Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0173

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0172 and Echvi_0173 are separated by 85 nucleotidesEchvi_0173 and Echvi_0174 are separated by 106 nucleotides Echvi_0172: Echvi_0172 - 23S rRNA (uracil-5-)-methyltransferase RumA, at 180,046 to 181,449 _0172 Echvi_0173: Echvi_0173 - hypothetical protein, at 181,535 to 181,909 _0173 Echvi_0174: Echvi_0174 - hypothetical protein, at 182,016 to 186,029 _0174 Position (kb) 181 182Strain fitness (log2 ratio) -2 -1 0 1 2at 180.591 kb on - strand, within Echvi_0172at 180.655 kb on - strand, within Echvi_0172at 180.702 kb on + strand, within Echvi_0172at 180.702 kb on + strand, within Echvi_0172at 180.703 kb on - strand, within Echvi_0172at 180.703 kb on - strand, within Echvi_0172at 180.706 kb on - strand, within Echvi_0172at 180.706 kb on - strand, within Echvi_0172at 180.801 kb on - strand, within Echvi_0172at 180.815 kb on - strand, within Echvi_0172at 180.864 kb on + strand, within Echvi_0172at 180.865 kb on - strand, within Echvi_0172at 180.883 kb on + strand, within Echvi_0172at 180.884 kb on - strand, within Echvi_0172at 180.884 kb on - strand, within Echvi_0172at 180.890 kb on + strand, within Echvi_0172at 180.908 kb on + strand, within Echvi_0172at 180.961 kb on + strand, within Echvi_0172at 180.962 kb on - strand, within Echvi_0172at 180.969 kb on - strand, within Echvi_0172at 180.973 kb on - strand, within Echvi_0172at 181.025 kb on + strand, within Echvi_0172at 181.025 kb on + strand, within Echvi_0172at 181.026 kb on - strand, within Echvi_0172at 181.026 kb on - strand, within Echvi_0172at 181.026 kb on - strand, within Echvi_0172at 181.026 kb on - strand, within Echvi_0172at 181.027 kb on + strand, within Echvi_0172at 181.027 kb on + strand, within Echvi_0172at 181.028 kb on - strand, within Echvi_0172at 181.028 kb on - strand, within Echvi_0172at 181.028 kb on - strand, within Echvi_0172at 181.029 kb on + strand, within Echvi_0172at 181.029 kb on + strand, within Echvi_0172at 181.029 kb on + strand, within Echvi_0172at 181.029 kb on + strand, within Echvi_0172at 181.029 kb on + strand, within Echvi_0172at 181.030 kb on - strand, within Echvi_0172at 181.093 kb on + strand, within Echvi_0172at 181.126 kb on - strand, within Echvi_0172at 181.268 kb on + strand, within Echvi_0172at 181.268 kb on + strand, within Echvi_0172at 181.268 kb on + strand, within Echvi_0172at 181.269 kb on - strand, within Echvi_0172at 181.275 kb on + strand, within Echvi_0172at 181.280 kb on + strand, within Echvi_0172at 181.283 kb on + strand, within Echvi_0172at 181.284 kb on - strand, within Echvi_0172at 181.309 kb on + strandat 181.355 kb on + strandat 181.356 kb on - strandat 181.367 kb on - strandat 181.374 kb on - strandat 181.374 kb on - strandat 181.374 kb on - strandat 181.374 kb on - strandat 181.378 kb on - strandat 181.378 kb on - strandat 181.411 kb on + strandat 181.411 kb on + strandat 181.412 kb on - strandat 181.430 kb on + strandat 181.430 kb on + strandat 181.431 kb on - strandat 181.434 kb on - strandat 181.434 kb on - strandat 181.447 kb on + strandat 181.465 kb on + strandat 181.465 kb on + strandat 181.465 kb on + strandat 181.466 kb on - strandat 181.466 kb on - strandat 181.466 kb on - strandat 181.466 kb on - strandat 181.466 kb on - strandat 181.467 kb on + strandat 181.467 kb on + strandat 181.469 kb on + strandat 181.470 kb on - strandat 181.477 kb on + strandat 181.477 kb on + strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.478 kb on - strandat 181.489 kb on + strandat 181.490 kb on + strandat 181.490 kb on + strandat 181.491 kb on - strandat 181.491 kb on - strandat 181.491 kb on - strandat 181.496 kb on + strandat 181.612 kb on + strand, within Echvi_0173at 181.640 kb on - strand, within Echvi_0173at 181.729 kb on + strand, within Echvi_0173at 181.729 kb on + strand, within Echvi_0173at 181.730 kb on - strand, within Echvi_0173at 181.735 kb on - strand, within Echvi_0173at 181.745 kb on + strand, within Echvi_0173at 181.746 kb on - strand, within Echvi_0173at 181.748 kb on + strand, within Echvi_0173at 181.842 kb on - strand, within Echvi_0173at 181.858 kb on - strand, within Echvi_0173at 181.886 kb on + strandat 181.907 kb on + strandat 181.987 kb on + strandat 181.988 kb on - strandat 182.072 kb on + strandat 182.072 kb on + strandat 182.073 kb on - strandat 182.098 kb on + strandat 182.098 kb on + strandat 182.171 kb on + strandat 182.232 kb on - strandat 182.237 kb on + strandat 182.268 kb on + strandat 182.269 kb on - strandat 182.317 kb on + strandat 182.321 kb on + strandat 182.322 kb on - strandat 182.370 kb on + strandat 182.405 kb on + strandat 182.406 kb on - strandat 182.442 kb on - strand, within Echvi_0174at 182.463 kb on - strand, within Echvi_0174at 182.463 kb on - strand, within Echvi_0174at 182.466 kb on - strand, within Echvi_0174at 182.478 kb on + strand, within Echvi_0174at 182.481 kb on + strand, within Echvi_0174at 182.481 kb on + strand, within Echvi_0174at 182.482 kb on - strand, within Echvi_0174at 182.482 kb on - strand, within Echvi_0174at 182.483 kb on + strand, within Echvi_0174at 182.484 kb on - strand, within Echvi_0174at 182.507 kb on + strand, within Echvi_0174at 182.510 kb on + strand, within Echvi_0174at 182.511 kb on - strand, within Echvi_0174at 182.511 kb on - strand, within Echvi_0174at 182.513 kb on + strand, within Echvi_0174at 182.569 kb on - strand, within Echvi_0174at 182.577 kb on - strand, within Echvi_0174at 182.577 kb on - strand, within Echvi_0174at 182.611 kb on + strand, within Echvi_0174at 182.612 kb on - strand, within Echvi_0174at 182.667 kb on - strand, within Echvi_0174at 182.667 kb on - strand, within Echvi_0174at 182.732 kb on + strand, within Echvi_0174at 182.738 kb on + strand, within Echvi_0174at 182.738 kb on + strand, within Echvi_0174at 182.739 kb on - strand, within Echvi_0174at 182.741 kb on + strand, within Echvi_0174at 182.753 kb on + strand, within Echvi_0174at 182.798 kb on + strand, within Echvi_0174at 182.799 kb on - strand, within Echvi_0174at 182.799 kb on - strand, within Echvi_0174at 182.835 kb on - strand, within Echvi_0174at 182.904 kb on + strand, within Echvi_0174at 182.904 kb on + strand, within Echvi_0174at 182.908 kb on + strand, within Echvi_0174

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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180,591 - Echvi_0172 0.39 -0.4
180,655 - Echvi_0172 0.43 +0.0
180,702 + Echvi_0172 0.47 -0.4
180,702 + Echvi_0172 0.47 -0.6
180,703 - Echvi_0172 0.47 -1.2
180,703 - Echvi_0172 0.47 -1.0
180,706 - Echvi_0172 0.47 -0.2
180,706 - Echvi_0172 0.47 -0.4
180,801 - Echvi_0172 0.54 -0.8
180,815 - Echvi_0172 0.55 +0.2
180,864 + Echvi_0172 0.58 -1.9
180,865 - Echvi_0172 0.58 -1.4
180,883 + Echvi_0172 0.60 -0.8
180,884 - Echvi_0172 0.60 +0.0
180,884 - Echvi_0172 0.60 +1.0
180,890 + Echvi_0172 0.60 -0.2
180,908 + Echvi_0172 0.61 -0.4
180,961 + Echvi_0172 0.65 +0.5
180,962 - Echvi_0172 0.65 -1.0
180,969 - Echvi_0172 0.66 +0.4
180,973 - Echvi_0172 0.66 +1.5
181,025 + Echvi_0172 0.70 -0.9
181,025 + Echvi_0172 0.70 +0.5
181,026 - Echvi_0172 0.70 +0.1
181,026 - Echvi_0172 0.70 -1.9
181,026 - Echvi_0172 0.70 +0.1
181,026 - Echvi_0172 0.70 +0.1
181,027 + Echvi_0172 0.70 -0.1
181,027 + Echvi_0172 0.70 +0.8
181,028 - Echvi_0172 0.70 +1.0
181,028 - Echvi_0172 0.70 +0.6
181,028 - Echvi_0172 0.70 +0.6
181,029 + Echvi_0172 0.70 -0.1
181,029 + Echvi_0172 0.70 +0.4
181,029 + Echvi_0172 0.70 +0.6
181,029 + Echvi_0172 0.70 +0.0
181,029 + Echvi_0172 0.70 -0.3
181,030 - Echvi_0172 0.70 -1.7
181,093 + Echvi_0172 0.75 +0.4
181,126 - Echvi_0172 0.77 +1.1
181,268 + Echvi_0172 0.87 +0.2
181,268 + Echvi_0172 0.87 -0.3
181,268 + Echvi_0172 0.87 +0.0
181,269 - Echvi_0172 0.87 -0.7
181,275 + Echvi_0172 0.88 -1.0
181,280 + Echvi_0172 0.88 -0.8
181,283 + Echvi_0172 0.88 +0.0
181,284 - Echvi_0172 0.88 -1.2
181,309 + -0.8
181,355 + -1.5
181,356 - -1.4
181,367 - -0.6
181,374 - -0.7
181,374 - -0.1
181,374 - +1.9
181,374 - -0.1
181,378 - -2.4
181,378 - -0.7
181,411 + -0.3
181,411 + +0.8
181,412 - +0.8
181,430 + -1.0
181,430 + +0.6
181,431 - -1.7
181,434 - +1.4
181,434 - +0.2
181,447 + -0.2
181,465 + -1.5
181,465 + -0.2
181,465 + -0.8
181,466 - -0.9
181,466 - -1.3
181,466 - +0.4
181,466 - +0.6
181,466 - -0.8
181,467 + +0.2
181,467 + -1.1
181,469 + +1.2
181,470 - -1.0
181,477 + +0.2
181,477 + -0.3
181,478 - -0.4
181,478 - +0.1
181,478 - -2.3
181,478 - +0.1
181,489 + -2.0
181,490 + -1.1
181,490 + +0.7
181,491 - -0.9
181,491 - -0.7
181,491 - +1.0
181,496 + -0.4
181,612 + Echvi_0173 0.21 -0.5
181,640 - Echvi_0173 0.28 +0.0
181,729 + Echvi_0173 0.52 -1.1
181,729 + Echvi_0173 0.52 -0.8
181,730 - Echvi_0173 0.52 -1.4
181,735 - Echvi_0173 0.53 -0.6
181,745 + Echvi_0173 0.56 -1.3
181,746 - Echvi_0173 0.56 +0.4
181,748 + Echvi_0173 0.57 -2.3
181,842 - Echvi_0173 0.82 -1.1
181,858 - Echvi_0173 0.86 -0.3
181,886 + +0.6
181,907 + -0.4
181,987 + +0.6
181,988 - -1.1
182,072 + +0.0
182,072 + -0.4
182,073 - -0.2
182,098 + -0.8
182,098 + +0.1
182,171 + -0.9
182,232 - +0.7
182,237 + +0.7
182,268 + -1.0
182,269 - +1.8
182,317 + -1.4
182,321 + -0.4
182,322 - -0.6
182,370 + -0.3
182,405 + +1.4
182,406 - +0.6
182,442 - Echvi_0174 0.11 -1.0
182,463 - Echvi_0174 0.11 -0.0
182,463 - Echvi_0174 0.11 +1.7
182,466 - Echvi_0174 0.11 -0.2
182,478 + Echvi_0174 0.12 +0.1
182,481 + Echvi_0174 0.12 -0.2
182,481 + Echvi_0174 0.12 -0.3
182,482 - Echvi_0174 0.12 +0.6
182,482 - Echvi_0174 0.12 -0.2
182,483 + Echvi_0174 0.12 -1.9
182,484 - Echvi_0174 0.12 +1.6
182,507 + Echvi_0174 0.12 +0.4
182,510 + Echvi_0174 0.12 -0.4
182,511 - Echvi_0174 0.12 +0.4
182,511 - Echvi_0174 0.12 -0.9
182,513 + Echvi_0174 0.12 +0.1
182,569 - Echvi_0174 0.14 -0.6
182,577 - Echvi_0174 0.14 +1.1
182,577 - Echvi_0174 0.14 +0.1
182,611 + Echvi_0174 0.15 -0.8
182,612 - Echvi_0174 0.15 -0.8
182,667 - Echvi_0174 0.16 +0.2
182,667 - Echvi_0174 0.16 -0.4
182,732 + Echvi_0174 0.18 -0.4
182,738 + Echvi_0174 0.18 -0.3
182,738 + Echvi_0174 0.18 +0.7
182,739 - Echvi_0174 0.18 -0.1
182,741 + Echvi_0174 0.18 -0.4
182,753 + Echvi_0174 0.18 -0.2
182,798 + Echvi_0174 0.19 +0.5
182,799 - Echvi_0174 0.20 +0.0
182,799 - Echvi_0174 0.20 +1.7
182,835 - Echvi_0174 0.20 +1.7
182,904 + Echvi_0174 0.22 -0.3
182,904 + Echvi_0174 0.22 -0.6
182,908 + Echvi_0174 0.22 -0.8

Or see this region's nucleotide sequence