Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15580

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15570 and CA264_15575 are separated by 292 nucleotidesCA264_15575 and CA264_15580 are separated by 110 nucleotidesCA264_15580 and CA264_15585 are separated by 80 nucleotides CA264_15570: CA264_15570 - hypothetical protein, at 3,642,431 to 3,643,879 _15570 CA264_15575: CA264_15575 - hypothetical protein, at 3,644,172 to 3,644,435 _15575 CA264_15580: CA264_15580 - phospholipase, at 3,644,546 to 3,645,169 _15580 CA264_15585: CA264_15585 - short-chain dehydrogenase, at 3,645,250 to 3,646,050 _15585 Position (kb) 3644 3645 3646Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3643.647 kb on - strand, within CA264_15570at 3643.701 kb on + strand, within CA264_15570at 3643.701 kb on + strand, within CA264_15570at 3643.702 kb on - strand, within CA264_15570at 3643.791 kb on + strandat 3643.792 kb on - strandat 3643.792 kb on - strandat 3643.793 kb on + strandat 3643.793 kb on + strandat 3643.797 kb on + strandat 3643.797 kb on + strandat 3643.797 kb on + strandat 3643.838 kb on - strandat 3643.974 kb on + strandat 3643.975 kb on - strandat 3644.082 kb on + strandat 3644.093 kb on - strandat 3644.124 kb on + strandat 3644.124 kb on + strandat 3644.125 kb on - strandat 3644.142 kb on + strandat 3644.142 kb on + strandat 3644.143 kb on - strandat 3644.144 kb on + strandat 3644.144 kb on + strandat 3644.144 kb on + strandat 3644.144 kb on + strandat 3644.144 kb on + strandat 3644.144 kb on + strandat 3644.145 kb on - strandat 3644.145 kb on - strandat 3644.145 kb on - strandat 3644.145 kb on - strandat 3644.145 kb on - strandat 3644.149 kb on + strandat 3644.149 kb on + strandat 3644.149 kb on + strandat 3644.150 kb on - strandat 3644.150 kb on - strandat 3644.150 kb on - strandat 3644.163 kb on + strandat 3644.164 kb on - strandat 3644.164 kb on - strandat 3644.167 kb on + strandat 3644.167 kb on + strandat 3644.167 kb on + strandat 3644.168 kb on - strandat 3644.168 kb on - strandat 3644.168 kb on - strandat 3644.171 kb on + strandat 3644.171 kb on + strandat 3644.172 kb on - strandat 3644.172 kb on - strandat 3644.188 kb on + strandat 3644.201 kb on - strand, within CA264_15575at 3644.236 kb on + strand, within CA264_15575at 3644.283 kb on + strand, within CA264_15575at 3644.300 kb on - strand, within CA264_15575at 3644.306 kb on + strand, within CA264_15575at 3644.306 kb on + strand, within CA264_15575at 3644.322 kb on - strand, within CA264_15575at 3644.322 kb on - strand, within CA264_15575at 3644.332 kb on + strand, within CA264_15575at 3644.444 kb on + strandat 3644.502 kb on + strandat 3644.555 kb on + strandat 3644.571 kb on - strandat 3644.571 kb on - strandat 3644.687 kb on - strand, within CA264_15580at 3644.687 kb on - strand, within CA264_15580at 3644.687 kb on - strand, within CA264_15580at 3644.691 kb on - strand, within CA264_15580at 3644.691 kb on - strand, within CA264_15580at 3644.805 kb on + strand, within CA264_15580at 3644.842 kb on - strand, within CA264_15580at 3644.905 kb on - strand, within CA264_15580at 3644.931 kb on + strand, within CA264_15580at 3644.997 kb on + strand, within CA264_15580at 3644.997 kb on + strand, within CA264_15580at 3644.997 kb on + strand, within CA264_15580at 3645.061 kb on - strand, within CA264_15580at 3645.066 kb on + strand, within CA264_15580at 3645.067 kb on - strand, within CA264_15580at 3645.105 kb on - strand, within CA264_15580at 3645.122 kb on + strandat 3645.122 kb on + strandat 3645.122 kb on + strandat 3645.123 kb on - strandat 3645.132 kb on + strandat 3645.238 kb on - strandat 3645.307 kb on + strandat 3645.359 kb on - strand, within CA264_15585at 3645.561 kb on - strand, within CA264_15585at 3645.561 kb on - strand, within CA264_15585at 3645.590 kb on + strand, within CA264_15585at 3645.591 kb on - strand, within CA264_15585at 3645.591 kb on - strand, within CA264_15585at 3645.875 kb on + strand, within CA264_15585at 3645.877 kb on + strand, within CA264_15585at 3645.878 kb on - strand, within CA264_15585at 3645.878 kb on - strand, within CA264_15585at 3645.882 kb on + strand, within CA264_15585at 3645.883 kb on - strand, within CA264_15585at 3645.883 kb on - strand, within CA264_15585at 3645.884 kb on + strand, within CA264_15585at 3645.884 kb on + strand, within CA264_15585at 3645.885 kb on - strand, within CA264_15585at 3645.943 kb on + strand, within CA264_15585at 3645.943 kb on + strand, within CA264_15585at 3646.026 kb on - strandat 3646.086 kb on + strandat 3646.087 kb on - strandat 3646.087 kb on - strandat 3646.088 kb on + strandat 3646.088 kb on + strandat 3646.089 kb on - strandat 3646.089 kb on - strandat 3646.102 kb on + strandat 3646.139 kb on - strandat 3646.140 kb on + strandat 3646.141 kb on - strandat 3646.144 kb on + strandat 3646.144 kb on + strandat 3646.144 kb on + strandat 3646.144 kb on + strandat 3646.145 kb on - strandat 3646.168 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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3,643,647 - CA264_15570 0.84 +1.3
3,643,701 + CA264_15570 0.88 +0.1
3,643,701 + CA264_15570 0.88 +0.2
3,643,702 - CA264_15570 0.88 +0.8
3,643,791 + +0.7
3,643,792 - -0.2
3,643,792 - -0.3
3,643,793 + -0.4
3,643,793 + +0.6
3,643,797 + -0.8
3,643,797 + -0.4
3,643,797 + +0.0
3,643,838 - -0.9
3,643,974 + -0.1
3,643,975 - -0.5
3,644,082 + -0.0
3,644,093 - +0.5
3,644,124 + +0.1
3,644,124 + -0.6
3,644,125 - +0.2
3,644,142 + -0.2
3,644,142 + -1.2
3,644,143 - -2.6
3,644,144 + +0.1
3,644,144 + -0.3
3,644,144 + -2.0
3,644,144 + +0.0
3,644,144 + -0.7
3,644,144 + -0.6
3,644,145 - -1.0
3,644,145 - -0.5
3,644,145 - -0.2
3,644,145 - -0.1
3,644,145 - -1.1
3,644,149 + -0.7
3,644,149 + -0.6
3,644,149 + +0.3
3,644,150 - +0.2
3,644,150 - -0.8
3,644,150 - +0.2
3,644,163 + -0.3
3,644,164 - -0.3
3,644,164 - -1.8
3,644,167 + +1.2
3,644,167 + +4.6
3,644,167 + -0.0
3,644,168 - -0.7
3,644,168 - +1.1
3,644,168 - +1.5
3,644,171 + +0.3
3,644,171 + -0.7
3,644,172 - -0.1
3,644,172 - +0.5
3,644,188 + +0.9
3,644,201 - CA264_15575 0.11 +0.1
3,644,236 + CA264_15575 0.24 -1.3
3,644,283 + CA264_15575 0.42 +0.3
3,644,300 - CA264_15575 0.48 -0.1
3,644,306 + CA264_15575 0.51 +1.1
3,644,306 + CA264_15575 0.51 -0.2
3,644,322 - CA264_15575 0.57 -1.8
3,644,322 - CA264_15575 0.57 +0.2
3,644,332 + CA264_15575 0.61 +0.3
3,644,444 + +0.1
3,644,502 + +0.4
3,644,555 + -2.9
3,644,571 - -1.8
3,644,571 - +0.3
3,644,687 - CA264_15580 0.23 +2.1
3,644,687 - CA264_15580 0.23 +0.5
3,644,687 - CA264_15580 0.23 +1.8
3,644,691 - CA264_15580 0.23 -1.1
3,644,691 - CA264_15580 0.23 +0.1
3,644,805 + CA264_15580 0.42 +0.3
3,644,842 - CA264_15580 0.47 -0.1
3,644,905 - CA264_15580 0.58 +0.6
3,644,931 + CA264_15580 0.62 -0.2
3,644,997 + CA264_15580 0.72 +1.0
3,644,997 + CA264_15580 0.72 -1.7
3,644,997 + CA264_15580 0.72 -1.6
3,645,061 - CA264_15580 0.83 -0.2
3,645,066 + CA264_15580 0.83 +0.2
3,645,067 - CA264_15580 0.83 +1.1
3,645,105 - CA264_15580 0.90 -0.3
3,645,122 + -0.2
3,645,122 + +0.8
3,645,122 + +0.6
3,645,123 - -1.1
3,645,132 + -0.6
3,645,238 - +0.5
3,645,307 + -0.6
3,645,359 - CA264_15585 0.14 +1.2
3,645,561 - CA264_15585 0.39 +0.3
3,645,561 - CA264_15585 0.39 -1.0
3,645,590 + CA264_15585 0.42 -0.2
3,645,591 - CA264_15585 0.43 +0.3
3,645,591 - CA264_15585 0.43 -0.1
3,645,875 + CA264_15585 0.78 -0.2
3,645,877 + CA264_15585 0.78 +0.9
3,645,878 - CA264_15585 0.78 -0.5
3,645,878 - CA264_15585 0.78 +0.1
3,645,882 + CA264_15585 0.79 +1.0
3,645,883 - CA264_15585 0.79 -0.5
3,645,883 - CA264_15585 0.79 +0.4
3,645,884 + CA264_15585 0.79 -1.3
3,645,884 + CA264_15585 0.79 -0.2
3,645,885 - CA264_15585 0.79 -0.3
3,645,943 + CA264_15585 0.87 -0.1
3,645,943 + CA264_15585 0.87 +0.3
3,646,026 - -0.3
3,646,086 + +0.2
3,646,087 - -0.4
3,646,087 - +0.8
3,646,088 + -0.9
3,646,088 + +1.9
3,646,089 - +1.6
3,646,089 - -0.1
3,646,102 + -0.3
3,646,139 - +0.1
3,646,140 + -0.4
3,646,141 - +0.2
3,646,144 + -1.0
3,646,144 + -0.7
3,646,144 + -0.4
3,646,144 + -0.8
3,646,145 - -0.2
3,646,168 + -0.6

Or see this region's nucleotide sequence