Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19150

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19145 and CA264_19150 are separated by 22 nucleotidesCA264_19150 and CA264_19155 are separated by 475 nucleotides CA264_19145: CA264_19145 - hypothetical protein, at 4,447,957 to 4,449,057 _19145 CA264_19150: CA264_19150 - TonB dependent receptor, at 4,449,080 to 4,450,996 _19150 CA264_19155: CA264_19155 - DNA-3-methyladenine glycosylase, at 4,451,472 to 4,452,071 _19155 Position (kb) 4449 4450 4451Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4448.080 kb on - strand, within CA264_19145at 4448.080 kb on - strand, within CA264_19145at 4448.080 kb on - strand, within CA264_19145at 4448.080 kb on - strand, within CA264_19145at 4448.081 kb on + strand, within CA264_19145at 4448.112 kb on - strand, within CA264_19145at 4448.171 kb on + strand, within CA264_19145at 4448.186 kb on + strand, within CA264_19145at 4448.190 kb on + strand, within CA264_19145at 4448.192 kb on + strand, within CA264_19145at 4448.192 kb on + strand, within CA264_19145at 4448.195 kb on + strand, within CA264_19145at 4448.195 kb on + strand, within CA264_19145at 4448.196 kb on - strand, within CA264_19145at 4448.261 kb on + strand, within CA264_19145at 4448.262 kb on - strand, within CA264_19145at 4448.332 kb on + strand, within CA264_19145at 4448.333 kb on - strand, within CA264_19145at 4448.494 kb on + strand, within CA264_19145at 4448.502 kb on - strand, within CA264_19145at 4448.502 kb on - strand, within CA264_19145at 4448.515 kb on + strand, within CA264_19145at 4448.516 kb on - strand, within CA264_19145at 4448.570 kb on + strand, within CA264_19145at 4448.631 kb on - strand, within CA264_19145at 4448.668 kb on + strand, within CA264_19145at 4448.705 kb on - strand, within CA264_19145at 4448.751 kb on + strand, within CA264_19145at 4448.752 kb on - strand, within CA264_19145at 4448.772 kb on + strand, within CA264_19145at 4448.790 kb on - strand, within CA264_19145at 4448.802 kb on - strand, within CA264_19145at 4448.858 kb on - strand, within CA264_19145at 4448.869 kb on - strand, within CA264_19145at 4448.890 kb on - strand, within CA264_19145at 4449.069 kb on + strandat 4449.069 kb on + strandat 4449.069 kb on + strandat 4449.070 kb on - strandat 4449.070 kb on - strandat 4449.070 kb on - strandat 4449.074 kb on + strandat 4449.076 kb on + strandat 4449.077 kb on - strandat 4449.077 kb on - strandat 4449.077 kb on - strandat 4449.077 kb on - strandat 4449.077 kb on - strandat 4449.082 kb on - strandat 4449.091 kb on + strandat 4449.110 kb on - strandat 4449.110 kb on - strandat 4449.111 kb on + strandat 4449.111 kb on + strandat 4449.297 kb on + strand, within CA264_19150at 4449.297 kb on + strand, within CA264_19150at 4449.435 kb on + strand, within CA264_19150at 4449.435 kb on + strand, within CA264_19150at 4449.436 kb on - strand, within CA264_19150at 4449.436 kb on - strand, within CA264_19150at 4449.436 kb on - strand, within CA264_19150at 4449.436 kb on - strand, within CA264_19150at 4449.440 kb on - strand, within CA264_19150at 4449.441 kb on + strand, within CA264_19150at 4449.441 kb on + strand, within CA264_19150at 4449.442 kb on - strand, within CA264_19150at 4449.464 kb on + strand, within CA264_19150at 4449.545 kb on + strand, within CA264_19150at 4449.597 kb on + strand, within CA264_19150at 4449.638 kb on + strand, within CA264_19150at 4449.848 kb on + strand, within CA264_19150at 4449.849 kb on - strand, within CA264_19150at 4449.952 kb on - strand, within CA264_19150at 4450.023 kb on + strand, within CA264_19150at 4450.023 kb on + strand, within CA264_19150at 4450.047 kb on + strand, within CA264_19150at 4450.098 kb on + strand, within CA264_19150at 4450.249 kb on - strand, within CA264_19150at 4450.381 kb on + strand, within CA264_19150at 4450.382 kb on - strand, within CA264_19150at 4450.448 kb on + strand, within CA264_19150at 4450.524 kb on + strand, within CA264_19150at 4450.573 kb on - strand, within CA264_19150at 4450.573 kb on - strand, within CA264_19150at 4450.748 kb on + strand, within CA264_19150at 4450.749 kb on + strand, within CA264_19150at 4450.750 kb on - strand, within CA264_19150at 4450.750 kb on - strand, within CA264_19150at 4450.756 kb on + strand, within CA264_19150at 4450.757 kb on - strand, within CA264_19150at 4450.757 kb on - strand, within CA264_19150at 4450.761 kb on + strand, within CA264_19150at 4450.809 kb on + strandat 4450.809 kb on + strandat 4450.832 kb on + strandat 4450.833 kb on - strandat 4450.939 kb on + strandat 4450.999 kb on + strandat 4450.999 kb on + strandat 4450.999 kb on + strandat 4451.000 kb on - strandat 4451.010 kb on + strandat 4451.010 kb on + strandat 4451.010 kb on + strandat 4451.011 kb on - strandat 4451.011 kb on - strandat 4451.011 kb on - strandat 4451.011 kb on - strandat 4451.262 kb on - strandat 4451.270 kb on - strandat 4451.282 kb on - strandat 4451.282 kb on - strandat 4451.331 kb on + strandat 4451.410 kb on + strandat 4451.411 kb on - strandat 4451.464 kb on + strandat 4451.541 kb on + strand, within CA264_19155at 4451.542 kb on - strand, within CA264_19155at 4451.542 kb on - strand, within CA264_19155at 4451.547 kb on + strand, within CA264_19155at 4451.547 kb on + strand, within CA264_19155at 4451.547 kb on + strand, within CA264_19155at 4451.548 kb on - strand, within CA264_19155at 4451.548 kb on - strand, within CA264_19155at 4451.671 kb on - strand, within CA264_19155at 4451.671 kb on - strand, within CA264_19155at 4451.671 kb on - strand, within CA264_19155at 4451.691 kb on + strand, within CA264_19155at 4451.691 kb on + strand, within CA264_19155at 4451.692 kb on - strand, within CA264_19155at 4451.692 kb on - strand, within CA264_19155at 4451.692 kb on - strand, within CA264_19155at 4451.695 kb on + strand, within CA264_19155at 4451.695 kb on + strand, within CA264_19155at 4451.695 kb on + strand, within CA264_19155at 4451.696 kb on - strand, within CA264_19155at 4451.697 kb on + strand, within CA264_19155at 4451.715 kb on + strand, within CA264_19155at 4451.715 kb on + strand, within CA264_19155at 4451.717 kb on - strand, within CA264_19155at 4451.751 kb on - strand, within CA264_19155at 4451.791 kb on + strand, within CA264_19155at 4451.792 kb on - strand, within CA264_19155at 4451.832 kb on - strand, within CA264_19155at 4451.832 kb on - strand, within CA264_19155at 4451.833 kb on + strand, within CA264_19155at 4451.921 kb on + strand, within CA264_19155at 4451.948 kb on - strand, within CA264_19155at 4451.992 kb on + strand, within CA264_19155at 4451.993 kb on - strand, within CA264_19155

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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4,448,080 - CA264_19145 0.11 -1.0
4,448,080 - CA264_19145 0.11 -0.0
4,448,080 - CA264_19145 0.11 +0.9
4,448,080 - CA264_19145 0.11 -0.2
4,448,081 + CA264_19145 0.11 +1.4
4,448,112 - CA264_19145 0.14 -0.7
4,448,171 + CA264_19145 0.19 +1.3
4,448,186 + CA264_19145 0.21 -1.3
4,448,190 + CA264_19145 0.21 -0.0
4,448,192 + CA264_19145 0.21 -0.2
4,448,192 + CA264_19145 0.21 -0.2
4,448,195 + CA264_19145 0.22 +3.0
4,448,195 + CA264_19145 0.22 -1.1
4,448,196 - CA264_19145 0.22 +0.9
4,448,261 + CA264_19145 0.28 -0.4
4,448,262 - CA264_19145 0.28 +0.3
4,448,332 + CA264_19145 0.34 +1.3
4,448,333 - CA264_19145 0.34 -0.1
4,448,494 + CA264_19145 0.49 +0.1
4,448,502 - CA264_19145 0.50 +1.7
4,448,502 - CA264_19145 0.50 +0.7
4,448,515 + CA264_19145 0.51 +1.8
4,448,516 - CA264_19145 0.51 -1.7
4,448,570 + CA264_19145 0.56 +1.1
4,448,631 - CA264_19145 0.61 +0.6
4,448,668 + CA264_19145 0.65 +0.6
4,448,705 - CA264_19145 0.68 -0.1
4,448,751 + CA264_19145 0.72 -1.9
4,448,752 - CA264_19145 0.72 -1.1
4,448,772 + CA264_19145 0.74 +0.3
4,448,790 - CA264_19145 0.76 -1.7
4,448,802 - CA264_19145 0.77 -0.2
4,448,858 - CA264_19145 0.82 -0.5
4,448,869 - CA264_19145 0.83 -0.6
4,448,890 - CA264_19145 0.85 +0.3
4,449,069 + +0.5
4,449,069 + -0.0
4,449,069 + -1.1
4,449,070 - -0.8
4,449,070 - -0.4
4,449,070 - -1.0
4,449,074 + -2.9
4,449,076 + +0.3
4,449,077 - +0.4
4,449,077 - -0.5
4,449,077 - -0.0
4,449,077 - +0.5
4,449,077 - -0.4
4,449,082 - -0.2
4,449,091 + -0.6
4,449,110 - -0.8
4,449,110 - -0.8
4,449,111 + -0.5
4,449,111 + +0.1
4,449,297 + CA264_19150 0.11 -2.1
4,449,297 + CA264_19150 0.11 -1.2
4,449,435 + CA264_19150 0.19 -0.7
4,449,435 + CA264_19150 0.19 +0.4
4,449,436 - CA264_19150 0.19 -1.0
4,449,436 - CA264_19150 0.19 -0.7
4,449,436 - CA264_19150 0.19 -0.3
4,449,436 - CA264_19150 0.19 +0.5
4,449,440 - CA264_19150 0.19 -1.1
4,449,441 + CA264_19150 0.19 +0.9
4,449,441 + CA264_19150 0.19 +1.2
4,449,442 - CA264_19150 0.19 +0.1
4,449,464 + CA264_19150 0.20 -1.7
4,449,545 + CA264_19150 0.24 -0.7
4,449,597 + CA264_19150 0.27 +1.0
4,449,638 + CA264_19150 0.29 -0.9
4,449,848 + CA264_19150 0.40 -0.5
4,449,849 - CA264_19150 0.40 -0.9
4,449,952 - CA264_19150 0.45 +1.0
4,450,023 + CA264_19150 0.49 -0.8
4,450,023 + CA264_19150 0.49 +1.5
4,450,047 + CA264_19150 0.50 +0.4
4,450,098 + CA264_19150 0.53 +1.0
4,450,249 - CA264_19150 0.61 +0.5
4,450,381 + CA264_19150 0.68 -0.2
4,450,382 - CA264_19150 0.68 -0.2
4,450,448 + CA264_19150 0.71 -1.0
4,450,524 + CA264_19150 0.75 -0.4
4,450,573 - CA264_19150 0.78 +1.2
4,450,573 - CA264_19150 0.78 -0.6
4,450,748 + CA264_19150 0.87 +0.4
4,450,749 + CA264_19150 0.87 +0.4
4,450,750 - CA264_19150 0.87 -0.3
4,450,750 - CA264_19150 0.87 -0.6
4,450,756 + CA264_19150 0.87 -0.1
4,450,757 - CA264_19150 0.87 -0.9
4,450,757 - CA264_19150 0.87 -0.0
4,450,761 + CA264_19150 0.88 -0.7
4,450,809 + -0.3
4,450,809 + -0.5
4,450,832 + -0.4
4,450,833 - -1.2
4,450,939 + -0.1
4,450,999 + +0.2
4,450,999 + +0.4
4,450,999 + -0.2
4,451,000 - +1.6
4,451,010 + -1.5
4,451,010 + -0.3
4,451,010 + -0.4
4,451,011 - +0.8
4,451,011 - +0.6
4,451,011 - -2.5
4,451,011 - +0.4
4,451,262 - +0.7
4,451,270 - -0.3
4,451,282 - -0.0
4,451,282 - -0.7
4,451,331 + -0.2
4,451,410 + -0.2
4,451,411 - +0.1
4,451,464 + +0.4
4,451,541 + CA264_19155 0.12 +0.8
4,451,542 - CA264_19155 0.12 -0.3
4,451,542 - CA264_19155 0.12 -0.5
4,451,547 + CA264_19155 0.12 -0.5
4,451,547 + CA264_19155 0.12 +0.3
4,451,547 + CA264_19155 0.12 -0.2
4,451,548 - CA264_19155 0.13 +0.4
4,451,548 - CA264_19155 0.13 -1.1
4,451,671 - CA264_19155 0.33 -0.9
4,451,671 - CA264_19155 0.33 +0.3
4,451,671 - CA264_19155 0.33 -0.3
4,451,691 + CA264_19155 0.36 +0.1
4,451,691 + CA264_19155 0.36 +0.6
4,451,692 - CA264_19155 0.37 -0.7
4,451,692 - CA264_19155 0.37 +0.4
4,451,692 - CA264_19155 0.37 -3.0
4,451,695 + CA264_19155 0.37 -0.0
4,451,695 + CA264_19155 0.37 -0.4
4,451,695 + CA264_19155 0.37 -1.6
4,451,696 - CA264_19155 0.37 -0.4
4,451,697 + CA264_19155 0.38 -0.2
4,451,715 + CA264_19155 0.41 +0.4
4,451,715 + CA264_19155 0.41 -1.4
4,451,717 - CA264_19155 0.41 +0.6
4,451,751 - CA264_19155 0.47 -0.7
4,451,791 + CA264_19155 0.53 -1.4
4,451,792 - CA264_19155 0.53 -1.0
4,451,832 - CA264_19155 0.60 -1.3
4,451,832 - CA264_19155 0.60 -1.0
4,451,833 + CA264_19155 0.60 -0.8
4,451,921 + CA264_19155 0.75 -0.2
4,451,948 - CA264_19155 0.79 -0.5
4,451,992 + CA264_19155 0.87 -1.8
4,451,993 - CA264_19155 0.87 -0.5

Or see this region's nucleotide sequence