Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12030 and CA264_12035 are separated by 317 nucleotides CA264_12035 and CA264_12040 are separated by 48 nucleotides CA264_12040 and CA264_12045 are separated by 21 nucleotides
CA264_12030: CA264_12030 - aspartate aminotransferase family protein, at 2,798,956 to 2,800,152
_12030
CA264_12035: CA264_12035 - SLC13 family permease, at 2,800,470 to 2,802,227
_12035
CA264_12040: CA264_12040 - hypothetical protein, at 2,802,276 to 2,802,902
_12040
CA264_12045: CA264_12045 - hypothetical protein, at 2,802,924 to 2,803,259
_12045
Position (kb)
2800
2801
2802
2803 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2799.501 kb on + strand, within CA264_12030 at 2799.681 kb on - strand, within CA264_12030 at 2799.729 kb on + strand, within CA264_12030 at 2799.771 kb on + strand, within CA264_12030 at 2799.771 kb on + strand, within CA264_12030 at 2799.860 kb on + strand, within CA264_12030 at 2799.861 kb on - strand, within CA264_12030 at 2800.021 kb on - strand, within CA264_12030 at 2800.197 kb on + strand at 2800.238 kb on - strand at 2800.244 kb on - strand at 2800.340 kb on + strand at 2800.345 kb on + strand at 2800.345 kb on + strand at 2800.346 kb on - strand at 2800.346 kb on - strand at 2800.376 kb on + strand at 2800.377 kb on - strand at 2800.377 kb on - strand at 2800.377 kb on - strand at 2800.418 kb on - strand at 2800.432 kb on + strand at 2800.433 kb on - strand at 2800.433 kb on - strand at 2800.449 kb on + strand at 2800.450 kb on - strand at 2800.451 kb on + strand at 2800.451 kb on + strand at 2800.452 kb on - strand at 2800.452 kb on - strand at 2800.517 kb on - strand at 2800.559 kb on + strand at 2800.589 kb on + strand at 2800.640 kb on + strand at 2800.641 kb on - strand at 2800.642 kb on + strand at 2800.643 kb on - strand at 2800.657 kb on + strand, within CA264_12035 at 2800.661 kb on + strand, within CA264_12035 at 2800.662 kb on - strand, within CA264_12035 at 2800.765 kb on + strand, within CA264_12035 at 2801.005 kb on + strand, within CA264_12035 at 2801.037 kb on + strand, within CA264_12035 at 2801.038 kb on - strand, within CA264_12035 at 2801.038 kb on - strand, within CA264_12035 at 2801.311 kb on + strand, within CA264_12035 at 2801.336 kb on + strand, within CA264_12035 at 2801.480 kb on + strand, within CA264_12035 at 2801.481 kb on - strand, within CA264_12035 at 2801.673 kb on - strand, within CA264_12035 at 2801.677 kb on + strand, within CA264_12035 at 2801.781 kb on + strand, within CA264_12035 at 2801.782 kb on - strand, within CA264_12035 at 2801.990 kb on - strand, within CA264_12035 at 2802.060 kb on - strand at 2802.132 kb on + strand at 2802.153 kb on - strand at 2802.284 kb on + strand at 2802.284 kb on + strand at 2802.285 kb on - strand at 2802.286 kb on + strand at 2802.286 kb on + strand at 2802.286 kb on + strand at 2802.287 kb on - strand at 2802.287 kb on - strand at 2802.287 kb on - strand at 2802.421 kb on + strand, within CA264_12040 at 2802.443 kb on - strand, within CA264_12040 at 2802.454 kb on + strand, within CA264_12040 at 2802.481 kb on + strand, within CA264_12040 at 2802.622 kb on + strand, within CA264_12040 at 2802.678 kb on + strand, within CA264_12040 at 2802.678 kb on + strand, within CA264_12040 at 2802.679 kb on - strand, within CA264_12040 at 2802.689 kb on - strand, within CA264_12040 at 2802.713 kb on + strand, within CA264_12040 at 2802.731 kb on + strand, within CA264_12040 at 2802.731 kb on + strand, within CA264_12040 at 2802.741 kb on + strand, within CA264_12040 at 2802.744 kb on + strand, within CA264_12040 at 2802.745 kb on - strand, within CA264_12040 at 2802.753 kb on - strand, within CA264_12040 at 2802.856 kb on - strand at 2802.886 kb on - strand at 2802.978 kb on + strand, within CA264_12045 at 2802.978 kb on + strand, within CA264_12045 at 2802.978 kb on + strand, within CA264_12045 at 2802.979 kb on - strand, within CA264_12045 at 2802.984 kb on - strand, within CA264_12045 at 2803.035 kb on - strand, within CA264_12045 at 2803.057 kb on + strand, within CA264_12045 at 2803.057 kb on + strand, within CA264_12045 at 2803.057 kb on + strand, within CA264_12045 at 2803.057 kb on + strand, within CA264_12045 at 2803.057 kb on + strand, within CA264_12045 at 2803.058 kb on - strand, within CA264_12045 at 2803.074 kb on + strand, within CA264_12045 at 2803.074 kb on + strand, within CA264_12045 at 2803.074 kb on + strand, within CA264_12045 at 2803.086 kb on - strand, within CA264_12045 at 2803.086 kb on - strand, within CA264_12045 at 2803.121 kb on + strand, within CA264_12045 at 2803.145 kb on - strand, within CA264_12045 at 2803.145 kb on - strand, within CA264_12045 at 2803.217 kb on - strand, within CA264_12045
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 2,799,501 + CA264_12030 0.46 +1.0 2,799,681 - CA264_12030 0.61 +1.8 2,799,729 + CA264_12030 0.65 -1.8 2,799,771 + CA264_12030 0.68 -2.0 2,799,771 + CA264_12030 0.68 -0.8 2,799,860 + CA264_12030 0.76 +0.6 2,799,861 - CA264_12030 0.76 -0.5 2,800,021 - CA264_12030 0.89 -0.0 2,800,197 + -0.0 2,800,238 - -0.3 2,800,244 - -1.1 2,800,340 + -1.6 2,800,345 + -0.5 2,800,345 + -0.3 2,800,346 - +0.4 2,800,346 - -2.8 2,800,376 + -0.2 2,800,377 - +0.8 2,800,377 - -0.8 2,800,377 - +0.8 2,800,418 - +0.0 2,800,432 + +0.4 2,800,433 - +0.3 2,800,433 - -0.2 2,800,449 + +0.2 2,800,450 - -0.1 2,800,451 + -0.2 2,800,451 + -0.2 2,800,452 - +1.6 2,800,452 - +1.9 2,800,517 - -1.2 2,800,559 + +0.0 2,800,589 + +0.2 2,800,640 + -0.3 2,800,641 - +0.4 2,800,642 + +0.8 2,800,643 - -0.1 2,800,657 + CA264_12035 0.11 +0.8 2,800,661 + CA264_12035 0.11 +0.1 2,800,662 - CA264_12035 0.11 +0.2 2,800,765 + CA264_12035 0.17 -0.8 2,801,005 + CA264_12035 0.30 +0.0 2,801,037 + CA264_12035 0.32 +0.9 2,801,038 - CA264_12035 0.32 -2.1 2,801,038 - CA264_12035 0.32 -0.2 2,801,311 + CA264_12035 0.48 -0.2 2,801,336 + CA264_12035 0.49 -0.1 2,801,480 + CA264_12035 0.57 -1.0 2,801,481 - CA264_12035 0.58 -0.6 2,801,673 - CA264_12035 0.68 +2.2 2,801,677 + CA264_12035 0.69 -1.6 2,801,781 + CA264_12035 0.75 +0.0 2,801,782 - CA264_12035 0.75 -0.3 2,801,990 - CA264_12035 0.86 +0.0 2,802,060 - -0.4 2,802,132 + -0.2 2,802,153 - -0.9 2,802,284 + +0.5 2,802,284 + -0.6 2,802,285 - -0.4 2,802,286 + -0.2 2,802,286 + -1.0 2,802,286 + +0.1 2,802,287 - +0.2 2,802,287 - -0.1 2,802,287 - -0.4 2,802,421 + CA264_12040 0.23 -0.7 2,802,443 - CA264_12040 0.27 +0.2 2,802,454 + CA264_12040 0.28 +0.5 2,802,481 + CA264_12040 0.33 -1.6 2,802,622 + CA264_12040 0.55 +0.1 2,802,678 + CA264_12040 0.64 -0.6 2,802,678 + CA264_12040 0.64 -2.0 2,802,679 - CA264_12040 0.64 -1.1 2,802,689 - CA264_12040 0.66 +0.0 2,802,713 + CA264_12040 0.70 +0.1 2,802,731 + CA264_12040 0.73 -0.4 2,802,731 + CA264_12040 0.73 +0.1 2,802,741 + CA264_12040 0.74 -0.5 2,802,744 + CA264_12040 0.75 +0.2 2,802,745 - CA264_12040 0.75 -1.1 2,802,753 - CA264_12040 0.76 +0.4 2,802,856 - +0.2 2,802,886 - +1.0 2,802,978 + CA264_12045 0.16 -0.1 2,802,978 + CA264_12045 0.16 -0.7 2,802,978 + CA264_12045 0.16 -1.6 2,802,979 - CA264_12045 0.16 -0.7 2,802,984 - CA264_12045 0.18 -0.8 2,803,035 - CA264_12045 0.33 -0.4 2,803,057 + CA264_12045 0.40 -1.1 2,803,057 + CA264_12045 0.40 +0.1 2,803,057 + CA264_12045 0.40 +0.6 2,803,057 + CA264_12045 0.40 +1.4 2,803,057 + CA264_12045 0.40 +0.2 2,803,058 - CA264_12045 0.40 +0.8 2,803,074 + CA264_12045 0.45 -0.4 2,803,074 + CA264_12045 0.45 -1.0 2,803,074 + CA264_12045 0.45 -0.6 2,803,086 - CA264_12045 0.48 -0.6 2,803,086 - CA264_12045 0.48 -1.2 2,803,121 + CA264_12045 0.59 -0.5 2,803,145 - CA264_12045 0.66 +1.0 2,803,145 - CA264_12045 0.66 +0.2 2,803,217 - CA264_12045 0.87 -0.2
Or see this region's nucleotide sequence