Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17290

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17285 and CA264_17290 are separated by 0 nucleotidesCA264_17290 and CA264_17295 are separated by 74 nucleotides CA264_17285: CA264_17285 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 4,019,954 to 4,021,816 _17285 CA264_17290: CA264_17290 - methyltransferase, at 4,021,817 to 4,022,704 _17290 CA264_17295: CA264_17295 - hypothetical protein, at 4,022,779 to 4,024,389 _17295 Position (kb) 4021 4022 4023Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4021.173 kb on + strand, within CA264_17285at 4021.800 kb on + strandat 4021.806 kb on + strandat 4021.806 kb on + strandat 4021.814 kb on + strandat 4021.814 kb on + strandat 4021.823 kb on + strandat 4021.823 kb on + strandat 4021.824 kb on - strandat 4021.884 kb on + strandat 4021.980 kb on + strand, within CA264_17290at 4021.988 kb on + strand, within CA264_17290at 4021.991 kb on + strand, within CA264_17290at 4021.991 kb on + strand, within CA264_17290at 4021.991 kb on + strand, within CA264_17290at 4021.991 kb on + strand, within CA264_17290at 4021.992 kb on - strand, within CA264_17290at 4022.006 kb on + strand, within CA264_17290at 4022.071 kb on + strand, within CA264_17290at 4022.130 kb on + strand, within CA264_17290at 4022.130 kb on + strand, within CA264_17290at 4022.131 kb on - strand, within CA264_17290at 4022.200 kb on - strand, within CA264_17290at 4022.273 kb on - strand, within CA264_17290at 4022.274 kb on + strand, within CA264_17290at 4022.275 kb on - strand, within CA264_17290at 4022.275 kb on - strand, within CA264_17290at 4022.329 kb on + strand, within CA264_17290at 4022.330 kb on - strand, within CA264_17290at 4022.391 kb on + strand, within CA264_17290at 4022.392 kb on - strand, within CA264_17290at 4022.392 kb on - strand, within CA264_17290at 4022.429 kb on + strand, within CA264_17290at 4022.429 kb on + strand, within CA264_17290at 4022.471 kb on + strand, within CA264_17290at 4022.515 kb on + strand, within CA264_17290at 4022.536 kb on - strand, within CA264_17290at 4022.574 kb on + strand, within CA264_17290at 4022.645 kb on + strandat 4022.686 kb on + strandat 4022.702 kb on + strandat 4022.705 kb on + strandat 4022.705 kb on + strandat 4022.733 kb on + strandat 4022.733 kb on + strandat 4022.766 kb on - strandat 4022.787 kb on - strandat 4022.790 kb on - strandat 4022.891 kb on + strandat 4022.929 kb on - strandat 4022.973 kb on + strand, within CA264_17295at 4022.973 kb on + strand, within CA264_17295at 4022.974 kb on - strand, within CA264_17295at 4022.974 kb on - strand, within CA264_17295at 4022.974 kb on - strand, within CA264_17295at 4023.007 kb on - strand, within CA264_17295at 4023.088 kb on + strand, within CA264_17295at 4023.298 kb on + strand, within CA264_17295at 4023.371 kb on - strand, within CA264_17295at 4023.381 kb on - strand, within CA264_17295at 4023.384 kb on + strand, within CA264_17295at 4023.400 kb on + strand, within CA264_17295at 4023.400 kb on + strand, within CA264_17295at 4023.401 kb on - strand, within CA264_17295at 4023.401 kb on - strand, within CA264_17295at 4023.401 kb on - strand, within CA264_17295at 4023.403 kb on + strand, within CA264_17295at 4023.403 kb on + strand, within CA264_17295at 4023.404 kb on - strand, within CA264_17295at 4023.447 kb on + strand, within CA264_17295at 4023.512 kb on + strand, within CA264_17295at 4023.513 kb on - strand, within CA264_17295at 4023.534 kb on + strand, within CA264_17295at 4023.623 kb on + strand, within CA264_17295

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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4,021,173 + CA264_17285 0.65 -0.0
4,021,800 + -0.1
4,021,806 + -0.5
4,021,806 + -1.0
4,021,814 + +0.1
4,021,814 + -0.8
4,021,823 + +0.8
4,021,823 + -0.3
4,021,824 - +2.0
4,021,884 + -0.1
4,021,980 + CA264_17290 0.18 -0.6
4,021,988 + CA264_17290 0.19 -0.8
4,021,991 + CA264_17290 0.20 -1.3
4,021,991 + CA264_17290 0.20 -1.1
4,021,991 + CA264_17290 0.20 -2.4
4,021,991 + CA264_17290 0.20 -0.9
4,021,992 - CA264_17290 0.20 -0.4
4,022,006 + CA264_17290 0.21 -0.1
4,022,071 + CA264_17290 0.29 -1.0
4,022,130 + CA264_17290 0.35 -0.2
4,022,130 + CA264_17290 0.35 -0.5
4,022,131 - CA264_17290 0.35 -0.8
4,022,200 - CA264_17290 0.43 +1.1
4,022,273 - CA264_17290 0.51 -0.5
4,022,274 + CA264_17290 0.51 -1.0
4,022,275 - CA264_17290 0.52 -2.2
4,022,275 - CA264_17290 0.52 -2.2
4,022,329 + CA264_17290 0.58 +1.0
4,022,330 - CA264_17290 0.58 -1.9
4,022,391 + CA264_17290 0.65 -1.2
4,022,392 - CA264_17290 0.65 -0.9
4,022,392 - CA264_17290 0.65 -0.1
4,022,429 + CA264_17290 0.69 -0.6
4,022,429 + CA264_17290 0.69 -0.8
4,022,471 + CA264_17290 0.74 -0.8
4,022,515 + CA264_17290 0.79 +1.2
4,022,536 - CA264_17290 0.81 -1.9
4,022,574 + CA264_17290 0.85 +0.8
4,022,645 + -0.0
4,022,686 + -1.2
4,022,702 + -0.2
4,022,705 + -1.3
4,022,705 + +0.5
4,022,733 + -0.8
4,022,733 + +0.3
4,022,766 - +0.1
4,022,787 - +1.7
4,022,790 - -1.0
4,022,891 + -0.4
4,022,929 - +0.3
4,022,973 + CA264_17295 0.12 -1.7
4,022,973 + CA264_17295 0.12 -0.7
4,022,974 - CA264_17295 0.12 -1.7
4,022,974 - CA264_17295 0.12 -3.9
4,022,974 - CA264_17295 0.12 -2.6
4,023,007 - CA264_17295 0.14 -2.3
4,023,088 + CA264_17295 0.19 -0.8
4,023,298 + CA264_17295 0.32 -2.0
4,023,371 - CA264_17295 0.37 -1.7
4,023,381 - CA264_17295 0.37 -1.7
4,023,384 + CA264_17295 0.38 -1.9
4,023,400 + CA264_17295 0.39 -2.1
4,023,400 + CA264_17295 0.39 -2.7
4,023,401 - CA264_17295 0.39 -2.1
4,023,401 - CA264_17295 0.39 -2.2
4,023,401 - CA264_17295 0.39 -0.0
4,023,403 + CA264_17295 0.39 +0.6
4,023,403 + CA264_17295 0.39 -2.2
4,023,404 - CA264_17295 0.39 -2.6
4,023,447 + CA264_17295 0.41 -2.8
4,023,512 + CA264_17295 0.45 -3.9
4,023,513 - CA264_17295 0.46 -0.6
4,023,534 + CA264_17295 0.47 -0.4
4,023,623 + CA264_17295 0.52 -0.7

Or see this region's nucleotide sequence