Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16920 and CA264_16925 are separated by 9 nucleotides CA264_16925 and CA264_16930 are separated by 174 nucleotides CA264_16930 and CA264_16935 are separated by 110 nucleotides CA264_16935 and CA264_16940 are separated by 135 nucleotides
CA264_16920: CA264_16920 - zinc/iron permease, at 3,940,924 to 3,941,673
_16920
CA264_16925: CA264_16925 - SAM-dependent methyltransferase, at 3,941,683 to 3,942,426
_16925
CA264_16930: CA264_16930 - hypothetical protein, at 3,942,601 to 3,942,906
_16930
CA264_16935: CA264_16935 - hypothetical protein, at 3,943,017 to 3,943,574
_16935
CA264_16940: CA264_16940 - nicotinate-nucleotide diphosphorylase (carboxylating), at 3,943,710 to 3,944,567
_16940
Position (kb)
3942
3943 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3941.659 kb on + strand at 3941.665 kb on + strand at 3941.665 kb on + strand at 3941.701 kb on + strand at 3941.701 kb on + strand at 3941.702 kb on - strand at 3941.744 kb on + strand at 3941.784 kb on + strand, within CA264_16925 at 3941.785 kb on - strand, within CA264_16925 at 3941.785 kb on - strand, within CA264_16925 at 3941.837 kb on + strand, within CA264_16925 at 3941.837 kb on + strand, within CA264_16925 at 3941.838 kb on - strand, within CA264_16925 at 3941.917 kb on + strand, within CA264_16925 at 3942.051 kb on + strand, within CA264_16925 at 3942.066 kb on - strand, within CA264_16925 at 3942.236 kb on + strand, within CA264_16925 at 3942.302 kb on + strand, within CA264_16925 at 3942.302 kb on + strand, within CA264_16925 at 3942.361 kb on + strand at 3942.361 kb on + strand at 3942.362 kb on - strand at 3942.368 kb on + strand at 3942.368 kb on + strand at 3942.371 kb on + strand at 3942.372 kb on - strand at 3942.459 kb on - strand at 3942.468 kb on - strand at 3942.528 kb on - strand at 3942.649 kb on + strand, within CA264_16930 at 3942.701 kb on - strand, within CA264_16930 at 3942.773 kb on + strand, within CA264_16930 at 3942.774 kb on - strand, within CA264_16930 at 3942.774 kb on - strand at 3942.774 kb on - strand, within CA264_16930 at 3942.774 kb on - strand, within CA264_16930 at 3942.801 kb on - strand, within CA264_16930 at 3942.884 kb on - strand at 3942.884 kb on - strand at 3942.890 kb on - strand at 3942.892 kb on + strand at 3942.893 kb on - strand at 3942.975 kb on + strand at 3943.002 kb on + strand at 3943.002 kb on + strand at 3943.012 kb on + strand at 3943.101 kb on + strand, within CA264_16935 at 3943.294 kb on + strand, within CA264_16935 at 3943.443 kb on + strand, within CA264_16935 at 3943.466 kb on - strand, within CA264_16935 at 3943.531 kb on + strand at 3943.532 kb on - strand at 3943.610 kb on - strand at 3943.612 kb on + strand at 3943.681 kb on + strand at 3943.691 kb on + strand at 3943.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 3,941,659 + -0.0 3,941,665 + -1.6 3,941,665 + +1.0 3,941,701 + +0.3 3,941,701 + +1.8 3,941,702 - -0.8 3,941,744 + -0.0 3,941,784 + CA264_16925 0.14 -0.6 3,941,785 - CA264_16925 0.14 +0.3 3,941,785 - CA264_16925 0.14 -0.4 3,941,837 + CA264_16925 0.21 -0.4 3,941,837 + CA264_16925 0.21 +0.1 3,941,838 - CA264_16925 0.21 -1.2 3,941,917 + CA264_16925 0.31 -0.5 3,942,051 + CA264_16925 0.49 +0.2 3,942,066 - CA264_16925 0.51 +0.3 3,942,236 + CA264_16925 0.74 +0.8 3,942,302 + CA264_16925 0.83 +0.6 3,942,302 + CA264_16925 0.83 -0.3 3,942,361 + -0.1 3,942,361 + -0.6 3,942,362 - +0.2 3,942,368 + +0.3 3,942,368 + -0.4 3,942,371 + -0.7 3,942,372 - -0.5 3,942,459 - -0.3 3,942,468 - -0.1 3,942,528 - -0.1 3,942,649 + CA264_16930 0.16 -0.5 3,942,701 - CA264_16930 0.33 +0.8 3,942,773 + CA264_16930 0.56 -0.1 3,942,774 - CA264_16930 0.57 +0.3 3,942,774 - +1.0 3,942,774 - CA264_16930 0.57 +0.5 3,942,774 - CA264_16930 0.57 -1.3 3,942,801 - CA264_16930 0.65 -0.8 3,942,884 - -0.6 3,942,884 - +0.9 3,942,890 - -0.7 3,942,892 + -0.4 3,942,893 - -1.0 3,942,975 + -2.0 3,943,002 + -0.4 3,943,002 + -2.4 3,943,012 + -2.1 3,943,101 + CA264_16935 0.15 -2.5 3,943,294 + CA264_16935 0.50 -2.7 3,943,443 + CA264_16935 0.76 -1.7 3,943,466 - CA264_16935 0.80 -1.0 3,943,531 + -1.4 3,943,532 - -1.0 3,943,610 - -0.1 3,943,612 + -2.1 3,943,681 + -0.7 3,943,691 + -1.3 3,943,692 - -0.5
Or see this region's nucleotide sequence