Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08725

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08720 and CA264_08725 overlap by 8 nucleotidesCA264_08725 and CA264_08730 are separated by 25 nucleotides CA264_08720: CA264_08720 - RND transporter, at 2,028,262 to 2,029,695 _08720 CA264_08725: CA264_08725 - hydrophobe/amphiphile efflux-1 family RND transporter, at 2,029,688 to 2,032,855 _08725 CA264_08730: CA264_08730 - efflux transporter periplasmic adaptor subunit, at 2,032,881 to 2,033,963 _08730 Position (kb) 2029 2030 2031 2032 2033Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2028.755 kb on - strand, within CA264_08720at 2028.832 kb on - strand, within CA264_08720at 2028.832 kb on - strand, within CA264_08720at 2028.842 kb on - strand, within CA264_08720at 2028.952 kb on + strand, within CA264_08720at 2028.952 kb on + strand, within CA264_08720at 2028.952 kb on + strand, within CA264_08720at 2028.953 kb on - strand, within CA264_08720at 2028.959 kb on + strand, within CA264_08720at 2028.960 kb on - strand, within CA264_08720at 2029.046 kb on - strand, within CA264_08720at 2029.125 kb on - strand, within CA264_08720at 2029.128 kb on - strand, within CA264_08720at 2029.128 kb on - strand, within CA264_08720at 2029.194 kb on - strand, within CA264_08720at 2029.259 kb on + strand, within CA264_08720at 2029.260 kb on - strand, within CA264_08720at 2029.260 kb on - strand, within CA264_08720at 2029.312 kb on + strand, within CA264_08720at 2029.313 kb on - strand, within CA264_08720at 2029.339 kb on + strand, within CA264_08720at 2029.403 kb on + strand, within CA264_08720at 2029.404 kb on - strand, within CA264_08720at 2029.423 kb on + strand, within CA264_08720at 2029.495 kb on + strand, within CA264_08720at 2029.495 kb on + strand, within CA264_08720at 2029.496 kb on - strand, within CA264_08720at 2029.527 kb on - strand, within CA264_08720at 2029.589 kb on - strandat 2029.589 kb on - strandat 2029.589 kb on - strandat 2029.674 kb on + strandat 2029.674 kb on + strandat 2029.674 kb on + strandat 2029.675 kb on - strandat 2029.675 kb on - strandat 2029.675 kb on - strandat 2029.676 kb on + strandat 2029.679 kb on - strandat 2029.679 kb on - strandat 2029.689 kb on + strandat 2029.707 kb on + strandat 2029.707 kb on + strandat 2029.708 kb on - strandat 2029.708 kb on - strandat 2029.775 kb on + strandat 2029.775 kb on + strandat 2029.779 kb on + strandat 2029.780 kb on - strandat 2029.782 kb on + strandat 2029.867 kb on + strandat 2029.979 kb on + strandat 2029.979 kb on + strandat 2029.980 kb on - strandat 2030.018 kb on + strand, within CA264_08725at 2030.019 kb on - strand, within CA264_08725at 2030.019 kb on - strand, within CA264_08725at 2030.080 kb on - strand, within CA264_08725at 2030.080 kb on - strand, within CA264_08725at 2030.170 kb on + strand, within CA264_08725at 2030.170 kb on + strand, within CA264_08725at 2030.232 kb on + strand, within CA264_08725at 2030.266 kb on - strand, within CA264_08725at 2030.266 kb on - strand, within CA264_08725at 2030.353 kb on + strand, within CA264_08725at 2030.354 kb on - strand, within CA264_08725at 2030.355 kb on + strand, within CA264_08725at 2030.355 kb on + strand, within CA264_08725at 2030.355 kb on + strand, within CA264_08725at 2030.378 kb on + strand, within CA264_08725at 2030.380 kb on + strand, within CA264_08725at 2030.394 kb on + strand, within CA264_08725at 2030.394 kb on + strand, within CA264_08725at 2030.395 kb on - strand, within CA264_08725at 2030.457 kb on + strand, within CA264_08725at 2030.491 kb on - strand, within CA264_08725at 2030.499 kb on - strand, within CA264_08725at 2030.499 kb on - strand, within CA264_08725at 2030.500 kb on - strand, within CA264_08725at 2030.528 kb on - strand, within CA264_08725at 2030.544 kb on + strand, within CA264_08725at 2030.544 kb on + strand, within CA264_08725at 2030.547 kb on - strand, within CA264_08725at 2030.547 kb on - strand, within CA264_08725at 2030.586 kb on + strand, within CA264_08725at 2030.586 kb on + strand, within CA264_08725at 2030.587 kb on - strand, within CA264_08725at 2030.594 kb on - strand, within CA264_08725at 2030.594 kb on - strand, within CA264_08725at 2030.666 kb on + strand, within CA264_08725at 2030.708 kb on - strand, within CA264_08725at 2030.728 kb on + strand, within CA264_08725at 2030.782 kb on - strand, within CA264_08725at 2030.800 kb on + strand, within CA264_08725at 2031.101 kb on - strand, within CA264_08725at 2031.187 kb on - strand, within CA264_08725at 2031.187 kb on - strand, within CA264_08725at 2031.187 kb on - strand, within CA264_08725at 2031.188 kb on + strand, within CA264_08725at 2031.188 kb on + strand, within CA264_08725at 2031.189 kb on - strand, within CA264_08725at 2031.191 kb on + strand, within CA264_08725at 2031.191 kb on + strand, within CA264_08725at 2031.191 kb on + strand, within CA264_08725at 2031.192 kb on - strand, within CA264_08725at 2031.192 kb on - strand, within CA264_08725at 2031.192 kb on - strand, within CA264_08725at 2031.192 kb on - strand, within CA264_08725at 2031.248 kb on - strand, within CA264_08725at 2031.254 kb on - strand, within CA264_08725at 2031.254 kb on - strand, within CA264_08725at 2031.254 kb on - strand, within CA264_08725at 2031.254 kb on - strand, within CA264_08725at 2031.268 kb on - strand, within CA264_08725at 2031.434 kb on - strand, within CA264_08725at 2031.506 kb on + strand, within CA264_08725at 2031.526 kb on + strand, within CA264_08725at 2031.568 kb on - strand, within CA264_08725at 2031.598 kb on + strand, within CA264_08725at 2031.643 kb on + strand, within CA264_08725at 2031.656 kb on + strand, within CA264_08725at 2031.807 kb on - strand, within CA264_08725at 2031.807 kb on - strand, within CA264_08725at 2031.808 kb on + strand, within CA264_08725at 2031.808 kb on + strand, within CA264_08725at 2031.808 kb on + strand, within CA264_08725at 2031.843 kb on - strand, within CA264_08725at 2031.844 kb on + strand, within CA264_08725at 2031.844 kb on + strand, within CA264_08725at 2031.844 kb on + strand, within CA264_08725at 2031.844 kb on + strand, within CA264_08725at 2031.845 kb on - strand, within CA264_08725at 2031.874 kb on - strand, within CA264_08725at 2031.948 kb on - strand, within CA264_08725at 2031.948 kb on - strand, within CA264_08725at 2032.020 kb on + strand, within CA264_08725at 2032.020 kb on + strand, within CA264_08725at 2032.020 kb on + strand, within CA264_08725at 2032.020 kb on + strand, within CA264_08725at 2032.021 kb on - strand, within CA264_08725at 2032.024 kb on + strand, within CA264_08725at 2032.024 kb on + strand, within CA264_08725at 2032.024 kb on + strand, within CA264_08725at 2032.025 kb on - strand, within CA264_08725at 2032.050 kb on - strand, within CA264_08725at 2032.073 kb on + strand, within CA264_08725at 2032.073 kb on + strand, within CA264_08725at 2032.074 kb on - strand, within CA264_08725at 2032.074 kb on - strand, within CA264_08725at 2032.074 kb on - strand, within CA264_08725at 2032.108 kb on + strand, within CA264_08725at 2032.108 kb on + strand, within CA264_08725at 2032.146 kb on + strand, within CA264_08725at 2032.147 kb on - strand, within CA264_08725at 2032.150 kb on + strand, within CA264_08725at 2032.159 kb on - strand, within CA264_08725at 2032.178 kb on + strand, within CA264_08725at 2032.296 kb on - strand, within CA264_08725at 2032.318 kb on + strand, within CA264_08725at 2032.424 kb on - strand, within CA264_08725at 2032.440 kb on + strand, within CA264_08725at 2032.450 kb on + strand, within CA264_08725at 2032.450 kb on + strand, within CA264_08725at 2032.451 kb on - strand, within CA264_08725at 2032.451 kb on - strand, within CA264_08725at 2032.625 kb on - strandat 2032.652 kb on - strandat 2032.762 kb on + strandat 2032.763 kb on - strandat 2032.790 kb on + strandat 2032.791 kb on - strandat 2032.846 kb on + strandat 2032.849 kb on + strandat 2032.882 kb on + strandat 2032.891 kb on + strandat 2032.892 kb on - strandat 2032.893 kb on + strandat 2032.893 kb on + strandat 2032.989 kb on - strandat 2033.013 kb on + strand, within CA264_08730at 2033.021 kb on - strand, within CA264_08730at 2033.063 kb on + strand, within CA264_08730at 2033.063 kb on + strand, within CA264_08730at 2033.064 kb on - strand, within CA264_08730at 2033.089 kb on + strand, within CA264_08730at 2033.089 kb on + strand, within CA264_08730at 2033.090 kb on - strand, within CA264_08730at 2033.090 kb on - strand, within CA264_08730at 2033.090 kb on - strand, within CA264_08730at 2033.095 kb on + strand, within CA264_08730at 2033.095 kb on + strand, within CA264_08730at 2033.095 kb on + strand, within CA264_08730at 2033.095 kb on + strand, within CA264_08730at 2033.095 kb on + strand, within CA264_08730at 2033.095 kb on + strand, within CA264_08730at 2033.096 kb on - strand, within CA264_08730at 2033.096 kb on - strand, within CA264_08730at 2033.096 kb on - strand, within CA264_08730at 2033.096 kb on - strand, within CA264_08730at 2033.389 kb on + strand, within CA264_08730at 2033.390 kb on - strand, within CA264_08730at 2033.390 kb on - strand, within CA264_08730at 2033.392 kb on + strand, within CA264_08730at 2033.463 kb on + strand, within CA264_08730at 2033.464 kb on - strand, within CA264_08730at 2033.686 kb on + strand, within CA264_08730at 2033.764 kb on + strand, within CA264_08730at 2033.793 kb on - strand, within CA264_08730at 2033.799 kb on + strand, within CA264_08730at 2033.801 kb on + strand, within CA264_08730at 2033.802 kb on - strand, within CA264_08730at 2033.818 kb on - strand, within CA264_08730

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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2,028,755 - CA264_08720 0.34 +1.0
2,028,832 - CA264_08720 0.40 -2.8
2,028,832 - CA264_08720 0.40 -1.2
2,028,842 - CA264_08720 0.40 -0.4
2,028,952 + CA264_08720 0.48 -0.6
2,028,952 + CA264_08720 0.48 -2.3
2,028,952 + CA264_08720 0.48 +0.0
2,028,953 - CA264_08720 0.48 -1.4
2,028,959 + CA264_08720 0.49 -0.9
2,028,960 - CA264_08720 0.49 +0.3
2,029,046 - CA264_08720 0.55 -0.1
2,029,125 - CA264_08720 0.60 -0.1
2,029,128 - CA264_08720 0.60 +1.0
2,029,128 - CA264_08720 0.60 -0.4
2,029,194 - CA264_08720 0.65 +0.8
2,029,259 + CA264_08720 0.70 -0.1
2,029,260 - CA264_08720 0.70 -0.2
2,029,260 - CA264_08720 0.70 -1.7
2,029,312 + CA264_08720 0.73 -0.3
2,029,313 - CA264_08720 0.73 -0.3
2,029,339 + CA264_08720 0.75 +0.6
2,029,403 + CA264_08720 0.80 +0.2
2,029,404 - CA264_08720 0.80 -0.2
2,029,423 + CA264_08720 0.81 -1.7
2,029,495 + CA264_08720 0.86 -1.4
2,029,495 + CA264_08720 0.86 +0.2
2,029,496 - CA264_08720 0.86 +0.0
2,029,527 - CA264_08720 0.88 +0.4
2,029,589 - +0.2
2,029,589 - +0.2
2,029,589 - -1.5
2,029,674 + -0.4
2,029,674 + -0.1
2,029,674 + +0.6
2,029,675 - -0.7
2,029,675 - +0.3
2,029,675 - +0.0
2,029,676 + -1.0
2,029,679 - +0.5
2,029,679 - -0.4
2,029,689 + -0.1
2,029,707 + -0.5
2,029,707 + -0.5
2,029,708 - -1.0
2,029,708 - -0.6
2,029,775 + +2.6
2,029,775 + +0.2
2,029,779 + -0.8
2,029,780 - +0.2
2,029,782 + +1.2
2,029,867 + +1.6
2,029,979 + -0.4
2,029,979 + +0.7
2,029,980 - +0.2
2,030,018 + CA264_08725 0.10 -1.4
2,030,019 - CA264_08725 0.10 -0.2
2,030,019 - CA264_08725 0.10 -0.9
2,030,080 - CA264_08725 0.12 -0.1
2,030,080 - CA264_08725 0.12 +1.5
2,030,170 + CA264_08725 0.15 +0.3
2,030,170 + CA264_08725 0.15 -0.1
2,030,232 + CA264_08725 0.17 -0.1
2,030,266 - CA264_08725 0.18 -1.1
2,030,266 - CA264_08725 0.18 -0.8
2,030,353 + CA264_08725 0.21 -1.0
2,030,354 - CA264_08725 0.21 +0.2
2,030,355 + CA264_08725 0.21 -1.1
2,030,355 + CA264_08725 0.21 -0.2
2,030,355 + CA264_08725 0.21 -0.3
2,030,378 + CA264_08725 0.22 -0.0
2,030,380 + CA264_08725 0.22 -0.3
2,030,394 + CA264_08725 0.22 -0.1
2,030,394 + CA264_08725 0.22 +0.9
2,030,395 - CA264_08725 0.22 +1.1
2,030,457 + CA264_08725 0.24 -0.3
2,030,491 - CA264_08725 0.25 -0.6
2,030,499 - CA264_08725 0.26 -0.7
2,030,499 - CA264_08725 0.26 +1.4
2,030,500 - CA264_08725 0.26 +1.2
2,030,528 - CA264_08725 0.27 +0.7
2,030,544 + CA264_08725 0.27 -1.5
2,030,544 + CA264_08725 0.27 -0.2
2,030,547 - CA264_08725 0.27 +0.3
2,030,547 - CA264_08725 0.27 -0.1
2,030,586 + CA264_08725 0.28 +0.1
2,030,586 + CA264_08725 0.28 -2.1
2,030,587 - CA264_08725 0.28 +2.1
2,030,594 - CA264_08725 0.29 -0.2
2,030,594 - CA264_08725 0.29 -1.9
2,030,666 + CA264_08725 0.31 -1.3
2,030,708 - CA264_08725 0.32 -0.7
2,030,728 + CA264_08725 0.33 +0.1
2,030,782 - CA264_08725 0.35 +0.5
2,030,800 + CA264_08725 0.35 +0.0
2,031,101 - CA264_08725 0.45 -1.1
2,031,187 - CA264_08725 0.47 -1.0
2,031,187 - CA264_08725 0.47 -0.7
2,031,187 - CA264_08725 0.47 -1.4
2,031,188 + CA264_08725 0.47 -0.1
2,031,188 + CA264_08725 0.47 +1.4
2,031,189 - CA264_08725 0.47 +0.6
2,031,191 + CA264_08725 0.47 -0.2
2,031,191 + CA264_08725 0.47 -0.1
2,031,191 + CA264_08725 0.47 -0.1
2,031,192 - CA264_08725 0.47 -1.4
2,031,192 - CA264_08725 0.47 -0.4
2,031,192 - CA264_08725 0.47 -0.0
2,031,192 - CA264_08725 0.47 -0.9
2,031,248 - CA264_08725 0.49 -0.1
2,031,254 - CA264_08725 0.49 -0.4
2,031,254 - CA264_08725 0.49 -1.1
2,031,254 - CA264_08725 0.49 -0.4
2,031,254 - CA264_08725 0.49 -0.3
2,031,268 - CA264_08725 0.50 -0.4
2,031,434 - CA264_08725 0.55 +0.5
2,031,506 + CA264_08725 0.57 -0.3
2,031,526 + CA264_08725 0.58 -0.4
2,031,568 - CA264_08725 0.59 -0.4
2,031,598 + CA264_08725 0.60 +0.1
2,031,643 + CA264_08725 0.62 +1.7
2,031,656 + CA264_08725 0.62 -0.7
2,031,807 - CA264_08725 0.67 -1.0
2,031,807 - CA264_08725 0.67 -1.5
2,031,808 + CA264_08725 0.67 -0.3
2,031,808 + CA264_08725 0.67 -0.7
2,031,808 + CA264_08725 0.67 +0.2
2,031,843 - CA264_08725 0.68 -0.2
2,031,844 + CA264_08725 0.68 +0.2
2,031,844 + CA264_08725 0.68 +0.2
2,031,844 + CA264_08725 0.68 +0.2
2,031,844 + CA264_08725 0.68 +0.2
2,031,845 - CA264_08725 0.68 -0.1
2,031,874 - CA264_08725 0.69 -0.5
2,031,948 - CA264_08725 0.71 +0.4
2,031,948 - CA264_08725 0.71 -0.7
2,032,020 + CA264_08725 0.74 +0.4
2,032,020 + CA264_08725 0.74 +0.9
2,032,020 + CA264_08725 0.74 +0.1
2,032,020 + CA264_08725 0.74 -0.3
2,032,021 - CA264_08725 0.74 -0.1
2,032,024 + CA264_08725 0.74 -0.6
2,032,024 + CA264_08725 0.74 -0.6
2,032,024 + CA264_08725 0.74 +3.2
2,032,025 - CA264_08725 0.74 +0.1
2,032,050 - CA264_08725 0.75 +0.3
2,032,073 + CA264_08725 0.75 -0.4
2,032,073 + CA264_08725 0.75 +0.1
2,032,074 - CA264_08725 0.75 -0.1
2,032,074 - CA264_08725 0.75 +0.5
2,032,074 - CA264_08725 0.75 +1.5
2,032,108 + CA264_08725 0.76 -0.2
2,032,108 + CA264_08725 0.76 -0.1
2,032,146 + CA264_08725 0.78 -0.6
2,032,147 - CA264_08725 0.78 +0.0
2,032,150 + CA264_08725 0.78 +0.1
2,032,159 - CA264_08725 0.78 -0.5
2,032,178 + CA264_08725 0.79 -0.3
2,032,296 - CA264_08725 0.82 -1.1
2,032,318 + CA264_08725 0.83 +2.8
2,032,424 - CA264_08725 0.86 +0.2
2,032,440 + CA264_08725 0.87 +2.0
2,032,450 + CA264_08725 0.87 -1.1
2,032,450 + CA264_08725 0.87 +0.1
2,032,451 - CA264_08725 0.87 -0.2
2,032,451 - CA264_08725 0.87 -0.3
2,032,625 - -0.8
2,032,652 - +1.0
2,032,762 + +0.3
2,032,763 - -0.2
2,032,790 + -1.1
2,032,791 - -1.9
2,032,846 + -0.6
2,032,849 + -0.8
2,032,882 + -0.5
2,032,891 + -1.5
2,032,892 - -1.2
2,032,893 + +0.8
2,032,893 + -0.4
2,032,989 - -0.5
2,033,013 + CA264_08730 0.12 -0.2
2,033,021 - CA264_08730 0.13 -1.3
2,033,063 + CA264_08730 0.17 +0.1
2,033,063 + CA264_08730 0.17 -0.2
2,033,064 - CA264_08730 0.17 -1.8
2,033,089 + CA264_08730 0.19 +1.3
2,033,089 + CA264_08730 0.19 +0.0
2,033,090 - CA264_08730 0.19 -0.5
2,033,090 - CA264_08730 0.19 +0.1
2,033,090 - CA264_08730 0.19 -0.7
2,033,095 + CA264_08730 0.20 +1.3
2,033,095 + CA264_08730 0.20 -1.1
2,033,095 + CA264_08730 0.20 +1.6
2,033,095 + CA264_08730 0.20 +1.0
2,033,095 + CA264_08730 0.20 -1.2
2,033,095 + CA264_08730 0.20 -0.3
2,033,096 - CA264_08730 0.20 +0.4
2,033,096 - CA264_08730 0.20 +0.4
2,033,096 - CA264_08730 0.20 +1.1
2,033,096 - CA264_08730 0.20 -0.2
2,033,389 + CA264_08730 0.47 +0.3
2,033,390 - CA264_08730 0.47 -0.3
2,033,390 - CA264_08730 0.47 +0.8
2,033,392 + CA264_08730 0.47 -1.2
2,033,463 + CA264_08730 0.54 -0.1
2,033,464 - CA264_08730 0.54 +0.7
2,033,686 + CA264_08730 0.74 -0.4
2,033,764 + CA264_08730 0.82 -0.1
2,033,793 - CA264_08730 0.84 -0.5
2,033,799 + CA264_08730 0.85 -0.1
2,033,801 + CA264_08730 0.85 -0.5
2,033,802 - CA264_08730 0.85 +0.5
2,033,818 - CA264_08730 0.87 +0.5

Or see this region's nucleotide sequence