Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16880 and CA264_16885 are separated by 123 nucleotides CA264_16885 and CA264_16890 are separated by 3 nucleotides CA264_16890 and CA264_16895 are separated by 169 nucleotides CA264_16895 and CA264_16900 are separated by 171 nucleotides
CA264_16880: CA264_16880 - hypothetical protein, at 3,934,967 to 3,935,707
_16880
CA264_16885: CA264_16885 - alpha/beta hydrolase, at 3,935,831 to 3,936,547
_16885
CA264_16890: CA264_16890 - septal ring lytic transglycosylase RlpA family lipoprotein, at 3,936,551 to 3,936,988
_16890
CA264_16895: CA264_16895 - hypothetical protein, at 3,937,158 to 3,937,484
_16895
CA264_16900: CA264_16900 - hypothetical protein, at 3,937,656 to 3,938,309
_16900
Position (kb)
3936
3937 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3935.638 kb on - strand at 3935.683 kb on - strand at 3935.684 kb on + strand at 3935.690 kb on + strand at 3935.691 kb on - strand at 3935.758 kb on + strand at 3935.759 kb on - strand at 3935.791 kb on - strand at 3935.796 kb on + strand at 3935.806 kb on + strand at 3935.828 kb on - strand at 3935.841 kb on + strand at 3936.032 kb on - strand, within CA264_16885 at 3936.052 kb on + strand, within CA264_16885 at 3936.052 kb on + strand, within CA264_16885 at 3936.053 kb on - strand, within CA264_16885 at 3936.053 kb on - strand, within CA264_16885 at 3936.056 kb on - strand, within CA264_16885 at 3936.065 kb on + strand, within CA264_16885 at 3936.262 kb on - strand, within CA264_16885 at 3936.262 kb on - strand, within CA264_16885 at 3936.432 kb on + strand, within CA264_16885 at 3936.432 kb on + strand, within CA264_16885 at 3936.433 kb on - strand, within CA264_16885 at 3936.433 kb on - strand, within CA264_16885 at 3936.438 kb on + strand, within CA264_16885 at 3936.532 kb on + strand at 3936.533 kb on - strand at 3936.533 kb on - strand at 3936.540 kb on + strand at 3936.550 kb on + strand at 3936.551 kb on - strand at 3936.601 kb on - strand, within CA264_16890 at 3936.624 kb on + strand, within CA264_16890 at 3936.625 kb on - strand, within CA264_16890 at 3936.625 kb on - strand, within CA264_16890 at 3936.710 kb on + strand, within CA264_16890 at 3936.810 kb on + strand, within CA264_16890 at 3937.013 kb on - strand at 3937.080 kb on + strand at 3937.089 kb on + strand at 3937.102 kb on + strand at 3937.477 kb on + strand at 3937.489 kb on - strand at 3937.489 kb on - strand at 3937.489 kb on - strand at 3937.634 kb on - strand at 3937.814 kb on - strand, within CA264_16900 at 3937.814 kb on - strand at 3937.869 kb on + strand, within CA264_16900 at 3937.870 kb on - strand, within CA264_16900 at 3937.927 kb on + strand, within CA264_16900 at 3937.928 kb on - strand, within CA264_16900 at 3937.928 kb on - strand, within CA264_16900 at 3937.928 kb on - strand, within CA264_16900
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 3,935,638 - -0.9 3,935,683 - -1.2 3,935,684 + -0.5 3,935,690 + -0.4 3,935,691 - -1.3 3,935,758 + +0.3 3,935,759 - +0.2 3,935,791 - -0.4 3,935,796 + -1.3 3,935,806 + -0.9 3,935,828 - +1.0 3,935,841 + +2.0 3,936,032 - CA264_16885 0.28 +0.9 3,936,052 + CA264_16885 0.31 -1.5 3,936,052 + CA264_16885 0.31 +0.8 3,936,053 - CA264_16885 0.31 +0.6 3,936,053 - CA264_16885 0.31 +0.1 3,936,056 - CA264_16885 0.31 -0.3 3,936,065 + CA264_16885 0.33 +0.0 3,936,262 - CA264_16885 0.60 +2.0 3,936,262 - CA264_16885 0.60 +0.4 3,936,432 + CA264_16885 0.84 +0.1 3,936,432 + CA264_16885 0.84 -1.3 3,936,433 - CA264_16885 0.84 -0.5 3,936,433 - CA264_16885 0.84 +1.5 3,936,438 + CA264_16885 0.85 -1.0 3,936,532 + -2.2 3,936,533 - +0.3 3,936,533 - -0.4 3,936,540 + -0.8 3,936,550 + -0.2 3,936,551 - +0.6 3,936,601 - CA264_16890 0.11 -0.4 3,936,624 + CA264_16890 0.17 -0.1 3,936,625 - CA264_16890 0.17 +0.4 3,936,625 - CA264_16890 0.17 -0.2 3,936,710 + CA264_16890 0.36 -0.1 3,936,810 + CA264_16890 0.59 -0.2 3,937,013 - +1.4 3,937,080 + -0.8 3,937,089 + -0.5 3,937,102 + -0.7 3,937,477 + -0.6 3,937,489 - -0.1 3,937,489 - -0.0 3,937,489 - -0.6 3,937,634 - -0.2 3,937,814 - CA264_16900 0.24 +0.4 3,937,814 - +0.6 3,937,869 + CA264_16900 0.33 -0.2 3,937,870 - CA264_16900 0.33 -1.1 3,937,927 + CA264_16900 0.41 -1.2 3,937,928 - CA264_16900 0.42 -0.2 3,937,928 - CA264_16900 0.42 -0.8 3,937,928 - CA264_16900 0.42 -1.0
Or see this region's nucleotide sequence