Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19885

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19875 and CA264_19880 are separated by 88 nucleotidesCA264_19880 and CA264_19885 overlap by 4 nucleotidesCA264_19885 and CA264_19890 are separated by 82 nucleotidesCA264_19890 and CA264_19895 are separated by 59 nucleotides CA264_19875: CA264_19875 - RNA methyltransferase, at 4,586,099 to 4,586,428 _19875 CA264_19880: CA264_19880 - potassium transporter KtrA, at 4,586,517 to 4,587,209 _19880 CA264_19885: CA264_19885 - uridine kinase, at 4,587,206 to 4,587,826 _19885 CA264_19890: CA264_19890 - non-canonical purine NTP pyrophosphatase, at 4,587,909 to 4,588,487 _19890 CA264_19895: CA264_19895 - phosphoribosyltransferase, at 4,588,547 to 4,589,062 _19895 Position (kb) 4587 4588Strain fitness (log2 ratio) -3 -2 -1 0 1at 4586.283 kb on - strand, within CA264_19875at 4586.294 kb on + strand, within CA264_19875at 4586.475 kb on + strandat 4586.475 kb on + strandat 4586.476 kb on - strandat 4586.476 kb on - strandat 4586.488 kb on - strandat 4586.518 kb on + strandat 4587.215 kb on + strandat 4587.228 kb on - strandat 4587.228 kb on - strandat 4587.232 kb on - strandat 4587.232 kb on - strandat 4587.303 kb on + strand, within CA264_19885at 4587.303 kb on + strand, within CA264_19885at 4587.311 kb on - strand, within CA264_19885at 4587.387 kb on - strand, within CA264_19885at 4587.503 kb on + strand, within CA264_19885at 4587.543 kb on - strand, within CA264_19885at 4587.543 kb on - strand, within CA264_19885at 4587.543 kb on - strand, within CA264_19885at 4587.545 kb on + strand, within CA264_19885at 4587.566 kb on - strand, within CA264_19885at 4587.566 kb on - strand, within CA264_19885at 4587.566 kb on - strand, within CA264_19885at 4587.658 kb on + strand, within CA264_19885at 4587.659 kb on - strand, within CA264_19885at 4587.706 kb on - strand, within CA264_19885at 4587.706 kb on - strand, within CA264_19885at 4587.706 kb on - strand, within CA264_19885at 4587.761 kb on - strand, within CA264_19885at 4587.834 kb on + strandat 4587.870 kb on + strandat 4587.870 kb on + strandat 4587.870 kb on + strandat 4587.871 kb on - strandat 4587.871 kb on - strandat 4587.872 kb on + strandat 4587.872 kb on + strandat 4587.873 kb on - strandat 4587.873 kb on - strandat 4587.873 kb on - strandat 4587.873 kb on - strandat 4587.873 kb on - strandat 4587.873 kb on - strandat 4587.885 kb on + strandat 4587.885 kb on + strandat 4587.897 kb on - strandat 4588.022 kb on + strand, within CA264_19890at 4588.072 kb on - strand, within CA264_19890at 4588.073 kb on + strand, within CA264_19890at 4588.073 kb on + strand, within CA264_19890at 4588.074 kb on - strand, within CA264_19890at 4588.074 kb on - strand, within CA264_19890at 4588.074 kb on - strand, within CA264_19890at 4588.238 kb on - strand, within CA264_19890at 4588.238 kb on - strand, within CA264_19890at 4588.304 kb on + strand, within CA264_19890at 4588.322 kb on - strand, within CA264_19890at 4588.378 kb on - strand, within CA264_19890at 4588.415 kb on - strand, within CA264_19890at 4588.415 kb on - strand, within CA264_19890at 4588.511 kb on + strandat 4588.511 kb on + strandat 4588.511 kb on + strandat 4588.511 kb on + strandat 4588.511 kb on + strandat 4588.511 kb on + strandat 4588.511 kb on + strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.512 kb on - strandat 4588.513 kb on + strandat 4588.513 kb on + strandat 4588.514 kb on - strandat 4588.514 kb on - strandat 4588.514 kb on - strandat 4588.514 kb on - strandat 4588.516 kb on + strandat 4588.516 kb on + strandat 4588.516 kb on + strandat 4588.517 kb on - strandat 4588.518 kb on + strandat 4588.519 kb on - strandat 4588.519 kb on - strandat 4588.520 kb on + strandat 4588.520 kb on + strandat 4588.521 kb on - strandat 4588.521 kb on - strandat 4588.548 kb on + strandat 4588.549 kb on - strandat 4588.633 kb on - strand, within CA264_19895at 4588.651 kb on - strand, within CA264_19895at 4588.728 kb on + strand, within CA264_19895at 4588.790 kb on - strand, within CA264_19895at 4588.795 kb on + strand, within CA264_19895at 4588.796 kb on - strand, within CA264_19895

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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4,586,283 - CA264_19875 0.56 -0.9
4,586,294 + CA264_19875 0.59 -0.1
4,586,475 + -1.7
4,586,475 + -0.9
4,586,476 - -0.4
4,586,476 - -0.2
4,586,488 - -0.1
4,586,518 + +0.0
4,587,215 + -1.7
4,587,228 - -0.2
4,587,228 - -0.2
4,587,232 - -0.0
4,587,232 - -0.7
4,587,303 + CA264_19885 0.16 -0.9
4,587,303 + CA264_19885 0.16 +0.6
4,587,311 - CA264_19885 0.17 -0.5
4,587,387 - CA264_19885 0.29 -0.8
4,587,503 + CA264_19885 0.48 -1.4
4,587,543 - CA264_19885 0.54 -0.2
4,587,543 - CA264_19885 0.54 -0.5
4,587,543 - CA264_19885 0.54 -0.2
4,587,545 + CA264_19885 0.55 -0.6
4,587,566 - CA264_19885 0.58 -0.0
4,587,566 - CA264_19885 0.58 -1.1
4,587,566 - CA264_19885 0.58 -1.5
4,587,658 + CA264_19885 0.73 -2.4
4,587,659 - CA264_19885 0.73 -1.1
4,587,706 - CA264_19885 0.81 -0.1
4,587,706 - CA264_19885 0.81 +0.2
4,587,706 - CA264_19885 0.81 -0.6
4,587,761 - CA264_19885 0.89 -1.7
4,587,834 + -0.2
4,587,870 + +1.5
4,587,870 + -0.4
4,587,870 + +0.6
4,587,871 - -0.5
4,587,871 - +0.8
4,587,872 + +1.0
4,587,872 + -0.2
4,587,873 - -0.1
4,587,873 - -0.7
4,587,873 - -0.7
4,587,873 - -0.3
4,587,873 - -0.3
4,587,873 - +0.1
4,587,885 + -0.2
4,587,885 + -0.0
4,587,897 - +0.6
4,588,022 + CA264_19890 0.20 -0.5
4,588,072 - CA264_19890 0.28 -2.2
4,588,073 + CA264_19890 0.28 -1.0
4,588,073 + CA264_19890 0.28 +0.4
4,588,074 - CA264_19890 0.28 -0.3
4,588,074 - CA264_19890 0.28 +1.0
4,588,074 - CA264_19890 0.28 -1.2
4,588,238 - CA264_19890 0.57 +1.0
4,588,238 - CA264_19890 0.57 -2.3
4,588,304 + CA264_19890 0.68 -0.2
4,588,322 - CA264_19890 0.71 +1.4
4,588,378 - CA264_19890 0.81 +0.3
4,588,415 - CA264_19890 0.87 +1.5
4,588,415 - CA264_19890 0.87 +0.5
4,588,511 + +0.7
4,588,511 + -0.7
4,588,511 + -2.9
4,588,511 + -0.7
4,588,511 + +0.8
4,588,511 + +1.1
4,588,511 + +0.8
4,588,512 - +0.0
4,588,512 - -0.1
4,588,512 - -0.3
4,588,512 - -0.5
4,588,512 - -0.7
4,588,512 - -0.1
4,588,512 - +1.4
4,588,512 - -0.9
4,588,513 + -0.3
4,588,513 + -0.8
4,588,514 - +0.1
4,588,514 - +0.6
4,588,514 - -1.0
4,588,514 - +0.1
4,588,516 + -0.1
4,588,516 + +0.0
4,588,516 + +0.2
4,588,517 - -0.4
4,588,518 + +0.2
4,588,519 - -0.7
4,588,519 - +0.2
4,588,520 + +0.6
4,588,520 + -0.1
4,588,521 - +0.2
4,588,521 - -1.1
4,588,548 + +1.0
4,588,549 - -0.4
4,588,633 - CA264_19895 0.17 +0.1
4,588,651 - CA264_19895 0.20 +0.4
4,588,728 + CA264_19895 0.35 -1.0
4,588,790 - CA264_19895 0.47 -0.5
4,588,795 + CA264_19895 0.48 +0.4
4,588,796 - CA264_19895 0.48 -0.2

Or see this region's nucleotide sequence