Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20050

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_20040 and CA264_20045 are separated by 7 nucleotidesCA264_20045 and CA264_20050 overlap by 17 nucleotidesCA264_20050 and CA264_20055 are separated by 11 nucleotides CA264_20040: CA264_20040 - hypothetical protein, at 4,619,680 to 4,620,483 _20040 CA264_20045: CA264_20045 - UDP-2,3-diacylglucosamine hydrolase, at 4,620,491 to 4,621,261 _20045 CA264_20050: CA264_20050 - hypothetical protein, at 4,621,245 to 4,621,898 _20050 CA264_20055: CA264_20055 - peptidase M41, at 4,621,910 to 4,624,033 _20055 Position (kb) 4621 4622Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4620.262 kb on + strand, within CA264_20040at 4620.263 kb on - strand, within CA264_20040at 4620.288 kb on - strand, within CA264_20040at 4620.350 kb on + strand, within CA264_20040at 4620.350 kb on + strand, within CA264_20040at 4620.351 kb on - strand, within CA264_20040at 4620.352 kb on + strand, within CA264_20040at 4620.352 kb on + strand, within CA264_20040at 4620.352 kb on + strand, within CA264_20040at 4620.352 kb on + strand, within CA264_20040at 4620.352 kb on + strand, within CA264_20040at 4620.353 kb on - strand, within CA264_20040at 4620.353 kb on - strand, within CA264_20040at 4620.353 kb on - strand, within CA264_20040at 4620.353 kb on - strand, within CA264_20040at 4620.353 kb on - strand, within CA264_20040at 4620.353 kb on - strand, within CA264_20040at 4620.393 kb on + strand, within CA264_20040at 4620.402 kb on + strand, within CA264_20040at 4620.402 kb on + strand, within CA264_20040at 4620.402 kb on + strand, within CA264_20040at 4620.403 kb on - strandat 4620.473 kb on - strandat 4620.473 kb on - strandat 4620.482 kb on - strandat 4620.482 kb on - strandat 4620.483 kb on + strandat 4620.484 kb on - strandat 4621.305 kb on + strandat 4621.381 kb on + strand, within CA264_20050at 4621.381 kb on + strand, within CA264_20050at 4621.382 kb on - strand, within CA264_20050at 4621.382 kb on - strand, within CA264_20050at 4621.600 kb on - strand, within CA264_20050at 4621.681 kb on + strand, within CA264_20050at 4621.682 kb on - strand, within CA264_20050at 4621.717 kb on + strand, within CA264_20050at 4621.717 kb on + strand, within CA264_20050at 4621.718 kb on - strand, within CA264_20050at 4621.722 kb on - strand, within CA264_20050at 4621.786 kb on - strand, within CA264_20050at 4621.867 kb on - strandat 4621.869 kb on + strandat 4621.869 kb on + strandat 4621.873 kb on - strandat 4621.895 kb on - strandat 4621.928 kb on + strandat 4621.928 kb on + strandat 4621.929 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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4,620,262 + CA264_20040 0.72 -1.5
4,620,263 - CA264_20040 0.73 -0.0
4,620,288 - CA264_20040 0.76 -0.7
4,620,350 + CA264_20040 0.83 -3.1
4,620,350 + CA264_20040 0.83 -1.8
4,620,351 - CA264_20040 0.83 -1.6
4,620,352 + CA264_20040 0.84 -0.4
4,620,352 + CA264_20040 0.84 -1.8
4,620,352 + CA264_20040 0.84 -4.0
4,620,352 + CA264_20040 0.84 -1.8
4,620,352 + CA264_20040 0.84 -0.8
4,620,353 - CA264_20040 0.84 -0.6
4,620,353 - CA264_20040 0.84 -0.2
4,620,353 - CA264_20040 0.84 +2.1
4,620,353 - CA264_20040 0.84 -0.9
4,620,353 - CA264_20040 0.84 -0.4
4,620,353 - CA264_20040 0.84 +1.4
4,620,393 + CA264_20040 0.89 -0.9
4,620,402 + CA264_20040 0.90 -1.6
4,620,402 + CA264_20040 0.90 +0.7
4,620,402 + CA264_20040 0.90 -2.4
4,620,403 - -0.3
4,620,473 - -2.1
4,620,473 - +2.2
4,620,482 - -2.1
4,620,482 - +1.6
4,620,483 + -0.0
4,620,484 - -2.4
4,621,305 + -0.8
4,621,381 + CA264_20050 0.21 -0.5
4,621,381 + CA264_20050 0.21 -1.5
4,621,382 - CA264_20050 0.21 +0.2
4,621,382 - CA264_20050 0.21 -1.7
4,621,600 - CA264_20050 0.54 -1.1
4,621,681 + CA264_20050 0.67 -0.4
4,621,682 - CA264_20050 0.67 -0.2
4,621,717 + CA264_20050 0.72 -1.6
4,621,717 + CA264_20050 0.72 -0.1
4,621,718 - CA264_20050 0.72 -1.8
4,621,722 - CA264_20050 0.73 -1.3
4,621,786 - CA264_20050 0.83 -1.2
4,621,867 - +0.6
4,621,869 + -0.3
4,621,869 + -2.0
4,621,873 - -2.7
4,621,895 - +0.2
4,621,928 + +1.6
4,621,928 + -1.2
4,621,929 - -0.2

Or see this region's nucleotide sequence