Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19090

Experiment: m.b. Vancomycin 0.016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_19085 and CA264_19090 overlap by 17 nucleotidesCA264_19090 and CA264_19095 are separated by 274 nucleotides CA264_19085: CA264_19085 - RNA polymerase subunit sigma-24, at 4,434,682 to 4,435,260 _19085 CA264_19090: CA264_19090 - hypothetical protein, at 4,435,244 to 4,436,938 _19090 CA264_19095: CA264_19095 - hypothetical protein, at 4,437,213 to 4,437,584 _19095 Position (kb) 4435 4436 4437Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4434.290 kb on + strandat 4434.291 kb on - strandat 4434.293 kb on + strandat 4434.407 kb on - strandat 4434.438 kb on - strandat 4434.493 kb on + strandat 4434.605 kb on - strandat 4434.605 kb on - strandat 4434.615 kb on + strandat 4434.651 kb on + strandat 4434.726 kb on - strandat 4434.769 kb on + strand, within CA264_19085at 4434.769 kb on + strand, within CA264_19085at 4434.840 kb on + strand, within CA264_19085at 4434.944 kb on + strand, within CA264_19085at 4435.009 kb on - strand, within CA264_19085at 4435.056 kb on - strand, within CA264_19085at 4435.059 kb on + strand, within CA264_19085at 4435.106 kb on - strand, within CA264_19085at 4435.180 kb on + strand, within CA264_19085at 4435.199 kb on + strand, within CA264_19085at 4435.200 kb on - strand, within CA264_19085at 4435.360 kb on + strandat 4435.361 kb on - strandat 4435.382 kb on + strandat 4435.383 kb on - strandat 4435.403 kb on + strandat 4435.464 kb on - strand, within CA264_19090at 4435.467 kb on - strand, within CA264_19090at 4435.720 kb on + strand, within CA264_19090at 4435.720 kb on + strand, within CA264_19090at 4436.495 kb on - strand, within CA264_19090at 4436.589 kb on - strand, within CA264_19090at 4436.913 kb on - strandat 4437.048 kb on + strandat 4437.061 kb on - strandat 4437.086 kb on + strandat 4437.087 kb on - strandat 4437.118 kb on - strandat 4437.122 kb on + strandat 4437.122 kb on + strandat 4437.122 kb on + strandat 4437.122 kb on + strandat 4437.123 kb on - strandat 4437.123 kb on - strandat 4437.136 kb on + strandat 4437.137 kb on - strandat 4437.160 kb on + strandat 4437.161 kb on - strandat 4437.228 kb on + strandat 4437.345 kb on + strand, within CA264_19095at 4437.346 kb on - strand, within CA264_19095at 4437.424 kb on - strand, within CA264_19095at 4437.438 kb on - strand, within CA264_19095at 4437.475 kb on + strand, within CA264_19095at 4437.493 kb on + strand, within CA264_19095at 4437.493 kb on + strand, within CA264_19095at 4437.582 kb on + strandat 4437.600 kb on + strandat 4437.601 kb on - strandat 4437.608 kb on - strandat 4437.617 kb on - strandat 4437.617 kb on - strandat 4437.635 kb on - strandat 4437.672 kb on + strandat 4437.760 kb on - strandat 4437.770 kb on + strandat 4437.771 kb on - strandat 4437.793 kb on - strandat 4437.815 kb on - strandat 4437.821 kb on - strandat 4437.821 kb on - strandat 4437.837 kb on - strandat 4437.850 kb on + strandat 4437.852 kb on + strandat 4437.856 kb on + strandat 4437.858 kb on + strandat 4437.911 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
remove
4,434,290 + +0.7
4,434,291 - -0.2
4,434,293 + -0.7
4,434,407 - -0.1
4,434,438 - +0.3
4,434,493 + +0.3
4,434,605 - +0.5
4,434,605 - -0.1
4,434,615 + -0.3
4,434,651 + -0.6
4,434,726 - -0.2
4,434,769 + CA264_19085 0.15 -0.1
4,434,769 + CA264_19085 0.15 +0.7
4,434,840 + CA264_19085 0.27 +0.2
4,434,944 + CA264_19085 0.45 -0.4
4,435,009 - CA264_19085 0.56 +1.1
4,435,056 - CA264_19085 0.65 -0.2
4,435,059 + CA264_19085 0.65 +0.1
4,435,106 - CA264_19085 0.73 +1.6
4,435,180 + CA264_19085 0.86 +0.1
4,435,199 + CA264_19085 0.89 +1.5
4,435,200 - CA264_19085 0.89 +0.8
4,435,360 + -0.2
4,435,361 - -0.6
4,435,382 + +0.9
4,435,383 - -0.5
4,435,403 + -0.6
4,435,464 - CA264_19090 0.13 -0.4
4,435,467 - CA264_19090 0.13 -1.7
4,435,720 + CA264_19090 0.28 -0.4
4,435,720 + CA264_19090 0.28 -1.5
4,436,495 - CA264_19090 0.74 -1.8
4,436,589 - CA264_19090 0.79 -0.6
4,436,913 - -2.7
4,437,048 + +2.1
4,437,061 - +1.3
4,437,086 + -0.5
4,437,087 - +0.6
4,437,118 - -0.8
4,437,122 + +2.0
4,437,122 + +1.6
4,437,122 + +1.4
4,437,122 + +1.3
4,437,123 - +1.5
4,437,123 - +0.8
4,437,136 + +1.6
4,437,137 - +0.6
4,437,160 + +0.3
4,437,161 - +0.6
4,437,228 + +0.6
4,437,345 + CA264_19095 0.35 -1.0
4,437,346 - CA264_19095 0.36 +0.3
4,437,424 - CA264_19095 0.57 -0.4
4,437,438 - CA264_19095 0.60 +0.6
4,437,475 + CA264_19095 0.70 +1.3
4,437,493 + CA264_19095 0.75 +0.3
4,437,493 + CA264_19095 0.75 +0.9
4,437,582 + -0.6
4,437,600 + -0.3
4,437,601 - -0.3
4,437,608 - +0.6
4,437,617 - +0.1
4,437,617 - -3.1
4,437,635 - -1.9
4,437,672 + +0.8
4,437,760 - +0.0
4,437,770 + +0.5
4,437,771 - +0.3
4,437,793 - +0.3
4,437,815 - +0.1
4,437,821 - -1.1
4,437,821 - -0.2
4,437,837 - -0.2
4,437,850 + +0.4
4,437,852 + +0.1
4,437,856 + -0.7
4,437,858 + -0.4
4,437,911 - -0.6

Or see this region's nucleotide sequence