Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0808

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0807 and Echvi_0808 are separated by 348 nucleotidesEchvi_0808 and Echvi_0809 are separated by 396 nucleotides Echvi_0807: Echvi_0807 - transcription termination factor Rho, at 920,207 to 921,988 _0807 Echvi_0808: Echvi_0808 - hypothetical protein, at 922,337 to 924,913 _0808 Echvi_0809: Echvi_0809 - Transposase and inactivated derivatives, at 925,310 to 926,299 _0809 Position (kb) 922 923 924 925Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 922.004 kb on + strandat 922.047 kb on + strandat 922.142 kb on + strandat 922.142 kb on + strandat 922.173 kb on + strandat 922.173 kb on + strandat 922.173 kb on + strandat 922.176 kb on + strandat 922.177 kb on - strandat 922.185 kb on + strandat 922.186 kb on - strandat 922.188 kb on + strandat 922.188 kb on + strandat 922.189 kb on - strandat 922.189 kb on - strandat 922.189 kb on - strandat 922.262 kb on + strandat 922.262 kb on + strandat 922.263 kb on - strandat 922.308 kb on - strandat 922.308 kb on - strandat 922.308 kb on - strandat 922.311 kb on + strandat 922.311 kb on + strandat 922.312 kb on - strandat 922.312 kb on - strandat 922.312 kb on - strandat 922.312 kb on - strandat 922.323 kb on + strandat 922.324 kb on - strandat 922.324 kb on - strandat 922.324 kb on - strandat 922.324 kb on - strandat 922.324 kb on - strandat 922.324 kb on - strandat 922.329 kb on + strandat 922.330 kb on - strandat 922.330 kb on - strandat 922.386 kb on + strandat 922.507 kb on + strandat 922.508 kb on - strandat 922.508 kb on - strandat 922.508 kb on - strandat 922.536 kb on - strandat 922.565 kb on + strandat 922.566 kb on - strandat 922.566 kb on - strandat 922.586 kb on + strandat 922.587 kb on - strandat 922.592 kb on + strandat 922.593 kb on - strandat 922.593 kb on - strandat 922.639 kb on - strand, within Echvi_0808at 922.639 kb on - strand, within Echvi_0808at 922.639 kb on - strand, within Echvi_0808at 922.639 kb on - strand, within Echvi_0808at 922.658 kb on + strand, within Echvi_0808at 922.659 kb on - strand, within Echvi_0808at 922.659 kb on - strand, within Echvi_0808at 922.660 kb on + strand, within Echvi_0808at 922.661 kb on - strand, within Echvi_0808at 922.661 kb on - strand, within Echvi_0808at 922.661 kb on - strand, within Echvi_0808at 922.661 kb on - strand, within Echvi_0808at 922.661 kb on - strandat 922.661 kb on - strand, within Echvi_0808at 922.661 kb on - strand, within Echvi_0808at 922.661 kb on - strand, within Echvi_0808at 922.664 kb on + strand, within Echvi_0808at 922.665 kb on - strand, within Echvi_0808at 922.665 kb on - strand, within Echvi_0808at 922.668 kb on - strand, within Echvi_0808at 922.669 kb on + strand, within Echvi_0808at 922.670 kb on - strand, within Echvi_0808at 922.673 kb on + strand, within Echvi_0808at 922.687 kb on + strand, within Echvi_0808at 922.693 kb on - strand, within Echvi_0808at 922.703 kb on + strand, within Echvi_0808at 922.703 kb on + strand, within Echvi_0808at 922.703 kb on + strand, within Echvi_0808at 922.712 kb on - strand, within Echvi_0808at 922.735 kb on + strand, within Echvi_0808at 922.766 kb on + strand, within Echvi_0808at 922.767 kb on - strand, within Echvi_0808at 922.769 kb on + strand, within Echvi_0808at 922.769 kb on + strand, within Echvi_0808at 922.769 kb on + strand, within Echvi_0808at 922.770 kb on - strand, within Echvi_0808at 922.770 kb on - strand, within Echvi_0808at 922.770 kb on - strand, within Echvi_0808at 922.770 kb on - strand, within Echvi_0808at 922.795 kb on - strand, within Echvi_0808at 922.797 kb on + strand, within Echvi_0808at 922.797 kb on + strand, within Echvi_0808at 922.798 kb on - strand, within Echvi_0808at 922.798 kb on - strand, within Echvi_0808at 922.798 kb on - strand, within Echvi_0808at 922.798 kb on - strand, within Echvi_0808at 922.845 kb on + strand, within Echvi_0808at 922.846 kb on - strand, within Echvi_0808at 922.846 kb on - strand, within Echvi_0808at 922.846 kb on - strand, within Echvi_0808at 922.848 kb on + strand, within Echvi_0808at 922.849 kb on - strand, within Echvi_0808at 922.871 kb on + strand, within Echvi_0808at 922.872 kb on - strand, within Echvi_0808at 922.885 kb on + strand, within Echvi_0808at 922.888 kb on + strand, within Echvi_0808at 922.889 kb on - strand, within Echvi_0808at 922.889 kb on - strand, within Echvi_0808at 922.889 kb on - strand, within Echvi_0808at 923.021 kb on + strand, within Echvi_0808at 923.022 kb on - strand, within Echvi_0808at 923.022 kb on - strand, within Echvi_0808at 923.031 kb on - strand, within Echvi_0808at 923.095 kb on + strand, within Echvi_0808at 923.109 kb on - strand, within Echvi_0808at 923.109 kb on - strand, within Echvi_0808at 923.109 kb on - strand, within Echvi_0808at 923.150 kb on + strand, within Echvi_0808at 923.150 kb on + strand, within Echvi_0808at 923.151 kb on - strand, within Echvi_0808at 923.151 kb on - strand, within Echvi_0808at 923.151 kb on - strand, within Echvi_0808at 923.151 kb on - strand, within Echvi_0808at 923.151 kb on - strand, within Echvi_0808at 923.257 kb on + strand, within Echvi_0808at 923.341 kb on - strand, within Echvi_0808at 923.369 kb on + strand, within Echvi_0808at 923.369 kb on + strand, within Echvi_0808at 923.370 kb on - strand, within Echvi_0808at 923.416 kb on + strand, within Echvi_0808at 923.419 kb on + strand, within Echvi_0808at 923.419 kb on + strand, within Echvi_0808at 923.420 kb on - strand, within Echvi_0808at 923.461 kb on - strand, within Echvi_0808at 923.477 kb on + strand, within Echvi_0808at 923.477 kb on + strand, within Echvi_0808at 923.478 kb on - strand, within Echvi_0808at 923.490 kb on + strand, within Echvi_0808at 923.490 kb on + strand, within Echvi_0808at 923.531 kb on + strand, within Echvi_0808at 923.531 kb on + strand, within Echvi_0808at 923.531 kb on + strand, within Echvi_0808at 923.532 kb on - strand, within Echvi_0808at 923.533 kb on + strand, within Echvi_0808at 923.534 kb on - strand, within Echvi_0808at 923.534 kb on - strand, within Echvi_0808at 923.534 kb on - strand, within Echvi_0808at 923.540 kb on + strand, within Echvi_0808at 923.593 kb on - strand, within Echvi_0808at 923.598 kb on + strand, within Echvi_0808at 923.598 kb on + strand, within Echvi_0808at 923.598 kb on + strand, within Echvi_0808at 923.640 kb on - strand, within Echvi_0808at 923.640 kb on - strand, within Echvi_0808at 923.704 kb on + strand, within Echvi_0808at 923.705 kb on - strand, within Echvi_0808at 923.712 kb on - strand, within Echvi_0808at 923.833 kb on + strand, within Echvi_0808at 923.875 kb on + strand, within Echvi_0808at 923.875 kb on + strand, within Echvi_0808at 923.876 kb on - strand, within Echvi_0808at 923.876 kb on - strand, within Echvi_0808at 923.900 kb on + strand, within Echvi_0808at 923.937 kb on - strand, within Echvi_0808at 923.960 kb on + strand, within Echvi_0808at 923.992 kb on + strand, within Echvi_0808at 923.992 kb on + strand, within Echvi_0808at 923.993 kb on - strand, within Echvi_0808at 923.993 kb on - strand, within Echvi_0808at 923.993 kb on - strand, within Echvi_0808at 923.993 kb on - strand, within Echvi_0808at 924.007 kb on + strand, within Echvi_0808at 924.008 kb on - strand, within Echvi_0808at 924.092 kb on + strand, within Echvi_0808at 924.093 kb on - strand, within Echvi_0808at 924.099 kb on + strand, within Echvi_0808at 924.100 kb on - strand, within Echvi_0808at 924.100 kb on - strand, within Echvi_0808at 924.358 kb on - strand, within Echvi_0808at 924.358 kb on - strand, within Echvi_0808at 924.362 kb on + strand, within Echvi_0808at 924.362 kb on + strand, within Echvi_0808at 924.483 kb on + strand, within Echvi_0808at 924.484 kb on - strand, within Echvi_0808at 924.518 kb on + strand, within Echvi_0808at 924.519 kb on - strand, within Echvi_0808at 924.529 kb on - strand, within Echvi_0808at 924.560 kb on + strand, within Echvi_0808at 924.560 kb on + strand, within Echvi_0808at 924.560 kb on + strand, within Echvi_0808at 924.561 kb on - strand, within Echvi_0808at 924.561 kb on - strand, within Echvi_0808at 924.563 kb on + strand, within Echvi_0808at 924.564 kb on - strand, within Echvi_0808at 924.564 kb on - strand, within Echvi_0808at 924.564 kb on - strand, within Echvi_0808at 924.567 kb on - strand, within Echvi_0808at 924.595 kb on + strand, within Echvi_0808at 924.596 kb on - strand, within Echvi_0808at 924.596 kb on - strand, within Echvi_0808at 924.630 kb on + strand, within Echvi_0808at 924.702 kb on + strandat 924.726 kb on - strandat 924.726 kb on - strandat 924.727 kb on + strandat 924.728 kb on - strandat 924.728 kb on - strandat 924.742 kb on - strandat 924.757 kb on - strandat 924.757 kb on - strandat 924.844 kb on + strandat 924.891 kb on - strandat 924.922 kb on - strandat 924.922 kb on - strandat 924.922 kb on - strandat 924.926 kb on - strandat 924.931 kb on - strandat 924.931 kb on - strandat 924.931 kb on - strandat 925.006 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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922,004 + +0.6
922,047 + +0.7
922,142 + +0.1
922,142 + +0.0
922,173 + -0.0
922,173 + -0.6
922,173 + -0.0
922,176 + +0.0
922,177 - +3.2
922,185 + -1.1
922,186 - +3.9
922,188 + -1.3
922,188 + +1.4
922,189 - +2.9
922,189 - +3.1
922,189 - +3.2
922,262 + +1.1
922,262 + +1.7
922,263 - +3.6
922,308 - +3.4
922,308 - +3.4
922,308 - +1.7
922,311 + -0.1
922,311 + +0.1
922,312 - +3.1
922,312 - +2.5
922,312 - +2.2
922,312 - +4.0
922,323 + -0.6
922,324 - +4.0
922,324 - +4.1
922,324 - +3.5
922,324 - +4.0
922,324 - +3.4
922,324 - +2.9
922,329 + +0.9
922,330 - +2.4
922,330 - +2.9
922,386 + +1.4
922,507 + +2.9
922,508 - +2.7
922,508 - +2.5
922,508 - +3.8
922,536 - +3.0
922,565 + +1.4
922,566 - +3.1
922,566 - +3.4
922,586 + +0.5
922,587 - +2.9
922,592 + +0.9
922,593 - +3.0
922,593 - +3.9
922,639 - Echvi_0808 0.12 +4.7
922,639 - Echvi_0808 0.12 +3.8
922,639 - Echvi_0808 0.12 +3.3
922,639 - Echvi_0808 0.12 +3.2
922,658 + Echvi_0808 0.12 +1.8
922,659 - Echvi_0808 0.12 +3.2
922,659 - Echvi_0808 0.12 +2.2
922,660 + Echvi_0808 0.13 +1.1
922,661 - Echvi_0808 0.13 +3.5
922,661 - Echvi_0808 0.13 +3.4
922,661 - Echvi_0808 0.13 +2.7
922,661 - Echvi_0808 0.13 +1.9
922,661 - +2.4
922,661 - Echvi_0808 0.13 +3.3
922,661 - Echvi_0808 0.13 +4.3
922,661 - Echvi_0808 0.13 +3.3
922,664 + Echvi_0808 0.13 +1.8
922,665 - Echvi_0808 0.13 +3.2
922,665 - Echvi_0808 0.13 +2.8
922,668 - Echvi_0808 0.13 +3.9
922,669 + Echvi_0808 0.13 +1.8
922,670 - Echvi_0808 0.13 +3.8
922,673 + Echvi_0808 0.13 +0.8
922,687 + Echvi_0808 0.14 +0.5
922,693 - Echvi_0808 0.14 +3.7
922,703 + Echvi_0808 0.14 +1.3
922,703 + Echvi_0808 0.14 -0.1
922,703 + Echvi_0808 0.14 +0.3
922,712 - Echvi_0808 0.15 +2.7
922,735 + Echvi_0808 0.15 +0.8
922,766 + Echvi_0808 0.17 +1.1
922,767 - Echvi_0808 0.17 +3.3
922,769 + Echvi_0808 0.17 +0.7
922,769 + Echvi_0808 0.17 +0.8
922,769 + Echvi_0808 0.17 +0.2
922,770 - Echvi_0808 0.17 +2.7
922,770 - Echvi_0808 0.17 +4.6
922,770 - Echvi_0808 0.17 +3.1
922,770 - Echvi_0808 0.17 +3.8
922,795 - Echvi_0808 0.18 +3.5
922,797 + Echvi_0808 0.18 +1.0
922,797 + Echvi_0808 0.18 -1.8
922,798 - Echvi_0808 0.18 +3.5
922,798 - Echvi_0808 0.18 +3.7
922,798 - Echvi_0808 0.18 +3.0
922,798 - Echvi_0808 0.18 +2.9
922,845 + Echvi_0808 0.20 +1.7
922,846 - Echvi_0808 0.20 +5.5
922,846 - Echvi_0808 0.20 +2.8
922,846 - Echvi_0808 0.20 +3.5
922,848 + Echvi_0808 0.20 +0.7
922,849 - Echvi_0808 0.20 +4.0
922,871 + Echvi_0808 0.21 -0.4
922,872 - Echvi_0808 0.21 +2.8
922,885 + Echvi_0808 0.21 +0.6
922,888 + Echvi_0808 0.21 -0.1
922,889 - Echvi_0808 0.21 +3.5
922,889 - Echvi_0808 0.21 +0.4
922,889 - Echvi_0808 0.21 -0.4
923,021 + Echvi_0808 0.27 +0.7
923,022 - Echvi_0808 0.27 +2.9
923,022 - Echvi_0808 0.27 +3.5
923,031 - Echvi_0808 0.27 +4.0
923,095 + Echvi_0808 0.29 -0.6
923,109 - Echvi_0808 0.30 +3.7
923,109 - Echvi_0808 0.30 +3.7
923,109 - Echvi_0808 0.30 +3.6
923,150 + Echvi_0808 0.32 +0.5
923,150 + Echvi_0808 0.32 +0.5
923,151 - Echvi_0808 0.32 +3.4
923,151 - Echvi_0808 0.32 +2.9
923,151 - Echvi_0808 0.32 +4.0
923,151 - Echvi_0808 0.32 +4.3
923,151 - Echvi_0808 0.32 +4.8
923,257 + Echvi_0808 0.36 -1.3
923,341 - Echvi_0808 0.39 +4.0
923,369 + Echvi_0808 0.40 +0.7
923,369 + Echvi_0808 0.40 -2.0
923,370 - Echvi_0808 0.40 +4.2
923,416 + Echvi_0808 0.42 +0.1
923,419 + Echvi_0808 0.42 -0.7
923,419 + Echvi_0808 0.42 +0.2
923,420 - Echvi_0808 0.42 +3.1
923,461 - Echvi_0808 0.44 +3.3
923,477 + Echvi_0808 0.44 -0.1
923,477 + Echvi_0808 0.44 -1.6
923,478 - Echvi_0808 0.44 +2.4
923,490 + Echvi_0808 0.45 +1.1
923,490 + Echvi_0808 0.45 +2.4
923,531 + Echvi_0808 0.46 +0.5
923,531 + Echvi_0808 0.46 +2.9
923,531 + Echvi_0808 0.46 +0.2
923,532 - Echvi_0808 0.46 +4.0
923,533 + Echvi_0808 0.46 -1.0
923,534 - Echvi_0808 0.46 +2.9
923,534 - Echvi_0808 0.46 +4.7
923,534 - Echvi_0808 0.46 +3.7
923,540 + Echvi_0808 0.47 -0.1
923,593 - Echvi_0808 0.49 +3.6
923,598 + Echvi_0808 0.49 +0.0
923,598 + Echvi_0808 0.49 +0.9
923,598 + Echvi_0808 0.49 +1.1
923,640 - Echvi_0808 0.51 +3.1
923,640 - Echvi_0808 0.51 +3.2
923,704 + Echvi_0808 0.53 -1.5
923,705 - Echvi_0808 0.53 +3.2
923,712 - Echvi_0808 0.53 +3.5
923,833 + Echvi_0808 0.58 -0.2
923,875 + Echvi_0808 0.60 +1.1
923,875 + Echvi_0808 0.60 +0.4
923,876 - Echvi_0808 0.60 +2.8
923,876 - Echvi_0808 0.60 +3.2
923,900 + Echvi_0808 0.61 -0.5
923,937 - Echvi_0808 0.62 +2.7
923,960 + Echvi_0808 0.63 +0.1
923,992 + Echvi_0808 0.64 -0.3
923,992 + Echvi_0808 0.64 +0.3
923,993 - Echvi_0808 0.64 +3.0
923,993 - Echvi_0808 0.64 +3.0
923,993 - Echvi_0808 0.64 +3.7
923,993 - Echvi_0808 0.64 +3.5
924,007 + Echvi_0808 0.65 -0.3
924,008 - Echvi_0808 0.65 +2.9
924,092 + Echvi_0808 0.68 -0.1
924,093 - Echvi_0808 0.68 +3.3
924,099 + Echvi_0808 0.68 -0.4
924,100 - Echvi_0808 0.68 +4.0
924,100 - Echvi_0808 0.68 +3.6
924,358 - Echvi_0808 0.78 +4.8
924,358 - Echvi_0808 0.78 +3.3
924,362 + Echvi_0808 0.79 -1.1
924,362 + Echvi_0808 0.79 -0.4
924,483 + Echvi_0808 0.83 -0.4
924,484 - Echvi_0808 0.83 +3.3
924,518 + Echvi_0808 0.85 +1.0
924,519 - Echvi_0808 0.85 +4.0
924,529 - Echvi_0808 0.85 +4.1
924,560 + Echvi_0808 0.86 +0.9
924,560 + Echvi_0808 0.86 +0.7
924,560 + Echvi_0808 0.86 +0.4
924,561 - Echvi_0808 0.86 +3.4
924,561 - Echvi_0808 0.86 +2.7
924,563 + Echvi_0808 0.86 -0.7
924,564 - Echvi_0808 0.86 +3.9
924,564 - Echvi_0808 0.86 +3.6
924,564 - Echvi_0808 0.86 +4.2
924,567 - Echvi_0808 0.87 +3.4
924,595 + Echvi_0808 0.88 -1.1
924,596 - Echvi_0808 0.88 +4.6
924,596 - Echvi_0808 0.88 +3.4
924,630 + Echvi_0808 0.89 -0.1
924,702 + -2.7
924,726 - +3.3
924,726 - +4.0
924,727 + -1.1
924,728 - +4.4
924,728 - +0.1
924,742 - +4.0
924,757 - +3.3
924,757 - +4.0
924,844 + +0.6
924,891 - +2.9
924,922 - +3.9
924,922 - +4.0
924,922 - +2.4
924,926 - +3.6
924,931 - +3.8
924,931 - +4.0
924,931 - +3.5
925,006 - +2.6

Or see this region's nucleotide sequence