Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18515

Experiment: m.b. Vancomycin 0.016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_18505 and CA264_18510 are separated by 196 nucleotidesCA264_18510 and CA264_18515 are separated by 1 nucleotidesCA264_18515 and CA264_18520 are separated by 334 nucleotides CA264_18505: CA264_18505 - ABC transporter ATP-binding protein, at 4,305,398 to 4,306,249 _18505 CA264_18510: CA264_18510 - hypothetical protein, at 4,306,446 to 4,307,192 _18510 CA264_18515: CA264_18515 - GntR family transcriptional regulator, at 4,307,194 to 4,307,565 _18515 CA264_18520: CA264_18520 - hypothetical protein, at 4,307,900 to 4,308,688 _18520 Position (kb) 4307 4308Strain fitness (log2 ratio) -2 -1 0 1 2at 4306.238 kb on + strandat 4306.239 kb on - strandat 4306.244 kb on + strandat 4306.248 kb on - strandat 4306.364 kb on + strandat 4306.365 kb on - strandat 4306.365 kb on - strandat 4306.370 kb on + strandat 4306.371 kb on - strandat 4306.432 kb on + strandat 4306.439 kb on + strandat 4306.445 kb on + strandat 4306.445 kb on + strandat 4306.451 kb on + strandat 4306.484 kb on + strandat 4306.501 kb on - strandat 4306.666 kb on + strand, within CA264_18510at 4306.666 kb on + strand, within CA264_18510at 4306.667 kb on - strand, within CA264_18510at 4306.667 kb on - strand, within CA264_18510at 4306.667 kb on - strand, within CA264_18510at 4306.667 kb on - strand, within CA264_18510at 4306.669 kb on - strand, within CA264_18510at 4306.699 kb on - strand, within CA264_18510at 4306.699 kb on - strand, within CA264_18510at 4306.699 kb on - strand, within CA264_18510at 4306.741 kb on + strand, within CA264_18510at 4306.754 kb on - strand, within CA264_18510at 4306.859 kb on + strand, within CA264_18510at 4306.860 kb on - strand, within CA264_18510at 4306.860 kb on - strand, within CA264_18510at 4306.860 kb on - strand, within CA264_18510at 4306.863 kb on + strand, within CA264_18510at 4306.864 kb on - strand, within CA264_18510at 4306.864 kb on - strand, within CA264_18510at 4306.880 kb on + strand, within CA264_18510at 4306.881 kb on - strand, within CA264_18510at 4306.896 kb on + strand, within CA264_18510at 4306.896 kb on + strand, within CA264_18510at 4306.897 kb on - strand, within CA264_18510at 4306.897 kb on - strand, within CA264_18510at 4306.982 kb on - strand, within CA264_18510at 4307.006 kb on + strand, within CA264_18510at 4307.054 kb on + strand, within CA264_18510at 4307.174 kb on + strandat 4307.190 kb on + strandat 4307.191 kb on - strandat 4307.219 kb on + strandat 4307.220 kb on - strandat 4307.220 kb on - strandat 4307.221 kb on + strandat 4307.222 kb on - strandat 4307.222 kb on - strandat 4307.222 kb on - strandat 4307.226 kb on - strandat 4307.256 kb on - strand, within CA264_18515at 4307.356 kb on + strand, within CA264_18515at 4307.357 kb on - strand, within CA264_18515at 4307.380 kb on + strand, within CA264_18515at 4307.401 kb on + strand, within CA264_18515at 4307.531 kb on - strandat 4307.563 kb on + strandat 4307.592 kb on + strandat 4307.592 kb on + strandat 4307.603 kb on + strandat 4307.607 kb on + strandat 4307.608 kb on - strandat 4307.653 kb on - strandat 4307.677 kb on + strandat 4307.677 kb on + strandat 4307.863 kb on + strandat 4307.894 kb on + strandat 4307.895 kb on - strandat 4307.895 kb on - strandat 4307.899 kb on + strandat 4307.900 kb on - strandat 4307.900 kb on - strandat 4307.900 kb on - strandat 4307.919 kb on + strandat 4307.919 kb on + strandat 4307.919 kb on + strandat 4307.936 kb on - strandat 4307.936 kb on - strandat 4307.971 kb on - strandat 4307.971 kb on - strandat 4307.989 kb on - strand, within CA264_18520at 4307.989 kb on - strand, within CA264_18520at 4308.113 kb on + strand, within CA264_18520at 4308.113 kb on + strand, within CA264_18520at 4308.140 kb on - strand, within CA264_18520at 4308.179 kb on + strand, within CA264_18520at 4308.182 kb on + strand, within CA264_18520at 4308.182 kb on + strand, within CA264_18520at 4308.183 kb on - strand, within CA264_18520at 4308.183 kb on - strand, within CA264_18520at 4308.183 kb on - strand, within CA264_18520at 4308.230 kb on + strand, within CA264_18520at 4308.230 kb on + strand, within CA264_18520at 4308.230 kb on + strand, within CA264_18520at 4308.231 kb on - strand, within CA264_18520at 4308.231 kb on - strand, within CA264_18520at 4308.299 kb on + strand, within CA264_18520at 4308.328 kb on + strand, within CA264_18520at 4308.365 kb on + strand, within CA264_18520at 4308.427 kb on + strand, within CA264_18520at 4308.432 kb on - strand, within CA264_18520at 4308.470 kb on - strand, within CA264_18520at 4308.493 kb on + strand, within CA264_18520at 4308.494 kb on - strand, within CA264_18520at 4308.494 kb on - strand, within CA264_18520at 4308.494 kb on - strand, within CA264_18520at 4308.494 kb on - strand, within CA264_18520at 4308.521 kb on - strand, within CA264_18520at 4308.563 kb on + strand, within CA264_18520at 4308.564 kb on - strand, within CA264_18520

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
remove
4,306,238 + +0.4
4,306,239 - -0.3
4,306,244 + +0.8
4,306,248 - +0.9
4,306,364 + -1.7
4,306,365 - +1.2
4,306,365 - +0.2
4,306,370 + +0.7
4,306,371 - +0.7
4,306,432 + -0.1
4,306,439 + +1.2
4,306,445 + -1.5
4,306,445 + +0.7
4,306,451 + -0.4
4,306,484 + +0.0
4,306,501 - +0.3
4,306,666 + CA264_18510 0.29 -1.9
4,306,666 + CA264_18510 0.29 -0.1
4,306,667 - CA264_18510 0.30 -2.7
4,306,667 - CA264_18510 0.30 -0.2
4,306,667 - CA264_18510 0.30 -0.4
4,306,667 - CA264_18510 0.30 -1.2
4,306,669 - CA264_18510 0.30 -1.1
4,306,699 - CA264_18510 0.34 +0.5
4,306,699 - CA264_18510 0.34 -0.6
4,306,699 - CA264_18510 0.34 -0.5
4,306,741 + CA264_18510 0.39 -0.6
4,306,754 - CA264_18510 0.41 -2.1
4,306,859 + CA264_18510 0.55 -0.0
4,306,860 - CA264_18510 0.55 -0.9
4,306,860 - CA264_18510 0.55 +0.5
4,306,860 - CA264_18510 0.55 +0.7
4,306,863 + CA264_18510 0.56 -0.0
4,306,864 - CA264_18510 0.56 -1.5
4,306,864 - CA264_18510 0.56 -0.6
4,306,880 + CA264_18510 0.58 -0.3
4,306,881 - CA264_18510 0.58 -1.1
4,306,896 + CA264_18510 0.60 -0.1
4,306,896 + CA264_18510 0.60 +0.1
4,306,897 - CA264_18510 0.60 -0.9
4,306,897 - CA264_18510 0.60 +0.2
4,306,982 - CA264_18510 0.72 -0.5
4,307,006 + CA264_18510 0.75 +0.8
4,307,054 + CA264_18510 0.81 +0.3
4,307,174 + -0.6
4,307,190 + -0.0
4,307,191 - +0.2
4,307,219 + +1.9
4,307,220 - -0.5
4,307,220 - +0.3
4,307,221 + +1.6
4,307,222 - +0.7
4,307,222 - +0.4
4,307,222 - -0.4
4,307,226 - +0.1
4,307,256 - CA264_18515 0.17 +0.7
4,307,356 + CA264_18515 0.44 +1.3
4,307,357 - CA264_18515 0.44 -0.1
4,307,380 + CA264_18515 0.50 +0.5
4,307,401 + CA264_18515 0.56 -1.1
4,307,531 - -0.1
4,307,563 + -1.0
4,307,592 + -0.1
4,307,592 + -0.2
4,307,603 + +0.5
4,307,607 + -0.2
4,307,608 - -0.0
4,307,653 - +0.7
4,307,677 + +0.3
4,307,677 + +0.5
4,307,863 + +0.5
4,307,894 + +1.1
4,307,895 - +0.3
4,307,895 - -1.5
4,307,899 + +0.6
4,307,900 - +0.5
4,307,900 - -0.6
4,307,900 - -0.3
4,307,919 + -0.3
4,307,919 + -0.9
4,307,919 + +0.3
4,307,936 - +0.1
4,307,936 - -1.0
4,307,971 - +0.4
4,307,971 - -0.1
4,307,989 - CA264_18520 0.11 -0.1
4,307,989 - CA264_18520 0.11 +0.1
4,308,113 + CA264_18520 0.27 +0.4
4,308,113 + CA264_18520 0.27 +0.1
4,308,140 - CA264_18520 0.30 +1.3
4,308,179 + CA264_18520 0.35 +0.9
4,308,182 + CA264_18520 0.36 +1.0
4,308,182 + CA264_18520 0.36 +0.4
4,308,183 - CA264_18520 0.36 +0.5
4,308,183 - CA264_18520 0.36 -1.5
4,308,183 - CA264_18520 0.36 -0.4
4,308,230 + CA264_18520 0.42 -0.2
4,308,230 + CA264_18520 0.42 -0.2
4,308,230 + CA264_18520 0.42 -0.2
4,308,231 - CA264_18520 0.42 +0.0
4,308,231 - CA264_18520 0.42 -0.3
4,308,299 + CA264_18520 0.51 -2.6
4,308,328 + CA264_18520 0.54 -0.1
4,308,365 + CA264_18520 0.59 -0.1
4,308,427 + CA264_18520 0.67 -0.6
4,308,432 - CA264_18520 0.67 -0.4
4,308,470 - CA264_18520 0.72 +0.4
4,308,493 + CA264_18520 0.75 -0.9
4,308,494 - CA264_18520 0.75 +1.1
4,308,494 - CA264_18520 0.75 -1.6
4,308,494 - CA264_18520 0.75 -1.1
4,308,494 - CA264_18520 0.75 -0.1
4,308,521 - CA264_18520 0.79 -0.2
4,308,563 + CA264_18520 0.84 +0.7
4,308,564 - CA264_18520 0.84 +0.8

Or see this region's nucleotide sequence