Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04665

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04660 and CA264_04665 are separated by 2 nucleotidesCA264_04665 and CA264_04670 are separated by 123 nucleotidesCA264_04670 and CA264_04675 are separated by 0 nucleotides CA264_04660: CA264_04660 - hypothetical protein, at 1,076,612 to 1,081,150 _04660 CA264_04665: CA264_04665 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 1,081,153 to 1,082,160 _04665 CA264_04670: CA264_04670 - hypothetical protein, at 1,082,284 to 1,082,670 _04670 CA264_04675: CA264_04675 - SsrA-binding protein, at 1,082,671 to 1,083,138 _04675 Position (kb) 1081 1082 1083Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1080.984 kb on - strandat 1081.114 kb on + strandat 1082.151 kb on - strandat 1082.162 kb on - strandat 1082.162 kb on - strandat 1082.288 kb on + strandat 1082.312 kb on - strandat 1082.315 kb on + strandat 1082.316 kb on - strandat 1082.436 kb on - strand, within CA264_04670at 1082.520 kb on + strand, within CA264_04670at 1082.523 kb on - strand, within CA264_04670at 1082.562 kb on + strand, within CA264_04670at 1082.562 kb on + strand, within CA264_04670at 1082.563 kb on - strand, within CA264_04670at 1082.667 kb on - strandat 1082.668 kb on + strandat 1082.669 kb on - strandat 1082.706 kb on - strandat 1083.136 kb on + strandat 1083.142 kb on + strandat 1083.142 kb on + strandat 1083.143 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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1,080,984 - +0.3
1,081,114 + -0.6
1,082,151 - +0.6
1,082,162 - -1.1
1,082,162 - +0.9
1,082,288 + -1.1
1,082,312 - +0.6
1,082,315 + -0.4
1,082,316 - +0.2
1,082,436 - CA264_04670 0.39 +1.8
1,082,520 + CA264_04670 0.61 -2.9
1,082,523 - CA264_04670 0.62 +0.1
1,082,562 + CA264_04670 0.72 -0.0
1,082,562 + CA264_04670 0.72 +0.7
1,082,563 - CA264_04670 0.72 -0.4
1,082,667 - +0.5
1,082,668 + -1.2
1,082,669 - -0.4
1,082,706 - -0.6
1,083,136 + +0.0
1,083,142 + -0.3
1,083,142 + -1.5
1,083,143 - +1.0

Or see this region's nucleotide sequence