Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07890 and CA264_07895 overlap by 4 nucleotides CA264_07895 and CA264_07900 are separated by 372 nucleotides CA264_07900 and CA264_07905 are separated by 155 nucleotides CA264_07905 and CA264_07910 are separated by 127 nucleotides
CA264_07890: CA264_07890 - hypothetical protein, at 1,826,132 to 1,826,725
_07890
CA264_07895: CA264_07895 - hypothetical protein, at 1,826,722 to 1,827,294
_07895
CA264_07900: CA264_07900 - hypothetical protein, at 1,827,667 to 1,828,047
_07900
CA264_07905: CA264_07905 - tRNA-specific adenosine deaminase, at 1,828,203 to 1,828,688
_07905
CA264_07910: CA264_07910 - HAMP domain-containing histidine kinase, at 1,828,816 to 1,830,330
_07910
Position (kb)
1827
1828
1829 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1826.723 kb on + strand at 1826.728 kb on - strand at 1826.731 kb on - strand at 1826.851 kb on + strand, within CA264_07895 at 1826.852 kb on - strand, within CA264_07895 at 1826.852 kb on - strand, within CA264_07895 at 1826.852 kb on - strand, within CA264_07895 at 1826.919 kb on + strand, within CA264_07895 at 1826.928 kb on + strand, within CA264_07895 at 1826.930 kb on + strand, within CA264_07895 at 1826.931 kb on - strand, within CA264_07895 at 1826.931 kb on - strand, within CA264_07895 at 1827.078 kb on - strand, within CA264_07895 at 1827.141 kb on + strand, within CA264_07895 at 1827.178 kb on - strand, within CA264_07895 at 1827.187 kb on + strand, within CA264_07895 at 1827.295 kb on + strand at 1827.295 kb on + strand at 1827.330 kb on + strand at 1827.331 kb on - strand at 1827.350 kb on + strand at 1827.363 kb on - strand at 1827.389 kb on - strand at 1827.422 kb on - strand at 1827.448 kb on - strand at 1827.480 kb on + strand at 1827.503 kb on + strand at 1827.513 kb on - strand at 1827.529 kb on - strand at 1827.546 kb on + strand at 1827.546 kb on + strand at 1827.547 kb on - strand at 1827.552 kb on + strand at 1827.553 kb on - strand at 1827.553 kb on - strand at 1827.557 kb on - strand at 1827.606 kb on - strand at 1827.647 kb on + strand at 1827.647 kb on + strand at 1827.647 kb on + strand at 1827.647 kb on + strand at 1827.648 kb on - strand at 1827.649 kb on + strand at 1827.650 kb on - strand at 1827.693 kb on - strand at 1827.693 kb on - strand at 1827.739 kb on - strand, within CA264_07900 at 1827.772 kb on - strand, within CA264_07900 at 1827.780 kb on + strand, within CA264_07900 at 1827.780 kb on + strand, within CA264_07900 at 1827.781 kb on - strand, within CA264_07900 at 1827.781 kb on - strand, within CA264_07900 at 1827.781 kb on - strand, within CA264_07900 at 1827.781 kb on - strand, within CA264_07900 at 1828.061 kb on - strand at 1828.128 kb on + strand at 1828.150 kb on + strand at 1828.155 kb on - strand at 1828.161 kb on + strand at 1828.306 kb on + strand, within CA264_07905 at 1828.307 kb on - strand, within CA264_07905 at 1828.328 kb on - strand, within CA264_07905 at 1828.446 kb on + strand, within CA264_07905 at 1828.447 kb on - strand, within CA264_07905 at 1828.488 kb on + strand, within CA264_07905 at 1828.488 kb on + strand, within CA264_07905 at 1828.510 kb on + strand, within CA264_07905 at 1828.510 kb on + strand, within CA264_07905 at 1828.510 kb on + strand, within CA264_07905 at 1828.511 kb on - strand, within CA264_07905 at 1828.511 kb on - strand, within CA264_07905 at 1828.511 kb on - strand, within CA264_07905 at 1828.512 kb on + strand, within CA264_07905 at 1828.512 kb on + strand, within CA264_07905 at 1828.512 kb on + strand, within CA264_07905 at 1828.513 kb on - strand, within CA264_07905 at 1828.516 kb on - strand, within CA264_07905 at 1828.566 kb on - strand, within CA264_07905 at 1828.621 kb on + strand, within CA264_07905 at 1828.708 kb on + strand at 1828.709 kb on - strand at 1828.734 kb on - strand at 1828.815 kb on + strand at 1828.815 kb on + strand at 1828.815 kb on + strand at 1828.838 kb on - strand at 1828.862 kb on + strand at 1828.891 kb on - strand at 1828.908 kb on - strand at 1828.908 kb on - strand at 1828.923 kb on + strand at 1828.949 kb on + strand at 1828.949 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 1,826,723 + -0.6 1,826,728 - -0.6 1,826,731 - -1.7 1,826,851 + CA264_07895 0.23 +0.1 1,826,852 - CA264_07895 0.23 +1.3 1,826,852 - CA264_07895 0.23 -0.4 1,826,852 - CA264_07895 0.23 +0.3 1,826,919 + CA264_07895 0.34 -1.0 1,826,928 + CA264_07895 0.36 +0.3 1,826,930 + CA264_07895 0.36 +0.6 1,826,931 - CA264_07895 0.36 -0.3 1,826,931 - CA264_07895 0.36 -1.9 1,827,078 - CA264_07895 0.62 -2.2 1,827,141 + CA264_07895 0.73 -0.4 1,827,178 - CA264_07895 0.80 -0.7 1,827,187 + CA264_07895 0.81 -0.6 1,827,295 + -1.0 1,827,295 + -1.1 1,827,330 + +1.1 1,827,331 - +0.8 1,827,350 + +0.5 1,827,363 - -0.2 1,827,389 - -0.9 1,827,422 - -0.6 1,827,448 - -0.7 1,827,480 + -1.8 1,827,503 + -0.1 1,827,513 - -0.8 1,827,529 - +2.2 1,827,546 + +0.2 1,827,546 + -1.0 1,827,547 - -0.6 1,827,552 + +1.7 1,827,553 - +0.6 1,827,553 - -0.6 1,827,557 - +2.8 1,827,606 - +1.0 1,827,647 + -0.1 1,827,647 + -0.1 1,827,647 + -0.9 1,827,647 + +0.2 1,827,648 - -0.3 1,827,649 + +0.0 1,827,650 - +0.3 1,827,693 - +0.4 1,827,693 - +0.1 1,827,739 - CA264_07900 0.19 -1.0 1,827,772 - CA264_07900 0.28 -0.1 1,827,780 + CA264_07900 0.30 +1.7 1,827,780 + CA264_07900 0.30 -2.0 1,827,781 - CA264_07900 0.30 -1.4 1,827,781 - CA264_07900 0.30 +0.1 1,827,781 - CA264_07900 0.30 +0.1 1,827,781 - CA264_07900 0.30 -1.8 1,828,061 - +0.5 1,828,128 + +0.6 1,828,150 + +0.3 1,828,155 - -0.2 1,828,161 + +0.5 1,828,306 + CA264_07905 0.21 -0.2 1,828,307 - CA264_07905 0.21 -0.9 1,828,328 - CA264_07905 0.26 -0.0 1,828,446 + CA264_07905 0.50 +0.2 1,828,447 - CA264_07905 0.50 +0.0 1,828,488 + CA264_07905 0.59 +0.1 1,828,488 + CA264_07905 0.59 -0.1 1,828,510 + CA264_07905 0.63 -0.2 1,828,510 + CA264_07905 0.63 +0.1 1,828,510 + CA264_07905 0.63 +0.5 1,828,511 - CA264_07905 0.63 +0.6 1,828,511 - CA264_07905 0.63 -1.4 1,828,511 - CA264_07905 0.63 +1.8 1,828,512 + CA264_07905 0.64 -1.0 1,828,512 + CA264_07905 0.64 -0.2 1,828,512 + CA264_07905 0.64 +0.3 1,828,513 - CA264_07905 0.64 -0.6 1,828,516 - CA264_07905 0.64 +0.8 1,828,566 - CA264_07905 0.75 -2.2 1,828,621 + CA264_07905 0.86 +0.7 1,828,708 + -0.0 1,828,709 - +0.1 1,828,734 - +0.4 1,828,815 + +0.0 1,828,815 + -0.7 1,828,815 + -2.1 1,828,838 - +0.1 1,828,862 + -0.2 1,828,891 - +1.5 1,828,908 - +0.3 1,828,908 - -0.3 1,828,923 + -0.3 1,828,949 + -0.7 1,828,949 + +1.2
Or see this region's nucleotide sequence