Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20530

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20520 and CA264_20525 are separated by 46 nucleotidesCA264_20525 and CA264_20530 are separated by 23 nucleotidesCA264_20530 and CA264_20535 are separated by 48 nucleotidesCA264_20535 and CA264_20540 are separated by 193 nucleotides CA264_20520: CA264_20520 - hypothetical protein, at 4,728,348 to 4,728,821 _20520 CA264_20525: CA264_20525 - prenyltransferase, at 4,728,868 to 4,729,776 _20525 CA264_20530: CA264_20530 - hypothetical protein, at 4,729,800 to 4,730,687 _20530 CA264_20535: CA264_20535 - hypothetical protein, at 4,730,736 to 4,731,239 _20535 CA264_20540: CA264_20540 - transglycosylase, at 4,731,433 to 4,733,763 _20540 Position (kb) 4729 4730 4731Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4728.811 kb on - strandat 4728.841 kb on + strandat 4728.841 kb on + strandat 4728.841 kb on + strandat 4728.841 kb on + strandat 4728.842 kb on - strandat 4728.842 kb on - strandat 4728.842 kb on - strandat 4728.843 kb on + strandat 4728.843 kb on + strandat 4728.843 kb on + strandat 4728.844 kb on - strandat 4728.852 kb on - strandat 4728.920 kb on - strandat 4729.064 kb on + strand, within CA264_20525at 4729.065 kb on - strand, within CA264_20525at 4729.096 kb on + strand, within CA264_20525at 4729.119 kb on - strand, within CA264_20525at 4729.291 kb on + strand, within CA264_20525at 4729.308 kb on - strand, within CA264_20525at 4729.308 kb on - strand, within CA264_20525at 4729.308 kb on - strand, within CA264_20525at 4729.308 kb on - strand, within CA264_20525at 4729.308 kb on - strand, within CA264_20525at 4729.382 kb on + strand, within CA264_20525at 4729.410 kb on - strand, within CA264_20525at 4729.468 kb on + strand, within CA264_20525at 4729.556 kb on + strand, within CA264_20525at 4729.556 kb on + strand, within CA264_20525at 4729.569 kb on - strand, within CA264_20525at 4729.578 kb on + strand, within CA264_20525at 4729.603 kb on + strand, within CA264_20525at 4729.604 kb on - strand, within CA264_20525at 4729.682 kb on + strand, within CA264_20525at 4729.683 kb on - strand, within CA264_20525at 4729.762 kb on - strandat 4729.845 kb on + strandat 4729.914 kb on + strand, within CA264_20530at 4729.915 kb on - strand, within CA264_20530at 4729.977 kb on - strand, within CA264_20530at 4730.005 kb on + strand, within CA264_20530at 4730.061 kb on + strand, within CA264_20530at 4730.061 kb on + strand, within CA264_20530at 4730.269 kb on - strand, within CA264_20530at 4730.269 kb on - strand, within CA264_20530at 4730.270 kb on + strand, within CA264_20530at 4730.306 kb on - strand, within CA264_20530at 4730.311 kb on + strand, within CA264_20530at 4730.346 kb on - strand, within CA264_20530at 4730.488 kb on + strand, within CA264_20530at 4730.715 kb on + strandat 4730.716 kb on - strandat 4730.729 kb on + strandat 4730.730 kb on - strandat 4730.790 kb on - strand, within CA264_20535at 4731.082 kb on - strand, within CA264_20535at 4731.094 kb on - strand, within CA264_20535at 4731.131 kb on + strand, within CA264_20535at 4731.133 kb on + strand, within CA264_20535at 4731.133 kb on + strand, within CA264_20535at 4731.134 kb on - strand, within CA264_20535at 4731.157 kb on + strand, within CA264_20535at 4731.276 kb on + strandat 4731.278 kb on + strandat 4731.339 kb on - strandat 4731.339 kb on - strandat 4731.394 kb on + strandat 4731.542 kb on - strandat 4731.559 kb on + strandat 4731.559 kb on + strandat 4731.559 kb on + strandat 4731.560 kb on - strandat 4731.571 kb on + strandat 4731.572 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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4,728,811 - +0.2
4,728,841 + -0.4
4,728,841 + -0.7
4,728,841 + -0.0
4,728,841 + -0.2
4,728,842 - +0.7
4,728,842 - -1.8
4,728,842 - +0.8
4,728,843 + -0.1
4,728,843 + +0.2
4,728,843 + -0.5
4,728,844 - +0.4
4,728,852 - +0.0
4,728,920 - +1.3
4,729,064 + CA264_20525 0.22 -0.0
4,729,065 - CA264_20525 0.22 +0.0
4,729,096 + CA264_20525 0.25 -0.5
4,729,119 - CA264_20525 0.28 +0.8
4,729,291 + CA264_20525 0.47 -0.5
4,729,308 - CA264_20525 0.48 +0.3
4,729,308 - CA264_20525 0.48 -0.3
4,729,308 - CA264_20525 0.48 -0.6
4,729,308 - CA264_20525 0.48 -0.2
4,729,308 - CA264_20525 0.48 -0.0
4,729,382 + CA264_20525 0.57 -0.8
4,729,410 - CA264_20525 0.60 -0.6
4,729,468 + CA264_20525 0.66 +0.1
4,729,556 + CA264_20525 0.76 -1.3
4,729,556 + CA264_20525 0.76 -0.7
4,729,569 - CA264_20525 0.77 +0.5
4,729,578 + CA264_20525 0.78 -1.2
4,729,603 + CA264_20525 0.81 -0.8
4,729,604 - CA264_20525 0.81 -1.1
4,729,682 + CA264_20525 0.90 -1.5
4,729,683 - CA264_20525 0.90 -0.3
4,729,762 - -0.4
4,729,845 + -1.1
4,729,914 + CA264_20530 0.13 +0.2
4,729,915 - CA264_20530 0.13 -0.3
4,729,977 - CA264_20530 0.20 -0.4
4,730,005 + CA264_20530 0.23 +1.0
4,730,061 + CA264_20530 0.29 +2.2
4,730,061 + CA264_20530 0.29 -0.5
4,730,269 - CA264_20530 0.53 -0.8
4,730,269 - CA264_20530 0.53 -0.2
4,730,270 + CA264_20530 0.53 -1.1
4,730,306 - CA264_20530 0.57 +0.3
4,730,311 + CA264_20530 0.58 -2.0
4,730,346 - CA264_20530 0.61 -0.7
4,730,488 + CA264_20530 0.77 -1.0
4,730,715 + -1.7
4,730,716 - -0.3
4,730,729 + -1.0
4,730,730 - -0.0
4,730,790 - CA264_20535 0.11 -0.2
4,731,082 - CA264_20535 0.69 -0.8
4,731,094 - CA264_20535 0.71 -0.6
4,731,131 + CA264_20535 0.78 -0.0
4,731,133 + CA264_20535 0.79 -1.5
4,731,133 + CA264_20535 0.79 +0.4
4,731,134 - CA264_20535 0.79 -0.1
4,731,157 + CA264_20535 0.84 -0.5
4,731,276 + -1.9
4,731,278 + -2.8
4,731,339 - -1.3
4,731,339 - -0.1
4,731,394 + +0.9
4,731,542 - +0.1
4,731,559 + +0.9
4,731,559 + +0.2
4,731,559 + -0.6
4,731,560 - +0.9
4,731,571 + +0.2
4,731,572 - -0.2

Or see this region's nucleotide sequence