 and Echvi_1742 overlap by 4 nucleotidesEchvi_1742 and Echvi_1743 overlap by 4 nucleotidesEchvi_1743 and Echvi_1744 overlap by 1 nucleotides Echvi_1741: Echvi_1741 - DNA polymerase III, gamma/tau subunits, at 2,051,494 to 2,052,636 _1741 Echvi_1742: Echvi_1742 - Uncharacterized protein conserved in archaea, at 2,052,633 to 2,053,076 _1742 Echvi_1743: Echvi_1743 - alpha-L-glutamate ligases, RimK family, at 2,053,073 to 2,053,981 _1743 Echvi_1744: Echvi_1744 - porphobilinogen deaminase, at 2,053,981 to 2,054,916 _1744 Position (kb) 2052 2053 2054Strain fitness (log2 ratio) -3 -2 -1 0 1at 2052.611 kb on + strandat 2052.989 kb on - strand, within Echvi_1742at 2053.022 kb on - strand, within Echvi_1742at 2053.031 kb on - strand, within Echvi_1742at 2053.031 kb on - strand, within Echvi_1742at 2053.067 kb on + strandat 2053.067 kb on + strandat 2053.086 kb on + strandat 2053.109 kb on + strandat 2053.220 kb on + strand, within Echvi_1743at 2053.286 kb on + strand, within Echvi_1743at 2053.286 kb on + strand, within Echvi_1743at 2053.500 kb on + strand, within Echvi_1743at 2053.597 kb on + strand, within Echvi_1743at 2053.765 kb on + strand, within Echvi_1743at 2053.765 kb on + strand, within Echvi_1743at 2053.765 kb on + strand, within Echvi_1743at 2053.819 kb on + strand, within Echvi_1743

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
remove
2,052,611 + -0.6
2,052,989 - Echvi_1742 0.80 +0.8
2,053,022 - Echvi_1742 0.88 -0.3
2,053,031 - Echvi_1742 0.90 -0.2
2,053,031 - Echvi_1742 0.90 -0.4
2,053,067 + -1.9
2,053,067 + +0.6
2,053,086 + -2.9
2,053,109 + -2.7
2,053,220 + Echvi_1743 0.16 -1.3
2,053,286 + Echvi_1743 0.23 -1.2
2,053,286 + Echvi_1743 0.23 -1.9
2,053,500 + Echvi_1743 0.47 -1.5
2,053,597 + Echvi_1743 0.58 -1.4
2,053,765 + Echvi_1743 0.76 -1.8
2,053,765 + Echvi_1743 0.76 -1.9
2,053,765 + Echvi_1743 0.76 -1.7
2,053,819 + Echvi_1743 0.82 -1.7

Or see this region's nucleotide sequence