Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15035 and CA264_15040 are separated by 59 nucleotides CA264_15040 and CA264_15045 are separated by 37 nucleotides
CA264_15035: CA264_15035 - acyl-CoA dehydrogenase, at 3,529,176 to 3,530,966
_15035
CA264_15040: CA264_15040 - four helix bundle protein, at 3,531,026 to 3,531,385
_15040
CA264_15045: CA264_15045 - acetyl-CoA acetyltransferase, at 3,531,423 to 3,532,601
_15045
Position (kb)
3531
3532 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3530.048 kb on - strand, within CA264_15035 at 3530.051 kb on + strand, within CA264_15035 at 3530.081 kb on + strand, within CA264_15035 at 3530.104 kb on + strand, within CA264_15035 at 3530.105 kb on - strand, within CA264_15035 at 3530.147 kb on + strand, within CA264_15035 at 3530.148 kb on - strand, within CA264_15035 at 3530.166 kb on - strand, within CA264_15035 at 3530.343 kb on - strand, within CA264_15035 at 3530.352 kb on - strand, within CA264_15035 at 3530.367 kb on + strand, within CA264_15035 at 3530.440 kb on + strand, within CA264_15035 at 3530.440 kb on + strand, within CA264_15035 at 3530.441 kb on - strand, within CA264_15035 at 3530.441 kb on - strand, within CA264_15035 at 3530.522 kb on - strand, within CA264_15035 at 3530.560 kb on + strand, within CA264_15035 at 3530.606 kb on + strand, within CA264_15035 at 3530.607 kb on - strand, within CA264_15035 at 3530.619 kb on - strand, within CA264_15035 at 3530.687 kb on + strand, within CA264_15035 at 3530.710 kb on + strand, within CA264_15035 at 3530.840 kb on + strand at 3530.886 kb on + strand at 3530.887 kb on - strand at 3530.892 kb on + strand at 3530.893 kb on - strand at 3530.970 kb on + strand at 3530.970 kb on + strand at 3530.980 kb on + strand at 3530.988 kb on - strand at 3531.000 kb on + strand at 3531.001 kb on - strand at 3531.028 kb on - strand at 3531.028 kb on - strand at 3531.028 kb on - strand at 3531.037 kb on + strand at 3531.037 kb on + strand at 3531.095 kb on + strand, within CA264_15040 at 3531.095 kb on + strand, within CA264_15040 at 3531.105 kb on - strand, within CA264_15040 at 3531.269 kb on + strand, within CA264_15040 at 3531.281 kb on - strand, within CA264_15040 at 3531.281 kb on - strand, within CA264_15040 at 3531.324 kb on + strand, within CA264_15040 at 3531.324 kb on + strand, within CA264_15040 at 3531.324 kb on + strand, within CA264_15040 at 3531.324 kb on + strand, within CA264_15040 at 3531.324 kb on + strand, within CA264_15040 at 3531.326 kb on + strand, within CA264_15040 at 3531.327 kb on - strand, within CA264_15040 at 3531.338 kb on + strand, within CA264_15040 at 3531.405 kb on - strand at 3531.480 kb on + strand at 3531.481 kb on - strand at 3531.778 kb on - strand, within CA264_15045 at 3531.882 kb on + strand, within CA264_15045 at 3531.888 kb on - strand, within CA264_15045 at 3531.888 kb on - strand, within CA264_15045 at 3531.969 kb on + strand, within CA264_15045 at 3531.970 kb on - strand, within CA264_15045 at 3531.974 kb on - strand, within CA264_15045 at 3531.974 kb on - strand, within CA264_15045 at 3531.974 kb on - strand, within CA264_15045 at 3532.140 kb on + strand, within CA264_15045 at 3532.202 kb on - strand, within CA264_15045 at 3532.253 kb on + strand, within CA264_15045
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 3,530,048 - CA264_15035 0.49 +1.3 3,530,051 + CA264_15035 0.49 +0.3 3,530,081 + CA264_15035 0.51 +2.3 3,530,104 + CA264_15035 0.52 +0.9 3,530,105 - CA264_15035 0.52 +1.0 3,530,147 + CA264_15035 0.54 +2.0 3,530,148 - CA264_15035 0.54 +0.9 3,530,166 - CA264_15035 0.55 +1.5 3,530,343 - CA264_15035 0.65 +2.3 3,530,352 - CA264_15035 0.66 +1.2 3,530,367 + CA264_15035 0.66 +0.6 3,530,440 + CA264_15035 0.71 +0.9 3,530,440 + CA264_15035 0.71 +2.2 3,530,441 - CA264_15035 0.71 +1.8 3,530,441 - CA264_15035 0.71 +1.1 3,530,522 - CA264_15035 0.75 +1.9 3,530,560 + CA264_15035 0.77 -1.5 3,530,606 + CA264_15035 0.80 +0.2 3,530,607 - CA264_15035 0.80 +0.9 3,530,619 - CA264_15035 0.81 +2.3 3,530,687 + CA264_15035 0.84 +0.3 3,530,710 + CA264_15035 0.86 +0.8 3,530,840 + +1.0 3,530,886 + +1.0 3,530,887 - +1.5 3,530,892 + +0.8 3,530,893 - +1.3 3,530,970 + +0.2 3,530,970 + +0.3 3,530,980 + -0.0 3,530,988 - +1.1 3,531,000 + +0.2 3,531,001 - +2.0 3,531,028 - +1.0 3,531,028 - +1.0 3,531,028 - +0.3 3,531,037 + +0.7 3,531,037 + +0.2 3,531,095 + CA264_15040 0.19 +0.4 3,531,095 + CA264_15040 0.19 +0.3 3,531,105 - CA264_15040 0.22 +2.2 3,531,269 + CA264_15040 0.68 +1.6 3,531,281 - CA264_15040 0.71 +1.4 3,531,281 - CA264_15040 0.71 +2.3 3,531,324 + CA264_15040 0.83 +1.0 3,531,324 + CA264_15040 0.83 +1.2 3,531,324 + CA264_15040 0.83 -0.2 3,531,324 + CA264_15040 0.83 +0.0 3,531,324 + CA264_15040 0.83 +0.9 3,531,326 + CA264_15040 0.83 +0.7 3,531,327 - CA264_15040 0.84 +2.1 3,531,338 + CA264_15040 0.87 +1.6 3,531,405 - +2.0 3,531,480 + +2.3 3,531,481 - +3.7 3,531,778 - CA264_15045 0.30 +3.1 3,531,882 + CA264_15045 0.39 +0.7 3,531,888 - CA264_15045 0.39 +3.1 3,531,888 - CA264_15045 0.39 +3.7 3,531,969 + CA264_15045 0.46 +3.9 3,531,970 - CA264_15045 0.46 +2.2 3,531,974 - CA264_15045 0.47 +4.0 3,531,974 - CA264_15045 0.47 +3.7 3,531,974 - CA264_15045 0.47 +3.8 3,532,140 + CA264_15045 0.61 +3.1 3,532,202 - CA264_15045 0.66 +3.5 3,532,253 + CA264_15045 0.70 +3.8
Or see this region's nucleotide sequence