Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14975

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14970 and CA264_14975 are separated by 69 nucleotidesCA264_14975 and CA264_14980 are separated by 73 nucleotides CA264_14970: CA264_14970 - gliding motility lipoprotein GldB, at 3,513,609 to 3,514,613 _14970 CA264_14975: CA264_14975 - hypothetical protein, at 3,514,683 to 3,515,360 _14975 CA264_14980: CA264_14980 - ribonuclease E/G, at 3,515,434 to 3,517,032 _14980 Position (kb) 3514 3515 3516Strain fitness (log2 ratio) -2 -1 0 1 2at 3513.834 kb on + strand, within CA264_14970at 3513.849 kb on + strand, within CA264_14970at 3513.879 kb on - strand, within CA264_14970at 3513.917 kb on + strand, within CA264_14970at 3513.917 kb on + strand, within CA264_14970at 3513.917 kb on + strand, within CA264_14970at 3513.917 kb on + strand, within CA264_14970at 3513.918 kb on - strand, within CA264_14970at 3513.918 kb on - strand, within CA264_14970at 3513.922 kb on + strand, within CA264_14970at 3513.923 kb on - strand, within CA264_14970at 3513.962 kb on - strand, within CA264_14970at 3513.962 kb on - strand, within CA264_14970at 3513.964 kb on + strand, within CA264_14970at 3513.975 kb on + strand, within CA264_14970at 3514.094 kb on - strand, within CA264_14970at 3514.099 kb on + strand, within CA264_14970at 3514.115 kb on - strand, within CA264_14970at 3514.118 kb on + strand, within CA264_14970at 3514.118 kb on + strand, within CA264_14970at 3514.247 kb on - strand, within CA264_14970at 3514.254 kb on + strand, within CA264_14970at 3514.254 kb on + strand, within CA264_14970at 3514.255 kb on - strand, within CA264_14970at 3514.397 kb on - strand, within CA264_14970at 3514.397 kb on - strand, within CA264_14970at 3514.397 kb on - strand, within CA264_14970at 3514.397 kb on - strand, within CA264_14970at 3514.401 kb on - strand, within CA264_14970at 3514.401 kb on - strand, within CA264_14970at 3514.594 kb on - strandat 3514.595 kb on + strandat 3514.599 kb on + strandat 3514.630 kb on - strandat 3514.656 kb on - strandat 3514.656 kb on - strandat 3514.656 kb on - strandat 3514.656 kb on - strandat 3514.665 kb on + strandat 3514.665 kb on + strandat 3514.666 kb on - strandat 3514.666 kb on - strandat 3514.666 kb on - strandat 3514.672 kb on + strandat 3514.750 kb on + strandat 3514.750 kb on + strandat 3514.751 kb on - strand, within CA264_14975at 3514.812 kb on + strand, within CA264_14975at 3514.812 kb on + strand, within CA264_14975at 3514.887 kb on + strand, within CA264_14975at 3514.888 kb on - strand, within CA264_14975at 3514.938 kb on + strand, within CA264_14975at 3514.945 kb on - strand, within CA264_14975at 3514.945 kb on - strand, within CA264_14975at 3514.945 kb on - strand, within CA264_14975at 3515.006 kb on - strand, within CA264_14975at 3515.010 kb on + strand, within CA264_14975at 3515.010 kb on + strand, within CA264_14975at 3515.011 kb on - strand, within CA264_14975at 3515.170 kb on + strand, within CA264_14975at 3515.251 kb on - strand, within CA264_14975at 3515.436 kb on - strandat 3515.642 kb on - strand, within CA264_14980

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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3,513,834 + CA264_14970 0.22 +0.4
3,513,849 + CA264_14970 0.24 -0.4
3,513,879 - CA264_14970 0.27 -0.1
3,513,917 + CA264_14970 0.31 -0.4
3,513,917 + CA264_14970 0.31 +2.1
3,513,917 + CA264_14970 0.31 +0.5
3,513,917 + CA264_14970 0.31 -0.4
3,513,918 - CA264_14970 0.31 +0.7
3,513,918 - CA264_14970 0.31 +0.2
3,513,922 + CA264_14970 0.31 -0.0
3,513,923 - CA264_14970 0.31 +0.7
3,513,962 - CA264_14970 0.35 +1.3
3,513,962 - CA264_14970 0.35 +1.0
3,513,964 + CA264_14970 0.35 +1.3
3,513,975 + CA264_14970 0.36 +0.7
3,514,094 - CA264_14970 0.48 +1.8
3,514,099 + CA264_14970 0.49 -0.4
3,514,115 - CA264_14970 0.50 +0.9
3,514,118 + CA264_14970 0.51 -1.0
3,514,118 + CA264_14970 0.51 +1.0
3,514,247 - CA264_14970 0.63 +0.3
3,514,254 + CA264_14970 0.64 +1.6
3,514,254 + CA264_14970 0.64 +0.1
3,514,255 - CA264_14970 0.64 +0.7
3,514,397 - CA264_14970 0.78 -2.0
3,514,397 - CA264_14970 0.78 +1.9
3,514,397 - CA264_14970 0.78 +0.6
3,514,397 - CA264_14970 0.78 +1.2
3,514,401 - CA264_14970 0.79 +0.5
3,514,401 - CA264_14970 0.79 +0.1
3,514,594 - +0.5
3,514,595 + -2.2
3,514,599 + +1.1
3,514,630 - +2.1
3,514,656 - +0.5
3,514,656 - +0.6
3,514,656 - +0.9
3,514,656 - +0.1
3,514,665 + -0.8
3,514,665 + +0.6
3,514,666 - +1.3
3,514,666 - +0.8
3,514,666 - +2.3
3,514,672 + -0.4
3,514,750 + +0.2
3,514,750 + +0.1
3,514,751 - CA264_14975 0.10 -1.1
3,514,812 + CA264_14975 0.19 +0.1
3,514,812 + CA264_14975 0.19 +0.2
3,514,887 + CA264_14975 0.30 +0.2
3,514,888 - CA264_14975 0.30 +1.2
3,514,938 + CA264_14975 0.38 -0.2
3,514,945 - CA264_14975 0.39 +1.2
3,514,945 - CA264_14975 0.39 -0.9
3,514,945 - CA264_14975 0.39 -1.3
3,515,006 - CA264_14975 0.48 +0.0
3,515,010 + CA264_14975 0.48 +0.8
3,515,010 + CA264_14975 0.48 -1.2
3,515,011 - CA264_14975 0.48 +0.9
3,515,170 + CA264_14975 0.72 +2.2
3,515,251 - CA264_14975 0.84 -1.2
3,515,436 - +1.3
3,515,642 - CA264_14980 0.13 +0.4

Or see this region's nucleotide sequence