Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08270 and CA264_08275 are separated by 19 nucleotides CA264_08275 and CA264_08280 are separated by 0 nucleotides CA264_08280 and CA264_08285 are separated by 3 nucleotides
CA264_08270: CA264_08270 - Fe-S cluster assembly protein SufB, at 1,910,649 to 1,912,103
_08270
CA264_08275: CA264_08275 - ABC transporter ATP-binding protein, at 1,912,123 to 1,912,893
_08275
CA264_08280: CA264_08280 - Fe-S cluster assembly protein SufD, at 1,912,894 to 1,914,234
_08280
CA264_08285: CA264_08285 - aminotransferase, at 1,914,238 to 1,915,488
_08285
Position (kb)
1912
1913
1914
1915 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1911.908 kb on - strand, within CA264_08270 at 1911.908 kb on - strand, within CA264_08270 at 1911.973 kb on + strand at 1911.973 kb on + strand at 1911.974 kb on - strand at 1912.012 kb on - strand at 1912.073 kb on - strand at 1912.096 kb on + strand at 1912.097 kb on - strand at 1912.097 kb on - strand at 1912.097 kb on - strand at 1912.097 kb on - strand at 1912.104 kb on + strand at 1912.127 kb on + strand at 1912.154 kb on + strand at 1912.181 kb on + strand at 1912.181 kb on + strand at 1912.181 kb on + strand at 1912.208 kb on + strand, within CA264_08275 at 1912.280 kb on - strand, within CA264_08275 at 1912.280 kb on - strand, within CA264_08275 at 1912.281 kb on + strand, within CA264_08275 at 1912.281 kb on + strand, within CA264_08275 at 1912.286 kb on + strand, within CA264_08275 at 1912.286 kb on + strand, within CA264_08275 at 1912.343 kb on + strand, within CA264_08275 at 1912.406 kb on - strand, within CA264_08275 at 1912.440 kb on - strand, within CA264_08275 at 1912.891 kb on + strand at 1912.891 kb on + strand at 1912.892 kb on - strand at 1912.892 kb on - strand at 1912.911 kb on + strand at 1912.914 kb on - strand at 1912.914 kb on - strand at 1912.989 kb on - strand at 1912.997 kb on + strand at 1913.066 kb on - strand, within CA264_08280 at 1913.067 kb on + strand, within CA264_08280 at 1913.068 kb on - strand, within CA264_08280 at 1913.177 kb on - strand, within CA264_08280 at 1913.256 kb on + strand, within CA264_08280 at 1913.294 kb on - strand, within CA264_08280 at 1913.294 kb on - strand, within CA264_08280 at 1913.302 kb on - strand, within CA264_08280 at 1913.307 kb on - strand, within CA264_08280 at 1913.401 kb on - strand, within CA264_08280 at 1913.561 kb on + strand, within CA264_08280 at 1913.593 kb on + strand, within CA264_08280 at 1913.594 kb on - strand, within CA264_08280 at 1913.630 kb on + strand, within CA264_08280 at 1913.631 kb on - strand, within CA264_08280 at 1913.668 kb on + strand, within CA264_08280 at 1913.678 kb on - strand, within CA264_08280 at 1913.678 kb on - strand, within CA264_08280 at 1913.678 kb on - strand, within CA264_08280 at 1913.727 kb on - strand, within CA264_08280 at 1913.727 kb on - strand, within CA264_08280 at 1913.761 kb on + strand, within CA264_08280 at 1913.805 kb on + strand, within CA264_08280 at 1913.805 kb on + strand, within CA264_08280 at 1913.806 kb on - strand, within CA264_08280 at 1913.806 kb on - strand, within CA264_08280 at 1913.890 kb on - strand, within CA264_08280 at 1913.890 kb on - strand, within CA264_08280 at 1914.005 kb on - strand, within CA264_08280 at 1914.100 kb on - strand, within CA264_08280 at 1914.201 kb on + strand at 1914.202 kb on - strand at 1914.202 kb on - strand at 1914.203 kb on + strand at 1914.203 kb on + strand at 1914.203 kb on + strand at 1914.204 kb on - strand at 1914.204 kb on - strand at 1914.204 kb on - strand at 1914.230 kb on + strand at 1914.231 kb on - strand at 1914.232 kb on + strand at 1914.280 kb on - strand at 1914.404 kb on - strand, within CA264_08285 at 1914.404 kb on - strand, within CA264_08285 at 1914.415 kb on + strand, within CA264_08285 at 1914.415 kb on + strand, within CA264_08285 at 1914.537 kb on + strand, within CA264_08285 at 1914.781 kb on + strand, within CA264_08285 at 1914.781 kb on + strand, within CA264_08285 at 1914.781 kb on + strand, within CA264_08285 at 1914.782 kb on - strand, within CA264_08285 at 1914.782 kb on - strand, within CA264_08285 at 1914.786 kb on - strand, within CA264_08285 at 1914.896 kb on + strand, within CA264_08285 at 1914.896 kb on + strand, within CA264_08285 at 1914.902 kb on + strand, within CA264_08285 at 1914.902 kb on + strand, within CA264_08285 at 1914.903 kb on - strand, within CA264_08285 at 1914.949 kb on + strand, within CA264_08285 at 1915.063 kb on + strand, within CA264_08285 at 1915.064 kb on - strand, within CA264_08285 at 1915.065 kb on + strand, within CA264_08285 at 1915.199 kb on - strand, within CA264_08285
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 1,911,908 - CA264_08270 0.87 -0.1 1,911,908 - CA264_08270 0.87 -0.5 1,911,973 + +0.3 1,911,973 + -0.4 1,911,974 - -0.0 1,912,012 - +0.0 1,912,073 - +0.3 1,912,096 + +0.8 1,912,097 - -0.2 1,912,097 - -0.4 1,912,097 - -0.6 1,912,097 - -0.7 1,912,104 + -0.0 1,912,127 + +0.5 1,912,154 + +0.3 1,912,181 + +0.7 1,912,181 + +0.5 1,912,181 + -0.6 1,912,208 + CA264_08275 0.11 +0.2 1,912,280 - CA264_08275 0.20 -0.2 1,912,280 - CA264_08275 0.20 +0.3 1,912,281 + CA264_08275 0.20 +1.7 1,912,281 + CA264_08275 0.20 +0.5 1,912,286 + CA264_08275 0.21 -0.4 1,912,286 + CA264_08275 0.21 +1.1 1,912,343 + CA264_08275 0.29 -0.2 1,912,406 - CA264_08275 0.37 -1.2 1,912,440 - CA264_08275 0.41 +0.3 1,912,891 + -0.0 1,912,891 + +0.2 1,912,892 - +0.9 1,912,892 - -0.1 1,912,911 + -0.5 1,912,914 - -0.1 1,912,914 - +0.3 1,912,989 - -0.1 1,912,997 + -0.1 1,913,066 - CA264_08280 0.13 -0.6 1,913,067 + CA264_08280 0.13 +2.3 1,913,068 - CA264_08280 0.13 -0.6 1,913,177 - CA264_08280 0.21 -0.6 1,913,256 + CA264_08280 0.27 +0.3 1,913,294 - CA264_08280 0.30 +1.5 1,913,294 - CA264_08280 0.30 +0.5 1,913,302 - CA264_08280 0.30 -0.8 1,913,307 - CA264_08280 0.31 -0.0 1,913,401 - CA264_08280 0.38 +0.3 1,913,561 + CA264_08280 0.50 +0.8 1,913,593 + CA264_08280 0.52 -2.9 1,913,594 - CA264_08280 0.52 +1.5 1,913,630 + CA264_08280 0.55 +0.0 1,913,631 - CA264_08280 0.55 +0.6 1,913,668 + CA264_08280 0.58 +0.4 1,913,678 - CA264_08280 0.58 +0.0 1,913,678 - CA264_08280 0.58 +1.3 1,913,678 - CA264_08280 0.58 -0.3 1,913,727 - CA264_08280 0.62 -0.1 1,913,727 - CA264_08280 0.62 +0.0 1,913,761 + CA264_08280 0.65 -1.4 1,913,805 + CA264_08280 0.68 +0.0 1,913,805 + CA264_08280 0.68 -0.6 1,913,806 - CA264_08280 0.68 +1.9 1,913,806 - CA264_08280 0.68 -0.9 1,913,890 - CA264_08280 0.74 +0.3 1,913,890 - CA264_08280 0.74 -0.9 1,914,005 - CA264_08280 0.83 -0.1 1,914,100 - CA264_08280 0.90 -0.0 1,914,201 + -1.8 1,914,202 - -1.0 1,914,202 - +0.3 1,914,203 + -0.5 1,914,203 + -0.7 1,914,203 + -1.1 1,914,204 - -1.5 1,914,204 - +2.0 1,914,204 - +1.4 1,914,230 + +0.8 1,914,231 - -0.3 1,914,232 + +1.0 1,914,280 - +0.4 1,914,404 - CA264_08285 0.13 -0.7 1,914,404 - CA264_08285 0.13 -1.1 1,914,415 + CA264_08285 0.14 +1.1 1,914,415 + CA264_08285 0.14 +0.3 1,914,537 + CA264_08285 0.24 -0.4 1,914,781 + CA264_08285 0.43 +1.8 1,914,781 + CA264_08285 0.43 +0.1 1,914,781 + CA264_08285 0.43 +1.0 1,914,782 - CA264_08285 0.43 +0.2 1,914,782 - CA264_08285 0.43 +0.1 1,914,786 - CA264_08285 0.44 +0.5 1,914,896 + CA264_08285 0.53 -0.1 1,914,896 + CA264_08285 0.53 -0.5 1,914,902 + CA264_08285 0.53 -1.4 1,914,902 + CA264_08285 0.53 -0.3 1,914,903 - CA264_08285 0.53 +0.1 1,914,949 + CA264_08285 0.57 +1.1 1,915,063 + CA264_08285 0.66 -1.0 1,915,064 - CA264_08285 0.66 +0.2 1,915,065 + CA264_08285 0.66 -0.1 1,915,199 - CA264_08285 0.77 +0.4
Or see this region's nucleotide sequence