Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13915 and CA264_13920 are separated by 608 nucleotides CA264_13920 and CA264_13925 are separated by 122 nucleotides
CA264_13915: CA264_13915 - PAS domain-containing sensor histidine kinase, at 3,247,039 to 3,248,583
_13915
CA264_13920: CA264_13920 - PutA protein, at 3,249,192 to 3,250,274
_13920
CA264_13925: CA264_13925 - cytochrome c oxidase subunit I, at 3,250,397 to 3,252,217
_13925
Position (kb)
3249
3250
3251 Strain fitness (log2 ratio)
-2
-1
0
1 at 3248.252 kb on - strand, within CA264_13915 at 3248.320 kb on - strand, within CA264_13915 at 3248.345 kb on + strand, within CA264_13915 at 3248.345 kb on + strand, within CA264_13915 at 3248.485 kb on + strand at 3248.485 kb on - strand at 3248.493 kb on + strand at 3248.493 kb on + strand at 3248.496 kb on + strand at 3248.519 kb on - strand at 3248.589 kb on - strand at 3248.605 kb on + strand at 3248.606 kb on - strand at 3248.606 kb on - strand at 3248.738 kb on + strand at 3248.802 kb on - strand at 3248.841 kb on - strand at 3248.929 kb on - strand at 3249.019 kb on + strand at 3249.034 kb on + strand at 3249.061 kb on + strand at 3249.062 kb on - strand at 3249.062 kb on - strand at 3249.062 kb on - strand at 3249.062 kb on - strand at 3249.062 kb on - strand at 3249.062 kb on - strand at 3249.069 kb on - strand at 3249.074 kb on + strand at 3249.074 kb on + strand at 3249.382 kb on - strand, within CA264_13920 at 3249.481 kb on - strand, within CA264_13920 at 3249.481 kb on - strand, within CA264_13920 at 3249.496 kb on + strand, within CA264_13920 at 3249.637 kb on + strand, within CA264_13920 at 3249.640 kb on - strand, within CA264_13920 at 3249.640 kb on - strand, within CA264_13920 at 3249.708 kb on + strand, within CA264_13920 at 3249.771 kb on + strand, within CA264_13920 at 3249.844 kb on - strand, within CA264_13920 at 3249.970 kb on + strand, within CA264_13920 at 3250.011 kb on + strand, within CA264_13920 at 3250.133 kb on - strand, within CA264_13920 at 3250.140 kb on + strand, within CA264_13920 at 3250.184 kb on - strand at 3250.256 kb on - strand at 3250.272 kb on + strand at 3250.381 kb on - strand at 3250.399 kb on - strand at 3250.467 kb on + strand at 3250.494 kb on + strand at 3250.495 kb on - strand at 3250.500 kb on + strand at 3250.524 kb on - strand at 3250.629 kb on + strand, within CA264_13925 at 3250.634 kb on - strand, within CA264_13925 at 3250.634 kb on - strand, within CA264_13925 at 3250.651 kb on + strand, within CA264_13925 at 3250.651 kb on + strand, within CA264_13925 at 3250.688 kb on + strand, within CA264_13925 at 3250.689 kb on - strand, within CA264_13925 at 3250.715 kb on - strand, within CA264_13925 at 3250.743 kb on + strand, within CA264_13925 at 3250.746 kb on + strand, within CA264_13925 at 3250.747 kb on - strand, within CA264_13925 at 3250.776 kb on + strand, within CA264_13925 at 3250.800 kb on + strand, within CA264_13925 at 3250.833 kb on + strand, within CA264_13925 at 3250.834 kb on - strand, within CA264_13925 at 3250.885 kb on - strand, within CA264_13925 at 3250.953 kb on + strand, within CA264_13925 at 3250.953 kb on + strand, within CA264_13925 at 3250.953 kb on + strand, within CA264_13925 at 3251.021 kb on - strand, within CA264_13925 at 3251.040 kb on - strand, within CA264_13925 at 3251.102 kb on - strand, within CA264_13925 at 3251.131 kb on + strand, within CA264_13925 at 3251.131 kb on + strand, within CA264_13925 at 3251.131 kb on + strand, within CA264_13925 at 3251.205 kb on - strand, within CA264_13925 at 3251.236 kb on + strand, within CA264_13925
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 3,248,252 - CA264_13915 0.79 +1.4 3,248,320 - CA264_13915 0.83 +0.0 3,248,345 + CA264_13915 0.85 +0.1 3,248,345 + CA264_13915 0.85 -1.3 3,248,485 + +0.0 3,248,485 - +0.4 3,248,493 + -1.1 3,248,493 + -0.0 3,248,496 + -0.1 3,248,519 - +0.2 3,248,589 - -0.3 3,248,605 + +1.5 3,248,606 - -1.1 3,248,606 - -0.1 3,248,738 + +0.1 3,248,802 - +0.2 3,248,841 - -0.4 3,248,929 - +0.7 3,249,019 + +0.2 3,249,034 + -0.7 3,249,061 + -1.1 3,249,062 - -0.2 3,249,062 - +0.0 3,249,062 - -0.2 3,249,062 - -0.1 3,249,062 - +0.4 3,249,062 - -0.2 3,249,069 - +0.5 3,249,074 + -0.1 3,249,074 + -1.4 3,249,382 - CA264_13920 0.18 +0.1 3,249,481 - CA264_13920 0.27 -0.4 3,249,481 - CA264_13920 0.27 +0.2 3,249,496 + CA264_13920 0.28 -1.6 3,249,637 + CA264_13920 0.41 +0.4 3,249,640 - CA264_13920 0.41 +1.7 3,249,640 - CA264_13920 0.41 +0.2 3,249,708 + CA264_13920 0.48 -0.5 3,249,771 + CA264_13920 0.53 +0.1 3,249,844 - CA264_13920 0.60 +0.0 3,249,970 + CA264_13920 0.72 +0.0 3,250,011 + CA264_13920 0.76 +1.2 3,250,133 - CA264_13920 0.87 -0.3 3,250,140 + CA264_13920 0.88 -0.6 3,250,184 - +0.9 3,250,256 - -2.2 3,250,272 + +0.8 3,250,381 - +0.0 3,250,399 - +0.1 3,250,467 + -0.2 3,250,494 + -1.4 3,250,495 - +1.2 3,250,500 + +1.2 3,250,524 - -1.1 3,250,629 + CA264_13925 0.13 -0.2 3,250,634 - CA264_13925 0.13 +0.0 3,250,634 - CA264_13925 0.13 +1.1 3,250,651 + CA264_13925 0.14 -0.8 3,250,651 + CA264_13925 0.14 +0.7 3,250,688 + CA264_13925 0.16 +0.4 3,250,689 - CA264_13925 0.16 +0.1 3,250,715 - CA264_13925 0.17 -2.5 3,250,743 + CA264_13925 0.19 -0.7 3,250,746 + CA264_13925 0.19 +0.1 3,250,747 - CA264_13925 0.19 -1.8 3,250,776 + CA264_13925 0.21 -1.0 3,250,800 + CA264_13925 0.22 -0.6 3,250,833 + CA264_13925 0.24 -1.7 3,250,834 - CA264_13925 0.24 -0.7 3,250,885 - CA264_13925 0.27 -0.5 3,250,953 + CA264_13925 0.31 -0.3 3,250,953 + CA264_13925 0.31 -0.4 3,250,953 + CA264_13925 0.31 +0.2 3,251,021 - CA264_13925 0.34 -0.1 3,251,040 - CA264_13925 0.35 +0.2 3,251,102 - CA264_13925 0.39 +0.2 3,251,131 + CA264_13925 0.40 +0.4 3,251,131 + CA264_13925 0.40 -0.6 3,251,131 + CA264_13925 0.40 -0.0 3,251,205 - CA264_13925 0.44 +0.8 3,251,236 + CA264_13925 0.46 +0.8
Or see this region's nucleotide sequence