Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_05165 and CA264_05170 are separated by 67 nucleotides CA264_05170 and CA264_05175 are separated by 78 nucleotides CA264_05175 and CA264_05180 are separated by 171 nucleotides
CA264_05165: CA264_05165 - potassium transporter KefB, at 1,198,813 to 1,200,813
_05165
CA264_05170: CA264_05170 - phosphohydrolase, at 1,200,881 to 1,201,534
_05170
CA264_05175: CA264_05175 - hypothetical protein, at 1,201,613 to 1,202,074
_05175
CA264_05180: CA264_05180 - hypothetical protein, at 1,202,246 to 1,203,079
_05180
Position (kb)
1200
1201
1202 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 1199.890 kb on + strand, within CA264_05165 at 1200.047 kb on + strand, within CA264_05165 at 1200.064 kb on - strand, within CA264_05165 at 1200.139 kb on + strand, within CA264_05165 at 1200.139 kb on + strand, within CA264_05165 at 1200.153 kb on + strand, within CA264_05165 at 1200.154 kb on - strand, within CA264_05165 at 1200.157 kb on + strand, within CA264_05165 at 1200.157 kb on + strand, within CA264_05165 at 1200.157 kb on + strand, within CA264_05165 at 1200.159 kb on + strand, within CA264_05165 at 1200.159 kb on + strand, within CA264_05165 at 1200.232 kb on + strand, within CA264_05165 at 1200.330 kb on + strand, within CA264_05165 at 1200.330 kb on + strand, within CA264_05165 at 1200.331 kb on - strand, within CA264_05165 at 1200.462 kb on + strand, within CA264_05165 at 1200.643 kb on + strand at 1200.697 kb on + strand at 1200.735 kb on + strand at 1200.735 kb on + strand at 1200.780 kb on + strand at 1200.784 kb on - strand at 1200.784 kb on - strand at 1200.787 kb on + strand at 1200.787 kb on + strand at 1200.787 kb on + strand at 1200.788 kb on - strand at 1200.788 kb on - strand at 1200.788 kb on - strand at 1200.788 kb on - strand at 1200.799 kb on + strand at 1200.800 kb on - strand at 1200.818 kb on + strand at 1200.819 kb on - strand at 1200.819 kb on - strand at 1200.819 kb on - strand at 1200.819 kb on - strand at 1200.819 kb on - strand at 1200.820 kb on + strand at 1200.882 kb on + strand at 1200.906 kb on + strand at 1200.933 kb on + strand at 1200.933 kb on + strand at 1200.934 kb on - strand at 1200.934 kb on - strand at 1200.980 kb on - strand, within CA264_05170 at 1200.980 kb on - strand, within CA264_05170 at 1201.009 kb on - strand, within CA264_05170 at 1201.089 kb on + strand, within CA264_05170 at 1201.385 kb on + strand, within CA264_05170 at 1201.386 kb on - strand, within CA264_05170 at 1201.386 kb on - strand, within CA264_05170 at 1201.386 kb on - strand, within CA264_05170 at 1201.389 kb on + strand, within CA264_05170 at 1201.389 kb on + strand, within CA264_05170 at 1201.389 kb on + strand, within CA264_05170 at 1201.389 kb on + strand, within CA264_05170 at 1201.390 kb on - strand, within CA264_05170 at 1201.390 kb on - strand, within CA264_05170 at 1201.390 kb on - strand, within CA264_05170 at 1201.390 kb on - strand, within CA264_05170 at 1201.390 kb on - strand, within CA264_05170 at 1201.393 kb on + strand, within CA264_05170 at 1201.485 kb on - strand at 1201.493 kb on + strand at 1201.494 kb on - strand at 1201.497 kb on + strand at 1201.553 kb on + strand at 1201.615 kb on - strand at 1201.616 kb on + strand at 1201.698 kb on + strand, within CA264_05175 at 1201.698 kb on + strand, within CA264_05175 at 1201.704 kb on - strand, within CA264_05175 at 1201.704 kb on - strand, within CA264_05175 at 1201.779 kb on - strand, within CA264_05175 at 1201.913 kb on - strand, within CA264_05175 at 1202.002 kb on - strand, within CA264_05175 at 1202.002 kb on - strand, within CA264_05175 at 1202.089 kb on - strand at 1202.091 kb on + strand at 1202.092 kb on - strand at 1202.092 kb on - strand at 1202.094 kb on + strand at 1202.168 kb on + strand at 1202.169 kb on - strand at 1202.172 kb on - strand at 1202.173 kb on + strand at 1202.173 kb on + strand at 1202.174 kb on - strand at 1202.227 kb on - strand at 1202.245 kb on + strand at 1202.245 kb on + strand at 1202.246 kb on - strand at 1202.246 kb on - strand at 1202.262 kb on - strand at 1202.293 kb on - strand at 1202.372 kb on + strand, within CA264_05180 at 1202.372 kb on + strand, within CA264_05180 at 1202.373 kb on - strand, within CA264_05180 at 1202.444 kb on + strand, within CA264_05180 at 1202.470 kb on + strand, within CA264_05180 at 1202.470 kb on + strand, within CA264_05180 at 1202.478 kb on - strand, within CA264_05180 at 1202.498 kb on + strand, within CA264_05180 at 1202.498 kb on + strand, within CA264_05180 at 1202.499 kb on - strand, within CA264_05180 at 1202.499 kb on - strand, within CA264_05180 at 1202.499 kb on - strand, within CA264_05180 at 1202.518 kb on + strand, within CA264_05180 at 1202.518 kb on + strand, within CA264_05180 at 1202.519 kb on - strand, within CA264_05180 at 1202.519 kb on - strand, within CA264_05180 at 1202.519 kb on - strand, within CA264_05180 at 1202.519 kb on - strand, within CA264_05180 at 1202.519 kb on - strand, within CA264_05180 at 1202.522 kb on + strand, within CA264_05180 at 1202.522 kb on + strand, within CA264_05180 at 1202.523 kb on - strand, within CA264_05180 at 1202.532 kb on + strand, within CA264_05180
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 1,199,890 + CA264_05165 0.54 +0.3 1,200,047 + CA264_05165 0.62 -0.4 1,200,064 - CA264_05165 0.63 -0.0 1,200,139 + CA264_05165 0.66 +0.6 1,200,139 + CA264_05165 0.66 +0.0 1,200,153 + CA264_05165 0.67 -1.4 1,200,154 - CA264_05165 0.67 +0.8 1,200,157 + CA264_05165 0.67 -2.3 1,200,157 + CA264_05165 0.67 +0.5 1,200,157 + CA264_05165 0.67 +0.1 1,200,159 + CA264_05165 0.67 -0.9 1,200,159 + CA264_05165 0.67 -2.2 1,200,232 + CA264_05165 0.71 +0.1 1,200,330 + CA264_05165 0.76 -0.3 1,200,330 + CA264_05165 0.76 -1.3 1,200,331 - CA264_05165 0.76 +0.4 1,200,462 + CA264_05165 0.82 -2.2 1,200,643 + -0.4 1,200,697 + -1.7 1,200,735 + -3.2 1,200,735 + -2.3 1,200,780 + -2.3 1,200,784 - -1.8 1,200,784 - +1.9 1,200,787 + +1.0 1,200,787 + -2.2 1,200,787 + -2.1 1,200,788 - -0.2 1,200,788 - -1.1 1,200,788 - -0.4 1,200,788 - -2.1 1,200,799 + -1.9 1,200,800 - +0.7 1,200,818 + -1.6 1,200,819 - +1.4 1,200,819 - +0.5 1,200,819 - +0.9 1,200,819 - -0.2 1,200,819 - +0.2 1,200,820 + -1.4 1,200,882 + +0.4 1,200,906 + +1.0 1,200,933 + -2.7 1,200,933 + -1.9 1,200,934 - +1.3 1,200,934 - +0.1 1,200,980 - CA264_05170 0.15 -1.1 1,200,980 - CA264_05170 0.15 +0.2 1,201,009 - CA264_05170 0.20 +0.8 1,201,089 + CA264_05170 0.32 -3.4 1,201,385 + CA264_05170 0.77 -0.2 1,201,386 - CA264_05170 0.77 -2.6 1,201,386 - CA264_05170 0.77 -0.7 1,201,386 - CA264_05170 0.77 -3.0 1,201,389 + CA264_05170 0.78 -0.4 1,201,389 + CA264_05170 0.78 -1.0 1,201,389 + CA264_05170 0.78 -5.7 1,201,389 + CA264_05170 0.78 -3.0 1,201,390 - CA264_05170 0.78 +0.4 1,201,390 - CA264_05170 0.78 -1.4 1,201,390 - CA264_05170 0.78 -1.5 1,201,390 - CA264_05170 0.78 -1.8 1,201,390 - CA264_05170 0.78 -1.6 1,201,393 + CA264_05170 0.78 -1.3 1,201,485 - +0.3 1,201,493 + -2.2 1,201,494 - -0.8 1,201,497 + -4.8 1,201,553 + -3.9 1,201,615 - -1.6 1,201,616 + -4.4 1,201,698 + CA264_05175 0.18 -2.4 1,201,698 + CA264_05175 0.18 -1.2 1,201,704 - CA264_05175 0.20 -2.3 1,201,704 - CA264_05175 0.20 -0.8 1,201,779 - CA264_05175 0.36 -1.4 1,201,913 - CA264_05175 0.65 -2.6 1,202,002 - CA264_05175 0.84 -3.5 1,202,002 - CA264_05175 0.84 -1.7 1,202,089 - -3.2 1,202,091 + -3.6 1,202,092 - -0.6 1,202,092 - -1.9 1,202,094 + -2.3 1,202,168 + -4.2 1,202,169 - -1.4 1,202,172 - -2.4 1,202,173 + -3.7 1,202,173 + -2.1 1,202,174 - -2.7 1,202,227 - +0.0 1,202,245 + +0.8 1,202,245 + +0.6 1,202,246 - +1.5 1,202,246 - +2.5 1,202,262 - +3.2 1,202,293 - +3.2 1,202,372 + CA264_05180 0.15 +2.9 1,202,372 + CA264_05180 0.15 +3.1 1,202,373 - CA264_05180 0.15 +2.4 1,202,444 + CA264_05180 0.24 +0.3 1,202,470 + CA264_05180 0.27 +1.9 1,202,470 + CA264_05180 0.27 +2.8 1,202,478 - CA264_05180 0.28 +3.0 1,202,498 + CA264_05180 0.30 +2.2 1,202,498 + CA264_05180 0.30 +2.4 1,202,499 - CA264_05180 0.30 +3.3 1,202,499 - CA264_05180 0.30 +3.4 1,202,499 - CA264_05180 0.30 +3.2 1,202,518 + CA264_05180 0.33 +3.6 1,202,518 + CA264_05180 0.33 +2.9 1,202,519 - CA264_05180 0.33 +2.9 1,202,519 - CA264_05180 0.33 +3.0 1,202,519 - CA264_05180 0.33 +2.3 1,202,519 - CA264_05180 0.33 +2.7 1,202,519 - CA264_05180 0.33 +2.5 1,202,522 + CA264_05180 0.33 +2.5 1,202,522 + CA264_05180 0.33 +2.9 1,202,523 - CA264_05180 0.33 +2.4 1,202,532 + CA264_05180 0.34 +2.2
Or see this region's nucleotide sequence