Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13405 and CA264_13410 overlap by 4 nucleotides CA264_13410 and CA264_13415 are separated by 596 nucleotides
CA264_13405: CA264_13405 - NAD-dependent dehydratase, at 3,126,410 to 3,127,378
_13405
CA264_13410: CA264_13410 - UDP-glucose 6-dehydrogenase, at 3,127,375 to 3,128,733
_13410
CA264_13415: CA264_13415 - alpha/beta hydrolase, at 3,129,330 to 3,130,223
_13415
Position (kb)
3127
3128
3129 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 3126.397 kb on + strand at 3126.397 kb on + strand at 3126.400 kb on + strand at 3126.400 kb on + strand at 3126.408 kb on - strand at 3126.408 kb on - strand at 3126.433 kb on + strand at 3126.434 kb on - strand at 3126.679 kb on - strand, within CA264_13405 at 3126.679 kb on - strand, within CA264_13405 at 3126.727 kb on - strand, within CA264_13405 at 3126.810 kb on - strand, within CA264_13405 at 3126.843 kb on + strand, within CA264_13405 at 3126.894 kb on + strand, within CA264_13405 at 3126.895 kb on - strand, within CA264_13405 at 3126.895 kb on - strand, within CA264_13405 at 3126.937 kb on - strand, within CA264_13405 at 3126.975 kb on + strand, within CA264_13405 at 3127.011 kb on + strand, within CA264_13405 at 3127.165 kb on - strand, within CA264_13405 at 3127.165 kb on - strand, within CA264_13405 at 3127.212 kb on + strand, within CA264_13405 at 3127.213 kb on - strand, within CA264_13405 at 3127.249 kb on + strand, within CA264_13405 at 3127.297 kb on - strand at 3128.752 kb on - strand at 3128.752 kb on - strand at 3128.752 kb on - strand at 3128.757 kb on + strand at 3128.757 kb on + strand at 3128.758 kb on - strand at 3128.758 kb on - strand at 3128.759 kb on + strand at 3128.762 kb on + strand at 3128.763 kb on - strand at 3128.832 kb on - strand at 3128.846 kb on - strand at 3128.851 kb on - strand at 3128.851 kb on - strand at 3128.873 kb on + strand at 3128.874 kb on - strand at 3128.878 kb on - strand at 3128.889 kb on + strand at 3128.889 kb on - strand at 3128.982 kb on - strand at 3128.982 kb on - strand at 3129.052 kb on - strand at 3129.101 kb on - strand at 3129.101 kb on - strand at 3129.120 kb on + strand at 3129.123 kb on + strand at 3129.141 kb on - strand at 3129.194 kb on - strand at 3129.199 kb on - strand at 3129.269 kb on + strand at 3129.270 kb on - strand at 3129.300 kb on - strand at 3129.302 kb on - strand at 3129.307 kb on - strand at 3129.329 kb on + strand at 3129.361 kb on - strand at 3129.374 kb on + strand at 3129.375 kb on - strand at 3129.379 kb on - strand at 3129.408 kb on + strand at 3129.409 kb on - strand at 3129.410 kb on + strand at 3129.412 kb on + strand at 3129.412 kb on + strand at 3129.412 kb on + strand at 3129.412 kb on + strand at 3129.413 kb on - strand at 3129.413 kb on - strand at 3129.489 kb on - strand, within CA264_13415 at 3129.571 kb on - strand, within CA264_13415 at 3129.626 kb on - strand, within CA264_13415 at 3129.646 kb on + strand, within CA264_13415 at 3129.647 kb on - strand, within CA264_13415 at 3129.679 kb on - strand, within CA264_13415
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 3,126,397 + +0.7 3,126,397 + +1.2 3,126,400 + -1.3 3,126,400 + -1.4 3,126,408 - +0.6 3,126,408 - +0.7 3,126,433 + +0.7 3,126,434 - -1.7 3,126,679 - CA264_13405 0.28 -5.9 3,126,679 - CA264_13405 0.28 -2.3 3,126,727 - CA264_13405 0.33 -2.9 3,126,810 - CA264_13405 0.41 -1.0 3,126,843 + CA264_13405 0.45 -1.0 3,126,894 + CA264_13405 0.50 -3.5 3,126,895 - CA264_13405 0.50 -4.0 3,126,895 - CA264_13405 0.50 -1.4 3,126,937 - CA264_13405 0.54 -1.0 3,126,975 + CA264_13405 0.58 -1.7 3,127,011 + CA264_13405 0.62 -1.1 3,127,165 - CA264_13405 0.78 +0.6 3,127,165 - CA264_13405 0.78 -2.8 3,127,212 + CA264_13405 0.83 -0.4 3,127,213 - CA264_13405 0.83 -2.1 3,127,249 + CA264_13405 0.87 -1.3 3,127,297 - -2.4 3,128,752 - +0.2 3,128,752 - -1.0 3,128,752 - -1.2 3,128,757 + -1.6 3,128,757 + -0.1 3,128,758 - -0.2 3,128,758 - +0.1 3,128,759 + +0.1 3,128,762 + +2.6 3,128,763 - -0.2 3,128,832 - +1.0 3,128,846 - -1.0 3,128,851 - +0.3 3,128,851 - -0.2 3,128,873 + -0.2 3,128,874 - +1.1 3,128,878 - +0.3 3,128,889 + -0.7 3,128,889 - +0.2 3,128,982 - +0.5 3,128,982 - -1.6 3,129,052 - +2.0 3,129,101 - +0.4 3,129,101 - +0.7 3,129,120 + +0.4 3,129,123 + +0.2 3,129,141 - -0.7 3,129,194 - +0.0 3,129,199 - +0.8 3,129,269 + +0.3 3,129,270 - +0.3 3,129,300 - +2.2 3,129,302 - +0.1 3,129,307 - -0.8 3,129,329 + +0.5 3,129,361 - +0.1 3,129,374 + +0.5 3,129,375 - -0.4 3,129,379 - -0.2 3,129,408 + -0.6 3,129,409 - +0.4 3,129,410 + +0.8 3,129,412 + +0.4 3,129,412 + +0.5 3,129,412 + -0.7 3,129,412 + +1.7 3,129,413 - -0.0 3,129,413 - +1.5 3,129,489 - CA264_13415 0.18 -0.0 3,129,571 - CA264_13415 0.27 +0.6 3,129,626 - CA264_13415 0.33 -0.9 3,129,646 + CA264_13415 0.35 -0.6 3,129,647 - CA264_13415 0.35 -0.6 3,129,679 - CA264_13415 0.39 -0.5
Or see this region's nucleotide sequence