Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08765

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08760 and CA264_08765 are separated by 12 nucleotidesCA264_08765 and CA264_08770 are separated by 11 nucleotides CA264_08760: CA264_08760 - hypothetical protein, at 2,043,536 to 2,044,291 _08760 CA264_08765: CA264_08765 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 2,044,304 to 2,045,968 _08765 CA264_08770: CA264_08770 - SusC/RagA family TonB-linked outer membrane protein, at 2,045,980 to 2,049,009 _08770 Position (kb) 2044 2045 2046Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2043.415 kb on + strandat 2043.551 kb on + strandat 2043.551 kb on + strandat 2043.644 kb on + strand, within CA264_08760at 2043.667 kb on + strand, within CA264_08760at 2043.682 kb on - strand, within CA264_08760at 2043.682 kb on - strand, within CA264_08760at 2043.682 kb on - strand, within CA264_08760at 2043.691 kb on + strand, within CA264_08760at 2043.692 kb on - strand, within CA264_08760at 2043.749 kb on + strand, within CA264_08760at 2043.853 kb on + strand, within CA264_08760at 2043.853 kb on + strand, within CA264_08760at 2043.854 kb on - strand, within CA264_08760at 2043.856 kb on - strand, within CA264_08760at 2043.860 kb on + strand, within CA264_08760at 2043.860 kb on + strand, within CA264_08760at 2043.861 kb on - strand, within CA264_08760at 2043.870 kb on - strand, within CA264_08760at 2043.882 kb on - strand, within CA264_08760at 2043.888 kb on + strand, within CA264_08760at 2043.888 kb on + strand, within CA264_08760at 2043.962 kb on - strand, within CA264_08760at 2044.033 kb on - strand, within CA264_08760at 2044.067 kb on + strand, within CA264_08760at 2044.067 kb on + strand, within CA264_08760at 2044.068 kb on - strand, within CA264_08760at 2044.068 kb on - strand, within CA264_08760at 2044.094 kb on - strand, within CA264_08760at 2044.096 kb on + strand, within CA264_08760at 2044.117 kb on + strand, within CA264_08760at 2044.131 kb on + strand, within CA264_08760at 2044.132 kb on - strand, within CA264_08760at 2044.132 kb on - strand, within CA264_08760at 2044.178 kb on - strand, within CA264_08760at 2044.179 kb on + strand, within CA264_08760at 2044.189 kb on + strand, within CA264_08760at 2044.189 kb on + strand, within CA264_08760at 2044.282 kb on + strandat 2044.295 kb on + strandat 2044.305 kb on + strandat 2044.305 kb on + strandat 2044.316 kb on - strandat 2044.329 kb on + strandat 2044.329 kb on + strandat 2044.330 kb on - strandat 2044.333 kb on + strandat 2044.333 kb on + strandat 2044.333 kb on + strandat 2044.333 kb on + strandat 2044.333 kb on + strandat 2044.334 kb on - strandat 2044.334 kb on - strandat 2044.334 kb on - strandat 2044.334 kb on - strandat 2044.334 kb on - strandat 2044.334 kb on - strandat 2044.338 kb on + strandat 2044.447 kb on - strandat 2044.527 kb on + strand, within CA264_08765at 2044.527 kb on + strand, within CA264_08765at 2044.527 kb on + strand, within CA264_08765at 2044.528 kb on - strand, within CA264_08765at 2044.534 kb on - strand, within CA264_08765at 2044.587 kb on + strand, within CA264_08765at 2044.588 kb on - strand, within CA264_08765at 2044.588 kb on - strand, within CA264_08765at 2044.615 kb on + strand, within CA264_08765at 2044.659 kb on + strand, within CA264_08765at 2044.688 kb on + strand, within CA264_08765at 2044.767 kb on + strand, within CA264_08765at 2044.768 kb on - strand, within CA264_08765at 2044.799 kb on + strand, within CA264_08765at 2044.803 kb on + strand, within CA264_08765at 2044.804 kb on - strand, within CA264_08765at 2044.819 kb on + strand, within CA264_08765at 2044.840 kb on - strand, within CA264_08765at 2044.847 kb on - strand, within CA264_08765at 2044.878 kb on + strand, within CA264_08765at 2044.882 kb on + strand, within CA264_08765at 2044.882 kb on + strand, within CA264_08765at 2044.883 kb on - strand, within CA264_08765at 2044.883 kb on - strand, within CA264_08765at 2044.892 kb on - strand, within CA264_08765at 2044.907 kb on - strand, within CA264_08765at 2044.907 kb on - strand, within CA264_08765at 2044.919 kb on - strand, within CA264_08765at 2044.919 kb on - strand, within CA264_08765at 2044.947 kb on - strand, within CA264_08765at 2044.982 kb on + strand, within CA264_08765at 2044.992 kb on + strand, within CA264_08765at 2045.084 kb on - strand, within CA264_08765at 2045.093 kb on + strand, within CA264_08765at 2045.253 kb on - strand, within CA264_08765at 2045.256 kb on + strand, within CA264_08765at 2045.264 kb on + strand, within CA264_08765at 2045.265 kb on - strand, within CA264_08765at 2045.362 kb on + strand, within CA264_08765at 2045.402 kb on - strand, within CA264_08765at 2045.402 kb on - strand, within CA264_08765at 2045.451 kb on - strand, within CA264_08765at 2045.460 kb on + strand, within CA264_08765at 2045.461 kb on - strand, within CA264_08765at 2045.466 kb on + strand, within CA264_08765at 2045.466 kb on + strand, within CA264_08765at 2045.491 kb on + strand, within CA264_08765at 2045.494 kb on + strand, within CA264_08765at 2045.538 kb on + strand, within CA264_08765at 2045.578 kb on - strand, within CA264_08765at 2045.578 kb on - strand, within CA264_08765at 2045.642 kb on + strand, within CA264_08765at 2045.643 kb on - strand, within CA264_08765at 2045.659 kb on - strand, within CA264_08765at 2045.693 kb on - strand, within CA264_08765at 2045.698 kb on + strand, within CA264_08765at 2045.698 kb on + strand, within CA264_08765at 2045.699 kb on - strand, within CA264_08765at 2045.703 kb on + strand, within CA264_08765at 2045.704 kb on - strand, within CA264_08765at 2045.739 kb on + strand, within CA264_08765at 2045.740 kb on - strand, within CA264_08765at 2045.758 kb on - strand, within CA264_08765at 2045.769 kb on + strand, within CA264_08765at 2045.782 kb on - strand, within CA264_08765at 2045.823 kb on + strandat 2045.823 kb on + strandat 2045.824 kb on - strandat 2045.825 kb on + strandat 2045.825 kb on + strandat 2045.837 kb on + strandat 2045.949 kb on + strandat 2045.950 kb on - strandat 2045.954 kb on - strandat 2045.977 kb on - strandat 2045.981 kb on + strandat 2045.989 kb on + strandat 2046.168 kb on + strandat 2046.199 kb on - strandat 2046.199 kb on - strandat 2046.200 kb on + strandat 2046.201 kb on - strandat 2046.272 kb on + strandat 2046.273 kb on - strandat 2046.273 kb on - strandat 2046.279 kb on + strandat 2046.279 kb on + strandat 2046.287 kb on + strand, within CA264_08770at 2046.287 kb on + strand, within CA264_08770at 2046.310 kb on + strand, within CA264_08770at 2046.311 kb on - strand, within CA264_08770at 2046.376 kb on + strand, within CA264_08770at 2046.449 kb on + strand, within CA264_08770at 2046.449 kb on + strand, within CA264_08770at 2046.550 kb on - strand, within CA264_08770at 2046.610 kb on + strand, within CA264_08770at 2046.630 kb on - strand, within CA264_08770at 2046.648 kb on + strand, within CA264_08770at 2046.688 kb on + strand, within CA264_08770at 2046.689 kb on - strand, within CA264_08770at 2046.698 kb on + strand, within CA264_08770at 2046.699 kb on - strand, within CA264_08770at 2046.699 kb on - strand, within CA264_08770at 2046.719 kb on + strand, within CA264_08770at 2046.720 kb on - strand, within CA264_08770at 2046.720 kb on - strand, within CA264_08770at 2046.772 kb on - strand, within CA264_08770at 2046.795 kb on + strand, within CA264_08770at 2046.796 kb on - strand, within CA264_08770at 2046.867 kb on + strand, within CA264_08770at 2046.901 kb on + strand, within CA264_08770at 2046.942 kb on + strand, within CA264_08770at 2046.947 kb on + strand, within CA264_08770at 2046.948 kb on - strand, within CA264_08770

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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2,043,415 + +0.1
2,043,551 + +0.8
2,043,551 + +1.0
2,043,644 + CA264_08760 0.14 +0.1
2,043,667 + CA264_08760 0.17 -1.9
2,043,682 - CA264_08760 0.19 -0.4
2,043,682 - CA264_08760 0.19 -0.9
2,043,682 - CA264_08760 0.19 -1.1
2,043,691 + CA264_08760 0.21 -0.5
2,043,692 - CA264_08760 0.21 +0.1
2,043,749 + CA264_08760 0.28 -0.2
2,043,853 + CA264_08760 0.42 +0.5
2,043,853 + CA264_08760 0.42 +0.2
2,043,854 - CA264_08760 0.42 +1.5
2,043,856 - CA264_08760 0.42 -0.1
2,043,860 + CA264_08760 0.43 -0.2
2,043,860 + CA264_08760 0.43 +1.1
2,043,861 - CA264_08760 0.43 -0.7
2,043,870 - CA264_08760 0.44 -0.8
2,043,882 - CA264_08760 0.46 -0.7
2,043,888 + CA264_08760 0.47 -1.9
2,043,888 + CA264_08760 0.47 +1.0
2,043,962 - CA264_08760 0.56 +1.0
2,044,033 - CA264_08760 0.66 -0.4
2,044,067 + CA264_08760 0.70 -0.4
2,044,067 + CA264_08760 0.70 +0.5
2,044,068 - CA264_08760 0.70 +1.0
2,044,068 - CA264_08760 0.70 -0.0
2,044,094 - CA264_08760 0.74 +1.1
2,044,096 + CA264_08760 0.74 +0.6
2,044,117 + CA264_08760 0.77 +1.4
2,044,131 + CA264_08760 0.79 +1.3
2,044,132 - CA264_08760 0.79 -0.2
2,044,132 - CA264_08760 0.79 +0.4
2,044,178 - CA264_08760 0.85 +1.9
2,044,179 + CA264_08760 0.85 -1.9
2,044,189 + CA264_08760 0.86 -0.0
2,044,189 + CA264_08760 0.86 -0.3
2,044,282 + +1.1
2,044,295 + -0.1
2,044,305 + +0.2
2,044,305 + -1.7
2,044,316 - -0.2
2,044,329 + -1.8
2,044,329 + -1.2
2,044,330 - -1.3
2,044,333 + +0.1
2,044,333 + -0.1
2,044,333 + +0.8
2,044,333 + +0.8
2,044,333 + +0.6
2,044,334 - +0.6
2,044,334 - +0.4
2,044,334 - -0.7
2,044,334 - +0.1
2,044,334 - -0.1
2,044,334 - +2.0
2,044,338 + +1.0
2,044,447 - +1.3
2,044,527 + CA264_08765 0.13 -0.7
2,044,527 + CA264_08765 0.13 -0.9
2,044,527 + CA264_08765 0.13 +0.2
2,044,528 - CA264_08765 0.13 +0.4
2,044,534 - CA264_08765 0.14 +0.0
2,044,587 + CA264_08765 0.17 +0.4
2,044,588 - CA264_08765 0.17 +1.1
2,044,588 - CA264_08765 0.17 +0.1
2,044,615 + CA264_08765 0.19 +0.0
2,044,659 + CA264_08765 0.21 -1.1
2,044,688 + CA264_08765 0.23 +0.0
2,044,767 + CA264_08765 0.28 -1.2
2,044,768 - CA264_08765 0.28 -1.1
2,044,799 + CA264_08765 0.30 +0.4
2,044,803 + CA264_08765 0.30 +2.2
2,044,804 - CA264_08765 0.30 +0.8
2,044,819 + CA264_08765 0.31 -0.5
2,044,840 - CA264_08765 0.32 -0.5
2,044,847 - CA264_08765 0.33 -0.2
2,044,878 + CA264_08765 0.34 -0.1
2,044,882 + CA264_08765 0.35 -1.1
2,044,882 + CA264_08765 0.35 -0.7
2,044,883 - CA264_08765 0.35 -0.0
2,044,883 - CA264_08765 0.35 -0.7
2,044,892 - CA264_08765 0.35 -2.4
2,044,907 - CA264_08765 0.36 +0.9
2,044,907 - CA264_08765 0.36 +0.0
2,044,919 - CA264_08765 0.37 +0.3
2,044,919 - CA264_08765 0.37 -0.4
2,044,947 - CA264_08765 0.39 -1.1
2,044,982 + CA264_08765 0.41 +0.7
2,044,992 + CA264_08765 0.41 -0.6
2,045,084 - CA264_08765 0.47 +0.0
2,045,093 + CA264_08765 0.47 -1.2
2,045,253 - CA264_08765 0.57 -0.8
2,045,256 + CA264_08765 0.57 -0.1
2,045,264 + CA264_08765 0.58 -0.1
2,045,265 - CA264_08765 0.58 -1.0
2,045,362 + CA264_08765 0.64 +0.1
2,045,402 - CA264_08765 0.66 +0.2
2,045,402 - CA264_08765 0.66 -0.3
2,045,451 - CA264_08765 0.69 -1.3
2,045,460 + CA264_08765 0.69 -0.4
2,045,461 - CA264_08765 0.69 +1.2
2,045,466 + CA264_08765 0.70 -0.2
2,045,466 + CA264_08765 0.70 +0.0
2,045,491 + CA264_08765 0.71 +0.4
2,045,494 + CA264_08765 0.71 -1.9
2,045,538 + CA264_08765 0.74 +0.1
2,045,578 - CA264_08765 0.77 -1.9
2,045,578 - CA264_08765 0.77 -1.0
2,045,642 + CA264_08765 0.80 -0.6
2,045,643 - CA264_08765 0.80 -0.6
2,045,659 - CA264_08765 0.81 -0.3
2,045,693 - CA264_08765 0.83 -0.3
2,045,698 + CA264_08765 0.84 -0.3
2,045,698 + CA264_08765 0.84 +0.9
2,045,699 - CA264_08765 0.84 -0.6
2,045,703 + CA264_08765 0.84 +0.0
2,045,704 - CA264_08765 0.84 -0.3
2,045,739 + CA264_08765 0.86 +0.8
2,045,740 - CA264_08765 0.86 -0.2
2,045,758 - CA264_08765 0.87 +1.6
2,045,769 + CA264_08765 0.88 +1.3
2,045,782 - CA264_08765 0.89 +0.0
2,045,823 + -0.7
2,045,823 + -2.5
2,045,824 - -0.6
2,045,825 + +0.6
2,045,825 + -1.1
2,045,837 + -0.6
2,045,949 + +0.8
2,045,950 - +0.2
2,045,954 - -0.9
2,045,977 - -0.6
2,045,981 + -0.1
2,045,989 + -0.6
2,046,168 + -0.5
2,046,199 - -2.4
2,046,199 - +0.1
2,046,200 + +0.2
2,046,201 - -0.9
2,046,272 + -0.5
2,046,273 - -0.7
2,046,273 - -2.4
2,046,279 + -0.6
2,046,279 + -1.3
2,046,287 + CA264_08770 0.10 -0.9
2,046,287 + CA264_08770 0.10 -0.0
2,046,310 + CA264_08770 0.11 -0.1
2,046,311 - CA264_08770 0.11 -1.0
2,046,376 + CA264_08770 0.13 +0.3
2,046,449 + CA264_08770 0.15 -0.9
2,046,449 + CA264_08770 0.15 +0.6
2,046,550 - CA264_08770 0.19 -0.7
2,046,610 + CA264_08770 0.21 -0.3
2,046,630 - CA264_08770 0.21 -0.7
2,046,648 + CA264_08770 0.22 +0.6
2,046,688 + CA264_08770 0.23 -0.7
2,046,689 - CA264_08770 0.23 -0.7
2,046,698 + CA264_08770 0.24 -0.4
2,046,699 - CA264_08770 0.24 +0.3
2,046,699 - CA264_08770 0.24 +0.4
2,046,719 + CA264_08770 0.24 -2.3
2,046,720 - CA264_08770 0.24 -1.2
2,046,720 - CA264_08770 0.24 -0.9
2,046,772 - CA264_08770 0.26 +0.1
2,046,795 + CA264_08770 0.27 +0.7
2,046,796 - CA264_08770 0.27 -1.7
2,046,867 + CA264_08770 0.29 -0.3
2,046,901 + CA264_08770 0.30 -3.2
2,046,942 + CA264_08770 0.32 +0.5
2,046,947 + CA264_08770 0.32 -0.2
2,046,948 - CA264_08770 0.32 +0.6

Or see this region's nucleotide sequence