Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11195

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11190 and CA264_11195 are separated by 147 nucleotidesCA264_11195 and CA264_11200 are separated by 133 nucleotides CA264_11190: CA264_11190 - peptidase M23, at 2,591,632 to 2,592,897 _11190 CA264_11195: CA264_11195 - phosphatase, at 2,593,045 to 2,593,944 _11195 CA264_11200: CA264_11200 - RNA degradosome polyphosphate kinase, at 2,594,078 to 2,596,177 _11200 Position (kb) 2593 2594Strain fitness (log2 ratio) -2 -1 0 1 2at 2592.045 kb on + strand, within CA264_11190at 2592.289 kb on + strand, within CA264_11190at 2592.289 kb on + strand, within CA264_11190at 2592.290 kb on - strand, within CA264_11190at 2592.290 kb on - strand, within CA264_11190at 2592.412 kb on + strand, within CA264_11190at 2592.448 kb on + strand, within CA264_11190at 2592.449 kb on - strand, within CA264_11190at 2592.493 kb on - strand, within CA264_11190at 2592.493 kb on - strand, within CA264_11190at 2592.609 kb on - strand, within CA264_11190at 2592.609 kb on - strand, within CA264_11190at 2592.664 kb on + strand, within CA264_11190at 2592.664 kb on + strand, within CA264_11190at 2592.665 kb on - strand, within CA264_11190at 2592.696 kb on + strand, within CA264_11190at 2592.696 kb on + strand, within CA264_11190at 2592.854 kb on + strandat 2592.854 kb on + strandat 2592.988 kb on + strandat 2592.991 kb on + strandat 2593.007 kb on + strandat 2593.007 kb on + strandat 2593.007 kb on + strandat 2593.008 kb on - strandat 2593.008 kb on - strandat 2593.011 kb on + strandat 2593.022 kb on + strandat 2593.022 kb on + strandat 2593.023 kb on - strandat 2593.052 kb on + strandat 2593.052 kb on + strandat 2593.062 kb on - strandat 2593.062 kb on - strandat 2593.062 kb on - strandat 2593.103 kb on + strandat 2593.144 kb on + strand, within CA264_11195at 2593.144 kb on + strand, within CA264_11195at 2593.145 kb on - strand, within CA264_11195at 2593.194 kb on + strand, within CA264_11195at 2593.223 kb on + strand, within CA264_11195at 2593.223 kb on + strand, within CA264_11195at 2593.224 kb on - strand, within CA264_11195at 2593.224 kb on - strand, within CA264_11195at 2593.233 kb on - strand, within CA264_11195at 2593.276 kb on + strand, within CA264_11195at 2593.277 kb on - strand, within CA264_11195at 2593.468 kb on - strand, within CA264_11195at 2593.609 kb on + strand, within CA264_11195at 2593.723 kb on + strand, within CA264_11195at 2593.723 kb on + strand, within CA264_11195at 2593.724 kb on - strand, within CA264_11195at 2593.724 kb on - strand, within CA264_11195at 2593.759 kb on - strand, within CA264_11195at 2593.814 kb on - strand, within CA264_11195at 2593.848 kb on + strand, within CA264_11195at 2593.848 kb on + strand, within CA264_11195at 2593.979 kb on + strandat 2593.989 kb on - strandat 2593.990 kb on + strandat 2593.991 kb on - strandat 2594.013 kb on + strandat 2594.013 kb on + strandat 2594.023 kb on + strandat 2594.124 kb on - strandat 2594.199 kb on + strandat 2594.226 kb on + strandat 2594.227 kb on - strandat 2594.364 kb on + strand, within CA264_11200at 2594.735 kb on + strand, within CA264_11200at 2594.741 kb on + strand, within CA264_11200at 2594.795 kb on + strand, within CA264_11200at 2594.796 kb on - strand, within CA264_11200

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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2,592,045 + CA264_11190 0.33 -0.0
2,592,289 + CA264_11190 0.52 +1.8
2,592,289 + CA264_11190 0.52 -0.1
2,592,290 - CA264_11190 0.52 -0.3
2,592,290 - CA264_11190 0.52 -0.7
2,592,412 + CA264_11190 0.62 +0.9
2,592,448 + CA264_11190 0.64 -0.1
2,592,449 - CA264_11190 0.65 -0.2
2,592,493 - CA264_11190 0.68 +1.3
2,592,493 - CA264_11190 0.68 -0.2
2,592,609 - CA264_11190 0.77 -1.3
2,592,609 - CA264_11190 0.77 +0.1
2,592,664 + CA264_11190 0.82 -0.9
2,592,664 + CA264_11190 0.82 -0.6
2,592,665 - CA264_11190 0.82 -0.2
2,592,696 + CA264_11190 0.84 +0.4
2,592,696 + CA264_11190 0.84 -0.3
2,592,854 + +0.2
2,592,854 + +0.1
2,592,988 + +0.7
2,592,991 + -1.5
2,593,007 + +0.0
2,593,007 + -0.9
2,593,007 + -0.8
2,593,008 - +0.9
2,593,008 - +0.5
2,593,011 + -0.6
2,593,022 + -0.7
2,593,022 + -1.8
2,593,023 - +0.4
2,593,052 + +1.1
2,593,052 + -0.7
2,593,062 - -0.7
2,593,062 - -0.4
2,593,062 - -1.4
2,593,103 + +0.7
2,593,144 + CA264_11195 0.11 -0.1
2,593,144 + CA264_11195 0.11 -0.1
2,593,145 - CA264_11195 0.11 +0.1
2,593,194 + CA264_11195 0.17 -0.6
2,593,223 + CA264_11195 0.20 +1.3
2,593,223 + CA264_11195 0.20 +0.5
2,593,224 - CA264_11195 0.20 -1.9
2,593,224 - CA264_11195 0.20 +0.8
2,593,233 - CA264_11195 0.21 +0.9
2,593,276 + CA264_11195 0.26 -0.5
2,593,277 - CA264_11195 0.26 -1.8
2,593,468 - CA264_11195 0.47 -1.4
2,593,609 + CA264_11195 0.63 +1.1
2,593,723 + CA264_11195 0.75 +0.0
2,593,723 + CA264_11195 0.75 -0.2
2,593,724 - CA264_11195 0.75 +0.2
2,593,724 - CA264_11195 0.75 -0.3
2,593,759 - CA264_11195 0.79 +0.5
2,593,814 - CA264_11195 0.85 +0.1
2,593,848 + CA264_11195 0.89 -0.4
2,593,848 + CA264_11195 0.89 -0.5
2,593,979 + +0.2
2,593,989 - +0.0
2,593,990 + +0.1
2,593,991 - -1.0
2,594,013 + -0.9
2,594,013 + -0.8
2,594,023 + -0.2
2,594,124 - -0.6
2,594,199 + -1.0
2,594,226 + -1.5
2,594,227 - -1.1
2,594,364 + CA264_11200 0.14 -1.7
2,594,735 + CA264_11200 0.31 -1.0
2,594,741 + CA264_11200 0.32 -1.0
2,594,795 + CA264_11200 0.34 -0.9
2,594,796 - CA264_11200 0.34 -2.1

Or see this region's nucleotide sequence