Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0414

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0413 and Echvi_0414 are separated by 94 nucleotidesEchvi_0414 and Echvi_0415 are separated by 14 nucleotides Echvi_0413: Echvi_0413 - Fic/DOC family., at 452,885 to 453,868 _0413 Echvi_0414: Echvi_0414 - hypothetical protein, at 453,963 to 454,847 _0414 Echvi_0415: Echvi_0415 - Site-specific recombinase XerD, at 454,862 to 456,175 _0415 Position (kb) 453 454 455Strain fitness (log2 ratio) -2 -1 0 1 2 3at 454.115 kb on - strand, within Echvi_0414at 454.367 kb on + strand, within Echvi_0414at 454.393 kb on + strand, within Echvi_0414at 454.395 kb on + strand, within Echvi_0414at 454.548 kb on + strand, within Echvi_0414at 454.548 kb on + strand, within Echvi_0414at 454.554 kb on + strand, within Echvi_0414at 454.554 kb on + strand, within Echvi_0414at 454.554 kb on + strand, within Echvi_0414at 454.554 kb on + strand, within Echvi_0414at 454.555 kb on - strand, within Echvi_0414at 454.555 kb on - strand, within Echvi_0414at 454.555 kb on - strand, within Echvi_0414at 454.555 kb on - strand, within Echvi_0414at 454.555 kb on - strand, within Echvi_0414at 454.591 kb on - strand, within Echvi_0414at 455.119 kb on + strand, within Echvi_0415at 455.119 kb on + strand, within Echvi_0415at 455.119 kb on + strand, within Echvi_0415at 455.123 kb on + strand, within Echvi_0415at 455.123 kb on + strand, within Echvi_0415at 455.123 kb on + strand, within Echvi_0415at 455.124 kb on - strand, within Echvi_0415at 455.124 kb on - strand, within Echvi_0415at 455.132 kb on + strand, within Echvi_0415at 455.132 kb on + strand, within Echvi_0415at 455.133 kb on - strand, within Echvi_0415at 455.133 kb on - strand, within Echvi_0415at 455.136 kb on + strand, within Echvi_0415at 455.137 kb on - strand, within Echvi_0415at 455.137 kb on - strand, within Echvi_0415at 455.137 kb on - strand, within Echvi_0415at 455.141 kb on - strand, within Echvi_0415at 455.141 kb on - strand, within Echvi_0415at 455.160 kb on - strand, within Echvi_0415at 455.190 kb on + strand, within Echvi_0415at 455.191 kb on - strand, within Echvi_0415at 455.195 kb on - strand, within Echvi_0415at 455.214 kb on + strand, within Echvi_0415at 455.232 kb on - strand, within Echvi_0415at 455.254 kb on + strand, within Echvi_0415at 455.284 kb on + strand, within Echvi_0415at 455.285 kb on - strand, within Echvi_0415at 455.350 kb on + strand, within Echvi_0415at 455.351 kb on - strand, within Echvi_0415at 455.374 kb on + strand, within Echvi_0415at 455.374 kb on + strand, within Echvi_0415at 455.375 kb on - strand, within Echvi_0415at 455.375 kb on - strand, within Echvi_0415at 455.396 kb on - strand, within Echvi_0415at 455.398 kb on - strand, within Echvi_0415at 455.433 kb on - strand, within Echvi_0415at 455.481 kb on - strand, within Echvi_0415at 455.481 kb on - strand, within Echvi_0415at 455.481 kb on - strand, within Echvi_0415at 455.505 kb on + strand, within Echvi_0415at 455.506 kb on - strand, within Echvi_0415at 455.506 kb on - strand, within Echvi_0415at 455.522 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.531 kb on + strand, within Echvi_0415at 455.532 kb on - strand, within Echvi_0415at 455.532 kb on - strand, within Echvi_0415at 455.532 kb on - strand, within Echvi_0415at 455.539 kb on + strand, within Echvi_0415at 455.582 kb on - strand, within Echvi_0415at 455.604 kb on - strand, within Echvi_0415at 455.638 kb on - strand, within Echvi_0415at 455.710 kb on + strand, within Echvi_0415at 455.710 kb on + strand, within Echvi_0415at 455.711 kb on - strand, within Echvi_0415at 455.749 kb on + strand, within Echvi_0415at 455.759 kb on - strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.760 kb on + strand, within Echvi_0415at 455.761 kb on - strand, within Echvi_0415at 455.761 kb on - strand, within Echvi_0415at 455.761 kb on - strand, within Echvi_0415at 455.761 kb on - strand, within Echvi_0415at 455.779 kb on - strand, within Echvi_0415at 455.832 kb on + strand, within Echvi_0415at 455.832 kb on + strand, within Echvi_0415at 455.832 kb on + strand, within Echvi_0415at 455.833 kb on - strand, within Echvi_0415at 455.833 kb on - strand, within Echvi_0415at 455.833 kb on - strand, within Echvi_0415at 455.837 kb on - strand, within Echvi_0415at 455.837 kb on - strand, within Echvi_0415at 455.837 kb on - strand, within Echvi_0415at 455.843 kb on + strand, within Echvi_0415

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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454,115 - Echvi_0414 0.17 -0.1
454,367 + Echvi_0414 0.46 +0.4
454,393 + Echvi_0414 0.49 +0.3
454,395 + Echvi_0414 0.49 +1.2
454,548 + Echvi_0414 0.66 +1.3
454,548 + Echvi_0414 0.66 +0.6
454,554 + Echvi_0414 0.67 -0.1
454,554 + Echvi_0414 0.67 -1.9
454,554 + Echvi_0414 0.67 +0.4
454,554 + Echvi_0414 0.67 +0.2
454,555 - Echvi_0414 0.67 +0.4
454,555 - Echvi_0414 0.67 -0.7
454,555 - Echvi_0414 0.67 +1.8
454,555 - Echvi_0414 0.67 -0.5
454,555 - Echvi_0414 0.67 +0.0
454,591 - Echvi_0414 0.71 +0.7
455,119 + Echvi_0415 0.20 +1.5
455,119 + Echvi_0415 0.20 -1.9
455,119 + Echvi_0415 0.20 -0.2
455,123 + Echvi_0415 0.20 +0.5
455,123 + Echvi_0415 0.20 -0.2
455,123 + Echvi_0415 0.20 -0.6
455,124 - Echvi_0415 0.20 -0.3
455,124 - Echvi_0415 0.20 -1.2
455,132 + Echvi_0415 0.21 -1.3
455,132 + Echvi_0415 0.21 +0.7
455,133 - Echvi_0415 0.21 -0.9
455,133 - Echvi_0415 0.21 +1.4
455,136 + Echvi_0415 0.21 -0.8
455,137 - Echvi_0415 0.21 +0.2
455,137 - Echvi_0415 0.21 +0.4
455,137 - Echvi_0415 0.21 -1.1
455,141 - Echvi_0415 0.21 +1.1
455,141 - Echvi_0415 0.21 -0.6
455,160 - Echvi_0415 0.23 +1.0
455,190 + Echvi_0415 0.25 +0.5
455,191 - Echvi_0415 0.25 +0.9
455,195 - Echvi_0415 0.25 -1.4
455,214 + Echvi_0415 0.27 -0.2
455,232 - Echvi_0415 0.28 -0.4
455,254 + Echvi_0415 0.30 +0.4
455,284 + Echvi_0415 0.32 +0.2
455,285 - Echvi_0415 0.32 +1.1
455,350 + Echvi_0415 0.37 +1.4
455,351 - Echvi_0415 0.37 +0.1
455,374 + Echvi_0415 0.39 -1.7
455,374 + Echvi_0415 0.39 +0.5
455,375 - Echvi_0415 0.39 +0.2
455,375 - Echvi_0415 0.39 -1.6
455,396 - Echvi_0415 0.41 +1.6
455,398 - Echvi_0415 0.41 -0.2
455,433 - Echvi_0415 0.43 -0.7
455,481 - Echvi_0415 0.47 -1.4
455,481 - Echvi_0415 0.47 -0.8
455,481 - Echvi_0415 0.47 -0.4
455,505 + Echvi_0415 0.49 +1.6
455,506 - Echvi_0415 0.49 -1.5
455,506 - Echvi_0415 0.49 +1.1
455,522 + Echvi_0415 0.50 +1.3
455,531 + Echvi_0415 0.51 -0.0
455,531 + Echvi_0415 0.51 -0.6
455,531 + Echvi_0415 0.51 -0.4
455,531 + Echvi_0415 0.51 +0.2
455,531 + Echvi_0415 0.51 +0.4
455,531 + Echvi_0415 0.51 +0.4
455,531 + Echvi_0415 0.51 -0.4
455,532 - Echvi_0415 0.51 -0.4
455,532 - Echvi_0415 0.51 -1.3
455,532 - Echvi_0415 0.51 -1.1
455,539 + Echvi_0415 0.52 -0.9
455,582 - Echvi_0415 0.55 -0.4
455,604 - Echvi_0415 0.56 +1.1
455,638 - Echvi_0415 0.59 -2.2
455,710 + Echvi_0415 0.65 +0.6
455,710 + Echvi_0415 0.65 -1.1
455,711 - Echvi_0415 0.65 +1.1
455,749 + Echvi_0415 0.68 +0.0
455,759 - Echvi_0415 0.68 +1.0
455,760 + Echvi_0415 0.68 +0.5
455,760 + Echvi_0415 0.68 -0.6
455,760 + Echvi_0415 0.68 -0.2
455,760 + Echvi_0415 0.68 -0.5
455,760 + Echvi_0415 0.68 -0.2
455,760 + Echvi_0415 0.68 +0.6
455,761 - Echvi_0415 0.68 -0.6
455,761 - Echvi_0415 0.68 +0.9
455,761 - Echvi_0415 0.68 -0.4
455,761 - Echvi_0415 0.68 +1.3
455,779 - Echvi_0415 0.70 +0.0
455,832 + Echvi_0415 0.74 +0.5
455,832 + Echvi_0415 0.74 -1.8
455,832 + Echvi_0415 0.74 +0.7
455,833 - Echvi_0415 0.74 -0.2
455,833 - Echvi_0415 0.74 +1.3
455,833 - Echvi_0415 0.74 -0.8
455,837 - Echvi_0415 0.74 -1.0
455,837 - Echvi_0415 0.74 +2.0
455,837 - Echvi_0415 0.74 -1.1
455,843 + Echvi_0415 0.75 +2.8

Or see this region's nucleotide sequence