Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12165

Experiment: m.b. Vancomycin 0.016 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_12155 and CA264_12160 are separated by 315 nucleotidesCA264_12160 and CA264_12165 overlap by 17 nucleotidesCA264_12165 and CA264_12170 are separated by 97 nucleotides CA264_12155: CA264_12155 - histidine phosphatase family protein, at 2,835,141 to 2,835,725 _12155 CA264_12160: CA264_12160 - transcriptional regulator, at 2,836,041 to 2,836,439 _12160 CA264_12165: CA264_12165 - hypothetical protein, at 2,836,423 to 2,837,733 _12165 CA264_12170: CA264_12170 - hypothetical protein, at 2,837,831 to 2,838,925 _12170 CA264_12175: CA264_12175 - hypothetical protein, at 2,838,565 to 2,839,107 _12175 Position (kb) 2836 2837 2838Strain fitness (log2 ratio) -2 -1 0 1at 2836.020 kb on + strandat 2836.149 kb on + strand, within CA264_12160at 2836.230 kb on + strand, within CA264_12160at 2836.433 kb on + strandat 2836.434 kb on - strandat 2836.441 kb on + strandat 2836.442 kb on - strandat 2836.442 kb on - strandat 2836.534 kb on + strandat 2836.592 kb on + strand, within CA264_12165at 2836.837 kb on + strand, within CA264_12165at 2836.837 kb on + strand, within CA264_12165at 2836.881 kb on + strand, within CA264_12165at 2837.115 kb on + strand, within CA264_12165at 2837.116 kb on - strand, within CA264_12165at 2837.145 kb on + strand, within CA264_12165at 2837.145 kb on + strand, within CA264_12165at 2837.146 kb on - strand, within CA264_12165at 2837.146 kb on - strand, within CA264_12165at 2837.175 kb on + strand, within CA264_12165at 2837.194 kb on - strand, within CA264_12165at 2837.240 kb on + strand, within CA264_12165at 2837.339 kb on + strand, within CA264_12165at 2837.423 kb on - strand, within CA264_12165at 2837.423 kb on - strand, within CA264_12165at 2837.424 kb on + strand, within CA264_12165at 2837.425 kb on - strand, within CA264_12165at 2837.428 kb on + strand, within CA264_12165at 2837.529 kb on - strand, within CA264_12165at 2837.614 kb on - strandat 2837.616 kb on - strandat 2837.628 kb on + strandat 2837.701 kb on + strandat 2837.732 kb on - strandat 2837.734 kb on + strandat 2837.783 kb on + strandat 2837.794 kb on + strandat 2837.794 kb on + strandat 2837.936 kb on + strandat 2837.936 kb on + strandat 2837.942 kb on + strand, within CA264_12170at 2837.943 kb on - strand, within CA264_12170at 2837.943 kb on - strand, within CA264_12170at 2837.943 kb on - strand, within CA264_12170at 2837.943 kb on - strand, within CA264_12170at 2838.414 kb on + strand, within CA264_12170at 2838.414 kb on + strand, within CA264_12170at 2838.436 kb on - strand, within CA264_12170at 2838.471 kb on - strand, within CA264_12170at 2838.472 kb on + strand, within CA264_12170at 2838.473 kb on - strand, within CA264_12170

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
remove
2,836,020 + -1.0
2,836,149 + CA264_12160 0.27 -0.4
2,836,230 + CA264_12160 0.47 -0.2
2,836,433 + +0.3
2,836,434 - -0.4
2,836,441 + -0.0
2,836,442 - -0.6
2,836,442 - -1.5
2,836,534 + -0.1
2,836,592 + CA264_12165 0.13 -0.1
2,836,837 + CA264_12165 0.32 -1.8
2,836,837 + CA264_12165 0.32 -0.4
2,836,881 + CA264_12165 0.35 -0.3
2,837,115 + CA264_12165 0.53 +0.2
2,837,116 - CA264_12165 0.53 -1.9
2,837,145 + CA264_12165 0.55 +0.6
2,837,145 + CA264_12165 0.55 -0.9
2,837,146 - CA264_12165 0.55 -0.8
2,837,146 - CA264_12165 0.55 +0.5
2,837,175 + CA264_12165 0.57 -1.4
2,837,194 - CA264_12165 0.59 -0.9
2,837,240 + CA264_12165 0.62 -0.9
2,837,339 + CA264_12165 0.70 -0.6
2,837,423 - CA264_12165 0.76 +0.9
2,837,423 - CA264_12165 0.76 -0.1
2,837,424 + CA264_12165 0.76 -2.0
2,837,425 - CA264_12165 0.76 -1.9
2,837,428 + CA264_12165 0.77 -1.1
2,837,529 - CA264_12165 0.84 -0.2
2,837,614 - -0.3
2,837,616 - +0.1
2,837,628 + +0.5
2,837,701 + +1.3
2,837,732 - -0.6
2,837,734 + +0.9
2,837,783 + +0.6
2,837,794 + -1.0
2,837,794 + +1.5
2,837,936 + -0.2
2,837,936 + +0.6
2,837,942 + CA264_12170 0.10 -0.1
2,837,943 - CA264_12170 0.10 +0.2
2,837,943 - CA264_12170 0.10 -0.2
2,837,943 - CA264_12170 0.10 +0.0
2,837,943 - CA264_12170 0.10 -0.3
2,838,414 + CA264_12170 0.53 +0.8
2,838,414 + CA264_12170 0.53 -0.6
2,838,436 - CA264_12170 0.55 -0.1
2,838,471 - CA264_12170 0.58 -0.9
2,838,472 + CA264_12170 0.59 +0.6
2,838,473 - CA264_12170 0.59 +0.4

Or see this region's nucleotide sequence