Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10985

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10975 and CA264_10980 are separated by 54 nucleotidesCA264_10980 and CA264_10985 are separated by 79 nucleotidesCA264_10985 and CA264_10990 are separated by 74 nucleotides CA264_10975: CA264_10975 - Pathogenesis-related transcriptional factor and ERF protein, at 2,531,543 to 2,532,112 _10975 CA264_10980: CA264_10980 - peptidase M23, at 2,532,167 to 2,532,883 _10980 CA264_10985: CA264_10985 - mechanosensitive ion channel protein MscS, at 2,532,963 to 2,533,805 _10985 CA264_10990: CA264_10990 - ABC transporter permease, at 2,533,880 to 2,535,088 _10990 Position (kb) 2532 2533 2534Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2531.997 kb on + strand, within CA264_10975at 2532.018 kb on - strand, within CA264_10975at 2532.166 kb on + strandat 2532.166 kb on + strandat 2532.167 kb on - strandat 2532.568 kb on + strand, within CA264_10980at 2532.602 kb on + strand, within CA264_10980at 2532.603 kb on - strand, within CA264_10980at 2532.611 kb on + strand, within CA264_10980at 2532.612 kb on - strand, within CA264_10980at 2532.742 kb on + strand, within CA264_10980at 2532.744 kb on + strand, within CA264_10980at 2532.744 kb on + strand, within CA264_10980at 2532.809 kb on + strand, within CA264_10980at 2532.809 kb on + strand, within CA264_10980at 2532.810 kb on - strand, within CA264_10980at 2532.881 kb on + strandat 2532.951 kb on + strandat 2532.957 kb on - strandat 2533.015 kb on - strandat 2533.015 kb on - strandat 2533.079 kb on - strand, within CA264_10985at 2533.079 kb on - strand, within CA264_10985at 2533.091 kb on - strand, within CA264_10985at 2533.153 kb on + strand, within CA264_10985at 2533.160 kb on + strand, within CA264_10985at 2533.160 kb on + strand, within CA264_10985at 2533.226 kb on - strand, within CA264_10985at 2533.415 kb on + strand, within CA264_10985at 2533.467 kb on + strand, within CA264_10985at 2533.506 kb on - strand, within CA264_10985at 2533.537 kb on + strand, within CA264_10985at 2533.537 kb on + strand, within CA264_10985at 2533.547 kb on + strand, within CA264_10985at 2533.548 kb on - strand, within CA264_10985at 2533.548 kb on - strand, within CA264_10985at 2533.548 kb on - strand, within CA264_10985at 2533.549 kb on + strand, within CA264_10985at 2533.549 kb on + strand, within CA264_10985at 2533.549 kb on + strand, within CA264_10985at 2533.550 kb on - strand, within CA264_10985at 2533.550 kb on - strand, within CA264_10985at 2533.582 kb on + strand, within CA264_10985at 2533.634 kb on + strand, within CA264_10985at 2533.803 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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2,531,997 + CA264_10975 0.80 -0.9
2,532,018 - CA264_10975 0.83 -4.0
2,532,166 + -0.2
2,532,166 + +0.3
2,532,167 - +0.3
2,532,568 + CA264_10980 0.56 -0.9
2,532,602 + CA264_10980 0.61 +1.4
2,532,603 - CA264_10980 0.61 +0.3
2,532,611 + CA264_10980 0.62 +0.9
2,532,612 - CA264_10980 0.62 -0.6
2,532,742 + CA264_10980 0.80 +0.2
2,532,744 + CA264_10980 0.80 +2.6
2,532,744 + CA264_10980 0.80 -0.9
2,532,809 + CA264_10980 0.90 +0.3
2,532,809 + CA264_10980 0.90 -0.5
2,532,810 - CA264_10980 0.90 -0.5
2,532,881 + +1.6
2,532,951 + -1.2
2,532,957 - -0.0
2,533,015 - -1.0
2,533,015 - -3.7
2,533,079 - CA264_10985 0.14 -2.4
2,533,079 - CA264_10985 0.14 +0.2
2,533,091 - CA264_10985 0.15 -0.8
2,533,153 + CA264_10985 0.23 -0.5
2,533,160 + CA264_10985 0.23 +0.7
2,533,160 + CA264_10985 0.23 +0.4
2,533,226 - CA264_10985 0.31 -0.2
2,533,415 + CA264_10985 0.54 +1.1
2,533,467 + CA264_10985 0.60 -2.9
2,533,506 - CA264_10985 0.64 -1.2
2,533,537 + CA264_10985 0.68 -3.1
2,533,537 + CA264_10985 0.68 -0.1
2,533,547 + CA264_10985 0.69 -1.1
2,533,548 - CA264_10985 0.69 -0.6
2,533,548 - CA264_10985 0.69 -0.6
2,533,548 - CA264_10985 0.69 -0.2
2,533,549 + CA264_10985 0.70 -0.2
2,533,549 + CA264_10985 0.70 +0.0
2,533,549 + CA264_10985 0.70 +1.0
2,533,550 - CA264_10985 0.70 -1.6
2,533,550 - CA264_10985 0.70 -0.4
2,533,582 + CA264_10985 0.73 -1.7
2,533,634 + CA264_10985 0.80 -0.9
2,533,803 + +1.2

Or see this region's nucleotide sequence