Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06730

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06725 and CA264_06730 are separated by 186 nucleotidesCA264_06730 and CA264_06735 are separated by 199 nucleotidesCA264_06735 and CA264_06740 overlap by 8 nucleotides CA264_06725: CA264_06725 - SusC/RagA family TonB-linked outer membrane protein, at 1,554,413 to 1,557,904 _06725 CA264_06730: CA264_06730 - hypothetical protein, at 1,558,091 to 1,559,287 _06730 CA264_06735: CA264_06735 - hypothetical protein, at 1,559,487 to 1,559,816 _06735 CA264_06740: CA264_06740 - hypothetical protein, at 1,559,809 to 1,560,258 _06740 Position (kb) 1558 1559 1560Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1557.139 kb on + strand, within CA264_06725at 1557.200 kb on + strand, within CA264_06725at 1557.201 kb on - strand, within CA264_06725at 1557.324 kb on - strand, within CA264_06725at 1557.352 kb on + strand, within CA264_06725at 1557.376 kb on + strand, within CA264_06725at 1557.377 kb on - strand, within CA264_06725at 1557.440 kb on - strand, within CA264_06725at 1557.570 kb on - strandat 1557.623 kb on - strandat 1557.699 kb on - strandat 1557.699 kb on - strandat 1557.745 kb on - strandat 1557.745 kb on - strandat 1557.823 kb on + strandat 1557.858 kb on + strandat 1557.859 kb on - strandat 1557.910 kb on - strandat 1557.944 kb on + strandat 1557.945 kb on - strandat 1557.945 kb on - strandat 1557.947 kb on + strandat 1557.947 kb on + strandat 1557.949 kb on + strandat 1557.949 kb on + strandat 1557.980 kb on + strandat 1557.985 kb on - strandat 1557.989 kb on + strandat 1557.989 kb on + strandat 1557.989 kb on + strandat 1558.001 kb on + strandat 1558.012 kb on + strandat 1558.170 kb on - strandat 1558.373 kb on + strand, within CA264_06730at 1558.373 kb on + strand, within CA264_06730at 1558.376 kb on - strand, within CA264_06730at 1558.399 kb on + strand, within CA264_06730at 1558.400 kb on - strand, within CA264_06730at 1558.400 kb on - strand, within CA264_06730at 1558.559 kb on - strand, within CA264_06730at 1558.562 kb on + strand, within CA264_06730at 1558.636 kb on + strand, within CA264_06730at 1558.637 kb on - strand, within CA264_06730at 1558.656 kb on - strand, within CA264_06730at 1558.787 kb on + strand, within CA264_06730at 1558.806 kb on - strand, within CA264_06730at 1558.887 kb on - strand, within CA264_06730at 1558.949 kb on + strand, within CA264_06730at 1558.962 kb on + strand, within CA264_06730at 1558.963 kb on - strand, within CA264_06730at 1558.986 kb on - strand, within CA264_06730at 1559.007 kb on + strand, within CA264_06730at 1559.223 kb on - strandat 1559.304 kb on + strandat 1559.359 kb on + strandat 1559.363 kb on + strandat 1559.367 kb on + strandat 1559.367 kb on + strandat 1559.368 kb on - strandat 1559.368 kb on - strandat 1559.370 kb on + strandat 1559.419 kb on + strandat 1559.475 kb on + strandat 1559.476 kb on - strandat 1559.506 kb on + strandat 1559.507 kb on - strandat 1559.512 kb on + strandat 1559.513 kb on - strandat 1559.537 kb on + strand, within CA264_06735at 1559.585 kb on - strand, within CA264_06735at 1559.585 kb on - strand, within CA264_06735at 1559.589 kb on + strand, within CA264_06735at 1559.590 kb on - strand, within CA264_06735at 1559.591 kb on + strand, within CA264_06735at 1559.593 kb on + strand, within CA264_06735at 1559.593 kb on + strand, within CA264_06735at 1559.593 kb on + strand, within CA264_06735at 1559.593 kb on + strand, within CA264_06735at 1559.594 kb on - strand, within CA264_06735at 1559.710 kb on + strand, within CA264_06735at 1559.746 kb on + strand, within CA264_06735at 1559.751 kb on + strand, within CA264_06735at 1559.752 kb on - strand, within CA264_06735at 1559.753 kb on + strand, within CA264_06735at 1559.754 kb on - strand, within CA264_06735at 1559.786 kb on + strandat 1559.789 kb on + strandat 1559.790 kb on - strandat 1559.795 kb on + strandat 1559.796 kb on - strandat 1559.800 kb on + strandat 1559.876 kb on - strand, within CA264_06740at 1559.878 kb on + strand, within CA264_06740at 1559.878 kb on + strand, within CA264_06740at 1559.913 kb on - strand, within CA264_06740at 1559.919 kb on + strand, within CA264_06740at 1559.956 kb on - strand, within CA264_06740at 1559.962 kb on + strand, within CA264_06740at 1560.020 kb on - strand, within CA264_06740at 1560.079 kb on + strand, within CA264_06740at 1560.137 kb on + strand, within CA264_06740at 1560.138 kb on - strand, within CA264_06740at 1560.142 kb on + strand, within CA264_06740at 1560.143 kb on - strand, within CA264_06740at 1560.256 kb on + strandat 1560.256 kb on + strandat 1560.257 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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1,557,139 + CA264_06725 0.78 +0.6
1,557,200 + CA264_06725 0.80 +3.1
1,557,201 - CA264_06725 0.80 -1.0
1,557,324 - CA264_06725 0.83 -0.3
1,557,352 + CA264_06725 0.84 -0.8
1,557,376 + CA264_06725 0.85 -0.1
1,557,377 - CA264_06725 0.85 -0.1
1,557,440 - CA264_06725 0.87 -0.8
1,557,570 - -0.2
1,557,623 - -0.4
1,557,699 - +0.6
1,557,699 - +1.5
1,557,745 - -1.7
1,557,745 - -0.0
1,557,823 + -0.4
1,557,858 + -0.6
1,557,859 - -0.2
1,557,910 - +0.0
1,557,944 + -0.8
1,557,945 - -0.1
1,557,945 - +0.1
1,557,947 + -0.3
1,557,947 + -0.4
1,557,949 + +1.4
1,557,949 + -0.7
1,557,980 + -0.0
1,557,985 - -0.4
1,557,989 + -2.3
1,557,989 + -1.1
1,557,989 + -0.2
1,558,001 + +0.2
1,558,012 + +0.6
1,558,170 - -2.2
1,558,373 + CA264_06730 0.24 +0.4
1,558,373 + CA264_06730 0.24 -0.2
1,558,376 - CA264_06730 0.24 +0.8
1,558,399 + CA264_06730 0.26 -0.6
1,558,400 - CA264_06730 0.26 -0.6
1,558,400 - CA264_06730 0.26 +1.4
1,558,559 - CA264_06730 0.39 -0.6
1,558,562 + CA264_06730 0.39 +0.1
1,558,636 + CA264_06730 0.46 +0.8
1,558,637 - CA264_06730 0.46 -0.7
1,558,656 - CA264_06730 0.47 +0.6
1,558,787 + CA264_06730 0.58 -0.5
1,558,806 - CA264_06730 0.60 -0.5
1,558,887 - CA264_06730 0.66 +0.6
1,558,949 + CA264_06730 0.72 +0.7
1,558,962 + CA264_06730 0.73 -0.9
1,558,963 - CA264_06730 0.73 +0.5
1,558,986 - CA264_06730 0.75 +0.9
1,559,007 + CA264_06730 0.77 -0.2
1,559,223 - -0.1
1,559,304 + -0.6
1,559,359 + -1.3
1,559,363 + -0.4
1,559,367 + +1.4
1,559,367 + -1.4
1,559,368 - +1.2
1,559,368 - -1.9
1,559,370 + -1.7
1,559,419 + -0.7
1,559,475 + -0.2
1,559,476 - -0.5
1,559,506 + +0.3
1,559,507 - -0.4
1,559,512 + +0.2
1,559,513 - +0.6
1,559,537 + CA264_06735 0.15 +0.7
1,559,585 - CA264_06735 0.30 +0.2
1,559,585 - CA264_06735 0.30 -1.3
1,559,589 + CA264_06735 0.31 +0.4
1,559,590 - CA264_06735 0.31 +0.2
1,559,591 + CA264_06735 0.32 -0.6
1,559,593 + CA264_06735 0.32 -0.0
1,559,593 + CA264_06735 0.32 -1.0
1,559,593 + CA264_06735 0.32 +0.0
1,559,593 + CA264_06735 0.32 -1.9
1,559,594 - CA264_06735 0.32 -0.8
1,559,710 + CA264_06735 0.68 -0.2
1,559,746 + CA264_06735 0.78 -2.2
1,559,751 + CA264_06735 0.80 -0.4
1,559,752 - CA264_06735 0.80 -0.8
1,559,753 + CA264_06735 0.81 -0.7
1,559,754 - CA264_06735 0.81 -0.2
1,559,786 + +0.6
1,559,789 + -0.2
1,559,790 - +0.1
1,559,795 + -0.1
1,559,796 - +1.3
1,559,800 + -0.8
1,559,876 - CA264_06740 0.15 +1.3
1,559,878 + CA264_06740 0.15 +1.3
1,559,878 + CA264_06740 0.15 +0.9
1,559,913 - CA264_06740 0.23 +0.4
1,559,919 + CA264_06740 0.24 -0.1
1,559,956 - CA264_06740 0.33 -0.3
1,559,962 + CA264_06740 0.34 -0.0
1,560,020 - CA264_06740 0.47 -0.4
1,560,079 + CA264_06740 0.60 -0.0
1,560,137 + CA264_06740 0.73 +1.3
1,560,138 - CA264_06740 0.73 -2.7
1,560,142 + CA264_06740 0.74 +0.3
1,560,143 - CA264_06740 0.74 +0.5
1,560,256 + +0.0
1,560,256 + -0.7
1,560,257 - +0.4

Or see this region's nucleotide sequence