Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17825 and CA264_17830 are separated by 121 nucleotides CA264_17830 and CA264_17835 are separated by 129 nucleotides CA264_17835 and CA264_17840 are separated by 113 nucleotides
CA264_17825: CA264_17825 - anhydro-N-acetylmuramic acid kinase, at 4,144,650 to 4,145,723
_17825
CA264_17830: CA264_17830 - transcriptional regulator, at 4,145,845 to 4,146,153
_17830
CA264_17835: CA264_17835 - glutamyl-tRNA reductase, at 4,146,283 to 4,147,566
_17835
CA264_17840: CA264_17840 - ATP-binding protein, at 4,147,680 to 4,148,861
_17840
Position (kb)
4146
4147
4148 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4145.886 kb on + strand, within CA264_17830 at 4145.930 kb on + strand, within CA264_17830 at 4145.983 kb on + strand, within CA264_17830 at 4145.983 kb on + strand, within CA264_17830 at 4145.983 kb on + strand, within CA264_17830 at 4145.983 kb on + strand, within CA264_17830 at 4145.994 kb on - strand, within CA264_17830 at 4146.030 kb on + strand, within CA264_17830 at 4146.081 kb on - strand, within CA264_17830 at 4146.082 kb on + strand, within CA264_17830 at 4146.083 kb on - strand, within CA264_17830 at 4146.083 kb on - strand, within CA264_17830 at 4146.086 kb on - strand, within CA264_17830 at 4146.151 kb on + strand at 4146.168 kb on + strand at 4146.218 kb on + strand at 4147.625 kb on - strand at 4147.636 kb on - strand at 4147.642 kb on - strand at 4147.642 kb on - strand at 4147.651 kb on + strand at 4147.692 kb on + strand at 4147.761 kb on - strand at 4147.761 kb on - strand at 4147.767 kb on - strand at 4147.769 kb on + strand at 4147.769 kb on + strand at 4147.774 kb on + strand at 4147.775 kb on - strand at 4147.775 kb on - strand at 4147.775 kb on - strand at 4147.775 kb on - strand at 4147.789 kb on + strand at 4147.821 kb on + strand, within CA264_17840 at 4147.878 kb on - strand, within CA264_17840 at 4147.943 kb on + strand, within CA264_17840 at 4147.955 kb on + strand, within CA264_17840 at 4147.967 kb on + strand, within CA264_17840 at 4148.315 kb on + strand, within CA264_17840 at 4148.496 kb on - strand, within CA264_17840 at 4148.522 kb on + strand, within CA264_17840 at 4148.523 kb on - strand, within CA264_17840 at 4148.526 kb on - strand, within CA264_17840 at 4148.536 kb on + strand, within CA264_17840
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 4,145,886 + CA264_17830 0.13 -1.2 4,145,930 + CA264_17830 0.28 -0.4 4,145,983 + CA264_17830 0.45 +0.4 4,145,983 + CA264_17830 0.45 -1.5 4,145,983 + CA264_17830 0.45 -2.0 4,145,983 + CA264_17830 0.45 -0.0 4,145,994 - CA264_17830 0.48 -1.6 4,146,030 + CA264_17830 0.60 +0.6 4,146,081 - CA264_17830 0.76 -1.0 4,146,082 + CA264_17830 0.77 -0.0 4,146,083 - CA264_17830 0.77 -1.2 4,146,083 - CA264_17830 0.77 +1.0 4,146,086 - CA264_17830 0.78 -0.6 4,146,151 + +0.0 4,146,168 + -0.6 4,146,218 + +0.1 4,147,625 - -0.6 4,147,636 - -0.2 4,147,642 - -2.0 4,147,642 - -1.6 4,147,651 + -1.2 4,147,692 + -0.1 4,147,761 - +0.1 4,147,761 - -2.3 4,147,767 - +0.4 4,147,769 + +0.1 4,147,769 + -0.6 4,147,774 + -1.7 4,147,775 - -1.0 4,147,775 - -0.4 4,147,775 - -1.0 4,147,775 - -0.7 4,147,789 + -0.4 4,147,821 + CA264_17840 0.12 -1.9 4,147,878 - CA264_17840 0.17 -2.2 4,147,943 + CA264_17840 0.22 -0.9 4,147,955 + CA264_17840 0.23 -1.5 4,147,967 + CA264_17840 0.24 -0.2 4,148,315 + CA264_17840 0.54 -0.4 4,148,496 - CA264_17840 0.69 -0.2 4,148,522 + CA264_17840 0.71 -0.9 4,148,523 - CA264_17840 0.71 +2.1 4,148,526 - CA264_17840 0.72 +0.8 4,148,536 + CA264_17840 0.72 +1.9
Or see this region's nucleotide sequence