Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05200

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05195 and CA264_05200 are separated by 49 nucleotidesCA264_05200 and CA264_05205 are separated by 119 nucleotidesCA264_05205 and CA264_05210 are separated by 58 nucleotidesCA264_05210 and CA264_05215 are separated by 58 nucleotidesCA264_05215 and CA264_05220 are separated by 223 nucleotides CA264_05195: CA264_05195 - GDP-fucose synthetase, at 1,206,423 to 1,207,358 _05195 CA264_05200: CA264_05200 - GDP-mannose 4,6-dehydratase, at 1,207,408 to 1,208,520 _05200 CA264_05205: CA264_05205 - tRNA-Asp, at 1,208,640 to 1,208,713 _05205 CA264_05210: CA264_05210 - tRNA-Asp, at 1,208,772 to 1,208,845 _05210 CA264_05215: CA264_05215 - tRNA-Asp, at 1,208,904 to 1,208,977 _05215 CA264_05220: CA264_05220 - acetyl-CoA carboxylase carboxyl transferase subunit alpha, at 1,209,201 to 1,210,151 _05220 Position (kb) 1207 1208 1209Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1206.418 kb on - strandat 1206.422 kb on + strandat 1206.423 kb on - strandat 1206.423 kb on - strandat 1206.597 kb on + strand, within CA264_05195at 1206.598 kb on - strand, within CA264_05195at 1206.695 kb on + strand, within CA264_05195at 1206.792 kb on + strand, within CA264_05195at 1206.792 kb on + strand, within CA264_05195at 1206.831 kb on + strand, within CA264_05195at 1206.832 kb on - strand, within CA264_05195at 1206.857 kb on + strand, within CA264_05195at 1206.858 kb on - strand, within CA264_05195at 1206.858 kb on - strand, within CA264_05195at 1206.930 kb on + strand, within CA264_05195at 1206.943 kb on - strand, within CA264_05195at 1207.028 kb on - strand, within CA264_05195at 1207.290 kb on - strandat 1207.295 kb on - strandat 1207.323 kb on + strandat 1207.323 kb on + strandat 1207.345 kb on + strandat 1207.348 kb on + strandat 1207.348 kb on + strandat 1207.356 kb on + strandat 1207.356 kb on + strandat 1207.359 kb on + strandat 1207.360 kb on - strandat 1207.360 kb on - strandat 1207.360 kb on - strandat 1207.361 kb on + strandat 1207.361 kb on + strandat 1207.361 kb on + strandat 1207.362 kb on - strandat 1207.362 kb on - strandat 1207.364 kb on - strandat 1207.364 kb on - strandat 1207.364 kb on - strandat 1207.365 kb on + strandat 1207.375 kb on + strandat 1207.375 kb on + strandat 1207.379 kb on - strandat 1207.381 kb on - strandat 1207.391 kb on + strandat 1207.422 kb on + strandat 1207.422 kb on + strandat 1207.422 kb on + strandat 1207.423 kb on - strandat 1207.423 kb on - strandat 1207.424 kb on + strandat 1207.433 kb on + strandat 1207.453 kb on + strandat 1207.453 kb on + strandat 1207.454 kb on - strandat 1207.469 kb on + strandat 1207.515 kb on + strandat 1207.524 kb on + strand, within CA264_05200at 1207.544 kb on + strand, within CA264_05200at 1207.545 kb on - strand, within CA264_05200at 1207.545 kb on - strand, within CA264_05200at 1207.545 kb on - strand, within CA264_05200at 1207.545 kb on - strand, within CA264_05200at 1207.686 kb on - strand, within CA264_05200at 1207.763 kb on + strand, within CA264_05200at 1207.763 kb on + strand, within CA264_05200at 1207.789 kb on + strand, within CA264_05200at 1207.892 kb on - strand, within CA264_05200at 1207.905 kb on + strand, within CA264_05200at 1207.912 kb on - strand, within CA264_05200at 1207.912 kb on - strand, within CA264_05200at 1207.912 kb on - strand, within CA264_05200at 1207.936 kb on + strand, within CA264_05200at 1207.936 kb on + strand, within CA264_05200at 1207.936 kb on + strand, within CA264_05200at 1207.937 kb on - strand, within CA264_05200at 1207.937 kb on - strand, within CA264_05200at 1207.937 kb on - strand, within CA264_05200at 1207.937 kb on - strand, within CA264_05200at 1207.937 kb on - strand, within CA264_05200at 1207.951 kb on - strand, within CA264_05200at 1207.951 kb on - strand, within CA264_05200at 1207.956 kb on - strand, within CA264_05200at 1207.960 kb on - strand, within CA264_05200at 1208.058 kb on - strand, within CA264_05200at 1208.058 kb on - strand, within CA264_05200at 1208.101 kb on + strand, within CA264_05200at 1208.102 kb on - strand, within CA264_05200at 1208.102 kb on - strand, within CA264_05200at 1208.102 kb on - strand, within CA264_05200at 1208.105 kb on + strand, within CA264_05200at 1208.105 kb on + strand, within CA264_05200at 1208.105 kb on + strand, within CA264_05200at 1208.106 kb on - strand, within CA264_05200at 1208.106 kb on - strand, within CA264_05200at 1208.150 kb on - strand, within CA264_05200at 1208.214 kb on - strand, within CA264_05200at 1208.260 kb on + strand, within CA264_05200at 1208.260 kb on + strand, within CA264_05200at 1208.261 kb on - strand, within CA264_05200at 1208.322 kb on - strand, within CA264_05200at 1208.388 kb on + strand, within CA264_05200at 1208.389 kb on - strand, within CA264_05200at 1208.410 kb on + strandat 1208.477 kb on - strandat 1208.529 kb on + strandat 1208.534 kb on + strandat 1208.534 kb on + strandat 1208.535 kb on - strandat 1208.535 kb on - strandat 1208.535 kb on - strandat 1208.536 kb on + strandat 1208.536 kb on + strandat 1208.536 kb on + strandat 1208.537 kb on - strandat 1208.537 kb on - strandat 1208.540 kb on - strandat 1208.583 kb on - strandat 1208.583 kb on - strandat 1209.062 kb on + strandat 1209.071 kb on - strandat 1209.086 kb on - strandat 1209.089 kb on - strandat 1209.129 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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1,206,418 - -0.8
1,206,422 + -0.1
1,206,423 - +1.1
1,206,423 - +0.5
1,206,597 + CA264_05195 0.19 -0.3
1,206,598 - CA264_05195 0.19 +0.3
1,206,695 + CA264_05195 0.29 -1.3
1,206,792 + CA264_05195 0.39 +0.3
1,206,792 + CA264_05195 0.39 -1.2
1,206,831 + CA264_05195 0.44 -0.3
1,206,832 - CA264_05195 0.44 -0.5
1,206,857 + CA264_05195 0.46 -0.3
1,206,858 - CA264_05195 0.46 -0.4
1,206,858 - CA264_05195 0.46 -0.4
1,206,930 + CA264_05195 0.54 -0.5
1,206,943 - CA264_05195 0.56 +0.4
1,207,028 - CA264_05195 0.65 -0.6
1,207,290 - +0.6
1,207,295 - -0.5
1,207,323 + -0.1
1,207,323 + -3.2
1,207,345 + -0.9
1,207,348 + -0.6
1,207,348 + +0.2
1,207,356 + +0.4
1,207,356 + -0.6
1,207,359 + -0.9
1,207,360 - +0.6
1,207,360 - -0.4
1,207,360 - -0.2
1,207,361 + +0.6
1,207,361 + +0.6
1,207,361 + +0.1
1,207,362 - +0.1
1,207,362 - -0.2
1,207,364 - -0.1
1,207,364 - -0.4
1,207,364 - -0.3
1,207,365 + +0.3
1,207,375 + -0.7
1,207,375 + +1.0
1,207,379 - +0.7
1,207,381 - -1.8
1,207,391 + -0.2
1,207,422 + +0.0
1,207,422 + +0.3
1,207,422 + -0.1
1,207,423 - +0.3
1,207,423 - +0.9
1,207,424 + -1.0
1,207,433 + -0.2
1,207,453 + +1.6
1,207,453 + +2.3
1,207,454 - +1.9
1,207,469 + +0.6
1,207,515 + +1.1
1,207,524 + CA264_05200 0.10 +0.8
1,207,544 + CA264_05200 0.12 -1.5
1,207,545 - CA264_05200 0.12 +0.4
1,207,545 - CA264_05200 0.12 -0.2
1,207,545 - CA264_05200 0.12 -0.6
1,207,545 - CA264_05200 0.12 -1.1
1,207,686 - CA264_05200 0.25 +0.0
1,207,763 + CA264_05200 0.32 -2.0
1,207,763 + CA264_05200 0.32 -0.2
1,207,789 + CA264_05200 0.34 +1.0
1,207,892 - CA264_05200 0.43 +0.6
1,207,905 + CA264_05200 0.45 -0.2
1,207,912 - CA264_05200 0.45 -0.4
1,207,912 - CA264_05200 0.45 +0.3
1,207,912 - CA264_05200 0.45 -1.7
1,207,936 + CA264_05200 0.47 +0.1
1,207,936 + CA264_05200 0.47 -0.9
1,207,936 + CA264_05200 0.47 -0.4
1,207,937 - CA264_05200 0.48 +0.2
1,207,937 - CA264_05200 0.48 +0.3
1,207,937 - CA264_05200 0.48 -0.5
1,207,937 - CA264_05200 0.48 +0.1
1,207,937 - CA264_05200 0.48 +0.5
1,207,951 - CA264_05200 0.49 -1.1
1,207,951 - CA264_05200 0.49 -0.0
1,207,956 - CA264_05200 0.49 +0.0
1,207,960 - CA264_05200 0.50 +0.7
1,208,058 - CA264_05200 0.58 -0.9
1,208,058 - CA264_05200 0.58 -0.8
1,208,101 + CA264_05200 0.62 -1.0
1,208,102 - CA264_05200 0.62 -0.4
1,208,102 - CA264_05200 0.62 -0.7
1,208,102 - CA264_05200 0.62 -0.1
1,208,105 + CA264_05200 0.63 +0.1
1,208,105 + CA264_05200 0.63 -0.1
1,208,105 + CA264_05200 0.63 +0.0
1,208,106 - CA264_05200 0.63 -2.0
1,208,106 - CA264_05200 0.63 -1.3
1,208,150 - CA264_05200 0.67 +0.5
1,208,214 - CA264_05200 0.72 +0.1
1,208,260 + CA264_05200 0.77 -0.7
1,208,260 + CA264_05200 0.77 -0.8
1,208,261 - CA264_05200 0.77 +0.2
1,208,322 - CA264_05200 0.82 -0.9
1,208,388 + CA264_05200 0.88 -0.2
1,208,389 - CA264_05200 0.88 +0.3
1,208,410 + -0.1
1,208,477 - -1.7
1,208,529 + +0.2
1,208,534 + +0.9
1,208,534 + +0.8
1,208,535 - -0.1
1,208,535 - +0.5
1,208,535 - -0.0
1,208,536 + +1.2
1,208,536 + -0.6
1,208,536 + +0.1
1,208,537 - +0.8
1,208,537 - +0.4
1,208,540 - +1.5
1,208,583 - +0.1
1,208,583 - +0.7
1,209,062 + +0.4
1,209,071 - -0.3
1,209,086 - +2.6
1,209,089 - +0.7
1,209,129 + -0.4

Or see this region's nucleotide sequence