Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15595

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15585 and CA264_15590 are separated by 178 nucleotidesCA264_15590 and CA264_15595 are separated by 89 nucleotidesCA264_15595 and CA264_15600 are separated by 221 nucleotides CA264_15585: CA264_15585 - short-chain dehydrogenase, at 3,645,250 to 3,646,050 _15585 CA264_15590: CA264_15590 - metal-dependent hydrolase, at 3,646,229 to 3,646,762 _15590 CA264_15595: CA264_15595 - hypothetical protein, at 3,646,852 to 3,647,805 _15595 CA264_15600: CA264_15600 - tRNA glutamyl-Q synthetase, at 3,648,027 to 3,648,974 _15600 Position (kb) 3646 3647 3648Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3645.875 kb on + strand, within CA264_15585at 3645.877 kb on + strand, within CA264_15585at 3645.878 kb on - strand, within CA264_15585at 3645.878 kb on - strand, within CA264_15585at 3645.882 kb on + strand, within CA264_15585at 3645.883 kb on - strand, within CA264_15585at 3645.883 kb on - strand, within CA264_15585at 3645.884 kb on + strand, within CA264_15585at 3645.884 kb on + strand, within CA264_15585at 3645.885 kb on - strand, within CA264_15585at 3645.943 kb on + strand, within CA264_15585at 3645.943 kb on + strand, within CA264_15585at 3646.026 kb on - strandat 3646.086 kb on + strandat 3646.087 kb on - strandat 3646.087 kb on - strandat 3646.088 kb on + strandat 3646.088 kb on + strandat 3646.089 kb on - strandat 3646.089 kb on - strandat 3646.102 kb on + strandat 3646.139 kb on - strandat 3646.140 kb on + strandat 3646.141 kb on - strandat 3646.144 kb on + strandat 3646.144 kb on + strandat 3646.144 kb on + strandat 3646.144 kb on + strandat 3646.145 kb on - strandat 3646.168 kb on + strandat 3646.184 kb on + strandat 3646.245 kb on - strandat 3646.348 kb on - strand, within CA264_15590at 3646.348 kb on - strand, within CA264_15590at 3646.509 kb on + strand, within CA264_15590at 3646.688 kb on + strand, within CA264_15590at 3646.760 kb on + strandat 3646.760 kb on + strandat 3646.761 kb on - strandat 3646.761 kb on - strandat 3646.765 kb on + strandat 3646.766 kb on - strandat 3646.766 kb on - strandat 3646.766 kb on - strandat 3646.766 kb on - strandat 3646.766 kb on - strandat 3646.817 kb on - strandat 3646.999 kb on - strand, within CA264_15595at 3646.999 kb on - strand, within CA264_15595at 3647.044 kb on - strand, within CA264_15595at 3647.141 kb on + strand, within CA264_15595at 3647.141 kb on + strand, within CA264_15595at 3647.142 kb on - strand, within CA264_15595at 3647.142 kb on - strand, within CA264_15595at 3647.245 kb on - strand, within CA264_15595at 3647.266 kb on + strand, within CA264_15595at 3647.267 kb on - strand, within CA264_15595at 3647.267 kb on - strand, within CA264_15595at 3647.267 kb on - strand, within CA264_15595at 3647.284 kb on - strand, within CA264_15595at 3647.303 kb on + strand, within CA264_15595at 3647.356 kb on + strand, within CA264_15595at 3647.356 kb on + strand, within CA264_15595at 3647.356 kb on + strand, within CA264_15595at 3647.357 kb on - strand, within CA264_15595at 3647.357 kb on - strand, within CA264_15595at 3647.357 kb on - strand, within CA264_15595at 3647.358 kb on + strand, within CA264_15595at 3647.358 kb on + strand, within CA264_15595at 3647.359 kb on - strand, within CA264_15595at 3647.359 kb on - strand, within CA264_15595at 3647.387 kb on + strand, within CA264_15595at 3647.388 kb on - strand, within CA264_15595at 3647.430 kb on + strand, within CA264_15595at 3647.514 kb on + strand, within CA264_15595at 3647.612 kb on + strand, within CA264_15595at 3647.613 kb on - strand, within CA264_15595at 3647.617 kb on + strand, within CA264_15595at 3647.650 kb on - strand, within CA264_15595at 3647.674 kb on + strand, within CA264_15595at 3647.680 kb on + strand, within CA264_15595at 3647.689 kb on - strand, within CA264_15595at 3647.714 kb on + strandat 3647.715 kb on - strandat 3647.735 kb on + strandat 3647.742 kb on + strandat 3647.745 kb on - strandat 3647.760 kb on + strandat 3647.761 kb on - strandat 3647.826 kb on + strandat 3647.849 kb on + strandat 3647.862 kb on + strandat 3647.863 kb on - strandat 3647.948 kb on + strandat 3647.974 kb on - strandat 3647.987 kb on - strandat 3647.998 kb on + strandat 3648.026 kb on + strandat 3648.026 kb on + strandat 3648.027 kb on - strandat 3648.027 kb on - strandat 3648.156 kb on - strand, within CA264_15600at 3648.158 kb on - strand, within CA264_15600at 3648.158 kb on - strand, within CA264_15600at 3648.288 kb on + strand, within CA264_15600at 3648.315 kb on + strand, within CA264_15600at 3648.357 kb on + strand, within CA264_15600at 3648.357 kb on + strand, within CA264_15600at 3648.497 kb on + strand, within CA264_15600at 3648.498 kb on - strand, within CA264_15600at 3648.583 kb on + strand, within CA264_15600at 3648.591 kb on + strand, within CA264_15600at 3648.777 kb on - strand, within CA264_15600at 3648.799 kb on + strand, within CA264_15600

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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3,645,875 + CA264_15585 0.78 -0.2
3,645,877 + CA264_15585 0.78 +0.9
3,645,878 - CA264_15585 0.78 -0.5
3,645,878 - CA264_15585 0.78 +0.1
3,645,882 + CA264_15585 0.79 +1.0
3,645,883 - CA264_15585 0.79 -0.5
3,645,883 - CA264_15585 0.79 +0.4
3,645,884 + CA264_15585 0.79 -1.3
3,645,884 + CA264_15585 0.79 -0.2
3,645,885 - CA264_15585 0.79 -0.3
3,645,943 + CA264_15585 0.87 -0.1
3,645,943 + CA264_15585 0.87 +0.3
3,646,026 - -0.3
3,646,086 + +0.2
3,646,087 - -0.4
3,646,087 - +0.8
3,646,088 + -0.9
3,646,088 + +1.9
3,646,089 - +1.6
3,646,089 - -0.1
3,646,102 + -0.3
3,646,139 - +0.1
3,646,140 + -0.4
3,646,141 - +0.2
3,646,144 + -1.0
3,646,144 + -0.7
3,646,144 + -0.4
3,646,144 + -0.8
3,646,145 - -0.2
3,646,168 + -0.6
3,646,184 + -0.7
3,646,245 - -0.2
3,646,348 - CA264_15590 0.22 +0.3
3,646,348 - CA264_15590 0.22 +0.9
3,646,509 + CA264_15590 0.52 +0.5
3,646,688 + CA264_15590 0.86 -0.2
3,646,760 + +0.5
3,646,760 + +0.7
3,646,761 - +0.2
3,646,761 - +1.1
3,646,765 + +1.6
3,646,766 - +0.6
3,646,766 - +0.4
3,646,766 - -0.2
3,646,766 - -0.4
3,646,766 - -0.2
3,646,817 - +0.8
3,646,999 - CA264_15595 0.15 +1.4
3,646,999 - CA264_15595 0.15 +3.0
3,647,044 - CA264_15595 0.20 +2.0
3,647,141 + CA264_15595 0.30 +1.9
3,647,141 + CA264_15595 0.30 +2.1
3,647,142 - CA264_15595 0.30 +2.3
3,647,142 - CA264_15595 0.30 +2.0
3,647,245 - CA264_15595 0.41 +1.1
3,647,266 + CA264_15595 0.43 +2.0
3,647,267 - CA264_15595 0.44 +2.8
3,647,267 - CA264_15595 0.44 +2.4
3,647,267 - CA264_15595 0.44 +1.6
3,647,284 - CA264_15595 0.45 +2.5
3,647,303 + CA264_15595 0.47 +2.1
3,647,356 + CA264_15595 0.53 +1.2
3,647,356 + CA264_15595 0.53 +2.0
3,647,356 + CA264_15595 0.53 +2.4
3,647,357 - CA264_15595 0.53 +2.4
3,647,357 - CA264_15595 0.53 +2.0
3,647,357 - CA264_15595 0.53 +2.2
3,647,358 + CA264_15595 0.53 +1.6
3,647,358 + CA264_15595 0.53 +1.8
3,647,359 - CA264_15595 0.53 +2.4
3,647,359 - CA264_15595 0.53 +2.2
3,647,387 + CA264_15595 0.56 +2.0
3,647,388 - CA264_15595 0.56 +2.1
3,647,430 + CA264_15595 0.61 +3.0
3,647,514 + CA264_15595 0.69 +1.6
3,647,612 + CA264_15595 0.80 +2.8
3,647,613 - CA264_15595 0.80 +2.0
3,647,617 + CA264_15595 0.80 +1.9
3,647,650 - CA264_15595 0.84 +1.6
3,647,674 + CA264_15595 0.86 +0.5
3,647,680 + CA264_15595 0.87 +1.5
3,647,689 - CA264_15595 0.88 +1.7
3,647,714 + +1.1
3,647,715 - +1.6
3,647,735 + +3.3
3,647,742 + +2.2
3,647,745 - +2.1
3,647,760 + +2.0
3,647,761 - +1.9
3,647,826 + -0.5
3,647,849 + -0.5
3,647,862 + -1.5
3,647,863 - -1.8
3,647,948 + -1.5
3,647,974 - -2.1
3,647,987 - -1.8
3,647,998 + -1.3
3,648,026 + +0.1
3,648,026 + -0.8
3,648,027 - +0.1
3,648,027 - -0.5
3,648,156 - CA264_15600 0.14 -1.0
3,648,158 - CA264_15600 0.14 -0.2
3,648,158 - CA264_15600 0.14 -1.3
3,648,288 + CA264_15600 0.28 +0.6
3,648,315 + CA264_15600 0.30 -0.4
3,648,357 + CA264_15600 0.35 +0.6
3,648,357 + CA264_15600 0.35 -1.0
3,648,497 + CA264_15600 0.50 -0.3
3,648,498 - CA264_15600 0.50 -1.0
3,648,583 + CA264_15600 0.59 +1.6
3,648,591 + CA264_15600 0.59 -0.2
3,648,777 - CA264_15600 0.79 +0.3
3,648,799 + CA264_15600 0.81 -1.2

Or see this region's nucleotide sequence