Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17130 and CA264_17135 are separated by 270 nucleotides CA264_17135 and CA264_17140 are separated by 24 nucleotides
CA264_17130: CA264_17130 - histidine kinase, at 3,986,505 to 3,989,426
_17130
CA264_17135: CA264_17135 - hypothetical protein, at 3,989,697 to 3,990,179
_17135
CA264_17140: CA264_17140 - hypothetical protein, at 3,990,204 to 3,990,920
_17140
Position (kb)
3989
3990
3991 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3988.738 kb on + strand, within CA264_17130 at 3988.738 kb on + strand, within CA264_17130 at 3988.744 kb on + strand, within CA264_17130 at 3988.744 kb on + strand, within CA264_17130 at 3988.745 kb on - strand, within CA264_17130 at 3988.793 kb on + strand, within CA264_17130 at 3988.794 kb on - strand, within CA264_17130 at 3988.801 kb on + strand, within CA264_17130 at 3988.864 kb on - strand, within CA264_17130 at 3988.940 kb on + strand, within CA264_17130 at 3988.940 kb on + strand, within CA264_17130 at 3988.940 kb on + strand, within CA264_17130 at 3988.940 kb on + strand, within CA264_17130 at 3988.941 kb on - strand, within CA264_17130 at 3988.941 kb on - strand, within CA264_17130 at 3988.941 kb on - strand, within CA264_17130 at 3988.945 kb on + strand, within CA264_17130 at 3989.028 kb on + strand, within CA264_17130 at 3989.035 kb on + strand, within CA264_17130 at 3989.042 kb on + strand, within CA264_17130 at 3989.042 kb on + strand, within CA264_17130 at 3989.132 kb on - strand, within CA264_17130 at 3989.132 kb on - strand, within CA264_17130 at 3989.201 kb on + strand at 3989.237 kb on - strand at 3989.253 kb on - strand at 3989.325 kb on - strand at 3989.389 kb on + strand at 3989.397 kb on + strand at 3989.397 kb on + strand at 3989.397 kb on + strand at 3989.397 kb on + strand at 3989.499 kb on - strand at 3989.499 kb on - strand at 3989.575 kb on + strand at 3989.575 kb on + strand at 3989.593 kb on + strand at 3989.594 kb on - strand at 3989.594 kb on - strand at 3989.598 kb on - strand at 3989.598 kb on - strand at 3989.617 kb on - strand at 3989.751 kb on - strand, within CA264_17135 at 3989.868 kb on + strand, within CA264_17135 at 3989.868 kb on + strand, within CA264_17135 at 3989.968 kb on + strand, within CA264_17135 at 3989.969 kb on - strand, within CA264_17135 at 3989.969 kb on - strand, within CA264_17135 at 3990.063 kb on + strand, within CA264_17135 at 3990.063 kb on + strand, within CA264_17135 at 3990.076 kb on + strand, within CA264_17135 at 3990.076 kb on + strand, within CA264_17135 at 3990.076 kb on + strand, within CA264_17135 at 3990.076 kb on + strand, within CA264_17135 at 3990.077 kb on - strand, within CA264_17135 at 3990.149 kb on + strand at 3990.149 kb on + strand at 3990.174 kb on + strand at 3990.175 kb on - strand at 3990.178 kb on - strand at 3990.198 kb on + strand at 3990.198 kb on + strand at 3990.199 kb on - strand at 3990.199 kb on - strand at 3990.199 kb on - strand at 3990.254 kb on - strand at 3990.337 kb on - strand, within CA264_17140 at 3990.356 kb on - strand, within CA264_17140 at 3990.363 kb on - strand, within CA264_17140 at 3990.365 kb on + strand, within CA264_17140 at 3990.372 kb on + strand, within CA264_17140 at 3990.562 kb on + strand, within CA264_17140 at 3990.562 kb on + strand, within CA264_17140 at 3990.573 kb on + strand, within CA264_17140 at 3990.624 kb on - strand, within CA264_17140 at 3990.630 kb on + strand, within CA264_17140 at 3990.630 kb on + strand, within CA264_17140 at 3990.637 kb on + strand, within CA264_17140 at 3990.638 kb on - strand, within CA264_17140 at 3990.638 kb on - strand, within CA264_17140 at 3990.682 kb on - strand, within CA264_17140 at 3990.700 kb on + strand, within CA264_17140 at 3990.706 kb on + strand, within CA264_17140 at 3990.728 kb on - strand, within CA264_17140 at 3990.728 kb on - strand, within CA264_17140 at 3990.736 kb on + strand, within CA264_17140 at 3990.808 kb on - strand, within CA264_17140 at 3990.808 kb on - strand, within CA264_17140 at 3990.849 kb on + strand at 3990.919 kb on - strand at 3990.945 kb on + strand at 3990.946 kb on - strand at 3990.946 kb on - strand at 3991.072 kb on + strand at 3991.077 kb on + strand at 3991.077 kb on + strand at 3991.078 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 3,988,738 + CA264_17130 0.76 -0.2 3,988,738 + CA264_17130 0.76 -1.0 3,988,744 + CA264_17130 0.77 -1.6 3,988,744 + CA264_17130 0.77 -1.1 3,988,745 - CA264_17130 0.77 -0.5 3,988,793 + CA264_17130 0.78 +1.3 3,988,794 - CA264_17130 0.78 +0.1 3,988,801 + CA264_17130 0.79 -1.4 3,988,864 - CA264_17130 0.81 +0.4 3,988,940 + CA264_17130 0.83 +0.1 3,988,940 + CA264_17130 0.83 +1.0 3,988,940 + CA264_17130 0.83 +0.6 3,988,940 + CA264_17130 0.83 -1.6 3,988,941 - CA264_17130 0.83 -0.1 3,988,941 - CA264_17130 0.83 -0.7 3,988,941 - CA264_17130 0.83 -0.1 3,988,945 + CA264_17130 0.84 +1.3 3,989,028 + CA264_17130 0.86 +0.4 3,989,035 + CA264_17130 0.87 -1.9 3,989,042 + CA264_17130 0.87 -0.3 3,989,042 + CA264_17130 0.87 -0.2 3,989,132 - CA264_17130 0.90 -0.4 3,989,132 - CA264_17130 0.90 +0.1 3,989,201 + +0.8 3,989,237 - +0.3 3,989,253 - -0.5 3,989,325 - +0.1 3,989,389 + +0.1 3,989,397 + -1.3 3,989,397 + -0.5 3,989,397 + +0.1 3,989,397 + +0.1 3,989,499 - -0.2 3,989,499 - +0.2 3,989,575 + -0.1 3,989,575 + -0.4 3,989,593 + -0.8 3,989,594 - -0.4 3,989,594 - -0.4 3,989,598 - +0.4 3,989,598 - -0.3 3,989,617 - -1.0 3,989,751 - CA264_17135 0.11 -0.3 3,989,868 + CA264_17135 0.35 -0.5 3,989,868 + CA264_17135 0.35 +0.4 3,989,968 + CA264_17135 0.56 +0.1 3,989,969 - CA264_17135 0.56 +0.1 3,989,969 - CA264_17135 0.56 -1.9 3,990,063 + CA264_17135 0.76 +0.9 3,990,063 + CA264_17135 0.76 -0.3 3,990,076 + CA264_17135 0.78 +0.8 3,990,076 + CA264_17135 0.78 +0.6 3,990,076 + CA264_17135 0.78 +0.0 3,990,076 + CA264_17135 0.78 -0.4 3,990,077 - CA264_17135 0.79 +2.3 3,990,149 + +0.1 3,990,149 + -0.0 3,990,174 + +0.3 3,990,175 - -0.9 3,990,178 - -1.7 3,990,198 + -0.2 3,990,198 + +0.4 3,990,199 - -0.6 3,990,199 - +0.2 3,990,199 - +0.8 3,990,254 - +0.7 3,990,337 - CA264_17140 0.19 -0.7 3,990,356 - CA264_17140 0.21 -1.1 3,990,363 - CA264_17140 0.22 -0.2 3,990,365 + CA264_17140 0.22 -0.6 3,990,372 + CA264_17140 0.23 -0.0 3,990,562 + CA264_17140 0.50 +0.3 3,990,562 + CA264_17140 0.50 -0.8 3,990,573 + CA264_17140 0.51 -0.4 3,990,624 - CA264_17140 0.59 +1.6 3,990,630 + CA264_17140 0.59 -0.1 3,990,630 + CA264_17140 0.59 -1.5 3,990,637 + CA264_17140 0.60 +0.6 3,990,638 - CA264_17140 0.61 -0.4 3,990,638 - CA264_17140 0.61 -0.2 3,990,682 - CA264_17140 0.67 -0.6 3,990,700 + CA264_17140 0.69 -0.4 3,990,706 + CA264_17140 0.70 +0.0 3,990,728 - CA264_17140 0.73 -1.2 3,990,728 - CA264_17140 0.73 -0.1 3,990,736 + CA264_17140 0.74 +1.2 3,990,808 - CA264_17140 0.84 +0.9 3,990,808 - CA264_17140 0.84 -1.1 3,990,849 + -0.1 3,990,919 - -1.8 3,990,945 + +0.4 3,990,946 - -0.4 3,990,946 - -1.1 3,991,072 + +0.2 3,991,077 + -0.4 3,991,077 + -0.4 3,991,078 - -0.6
Or see this region's nucleotide sequence