Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03675 and CA264_03680 are separated by 108 nucleotides CA264_03680 and CA264_03685 are separated by 108 nucleotides
CA264_03675: CA264_03675 - hypothetical protein, at 858,433 to 859,383
_03675
CA264_03680: CA264_03680 - hypothetical protein, at 859,492 to 859,809
_03680
CA264_03685: CA264_03685 - CusA/CzcA family heavy metal efflux RND transporter, at 859,918 to 864,294
_03685
Position (kb) 859
860 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 858.499 kb on + strand at 858.499 kb on + strand at 858.499 kb on + strand at 858.499 kb on + strand at 858.502 kb on + strand at 858.504 kb on + strand at 858.505 kb on - strand at 858.505 kb on - strand at 858.550 kb on + strand, within CA264_03675 at 858.551 kb on - strand, within CA264_03675 at 858.551 kb on - strand, within CA264_03675 at 858.551 kb on - strand, within CA264_03675 at 858.553 kb on - strand, within CA264_03675 at 858.566 kb on - strand, within CA264_03675 at 858.740 kb on + strand, within CA264_03675 at 858.740 kb on + strand, within CA264_03675 at 858.741 kb on - strand, within CA264_03675 at 858.741 kb on - strand, within CA264_03675 at 858.779 kb on - strand, within CA264_03675 at 858.779 kb on - strand, within CA264_03675 at 858.877 kb on + strand, within CA264_03675 at 858.900 kb on + strand, within CA264_03675 at 859.132 kb on + strand, within CA264_03675 at 859.255 kb on + strand, within CA264_03675 at 859.255 kb on + strand, within CA264_03675 at 859.272 kb on + strand, within CA264_03675 at 859.293 kb on + strand at 859.294 kb on - strand at 859.294 kb on - strand at 859.382 kb on - strand at 859.456 kb on - strand at 859.462 kb on - strand at 859.467 kb on + strand at 859.468 kb on - strand at 859.584 kb on + strand, within CA264_03680 at 859.662 kb on + strand, within CA264_03680 at 859.663 kb on - strand, within CA264_03680 at 859.663 kb on - strand, within CA264_03680 at 859.743 kb on - strand, within CA264_03680 at 859.743 kb on - strand, within CA264_03680 at 859.751 kb on - strand, within CA264_03680 at 859.751 kb on - strand, within CA264_03680 at 859.826 kb on + strand at 859.900 kb on + strand at 859.901 kb on - strand at 859.926 kb on + strand at 859.927 kb on - strand at 859.965 kb on - strand at 860.003 kb on - strand at 860.109 kb on + strand at 860.110 kb on - strand at 860.110 kb on - strand at 860.143 kb on - strand at 860.219 kb on + strand at 860.227 kb on + strand at 860.227 kb on + strand at 860.228 kb on - strand at 860.338 kb on + strand at 860.339 kb on - strand at 860.352 kb on - strand at 860.459 kb on + strand, within CA264_03685 at 860.524 kb on + strand, within CA264_03685 at 860.525 kb on - strand, within CA264_03685 at 860.592 kb on + strand, within CA264_03685 at 860.614 kb on + strand, within CA264_03685 at 860.703 kb on - strand, within CA264_03685
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 858,499 + -0.1 858,499 + -0.5 858,499 + -0.3 858,499 + -0.6 858,502 + +0.2 858,504 + +0.3 858,505 - -0.7 858,505 - -0.5 858,550 + CA264_03675 0.12 +0.2 858,551 - CA264_03675 0.12 -2.7 858,551 - CA264_03675 0.12 +0.4 858,551 - CA264_03675 0.12 -0.0 858,553 - CA264_03675 0.13 -0.9 858,566 - CA264_03675 0.14 -1.9 858,740 + CA264_03675 0.32 +0.2 858,740 + CA264_03675 0.32 +0.9 858,741 - CA264_03675 0.32 -1.3 858,741 - CA264_03675 0.32 +1.2 858,779 - CA264_03675 0.36 -0.3 858,779 - CA264_03675 0.36 -0.1 858,877 + CA264_03675 0.47 +0.8 858,900 + CA264_03675 0.49 -0.3 859,132 + CA264_03675 0.74 -0.7 859,255 + CA264_03675 0.86 -1.6 859,255 + CA264_03675 0.86 -0.4 859,272 + CA264_03675 0.88 -0.5 859,293 + -2.1 859,294 - -0.5 859,294 - -0.4 859,382 - +0.4 859,456 - +1.0 859,462 - -0.3 859,467 + -0.6 859,468 - -0.3 859,584 + CA264_03680 0.29 -0.9 859,662 + CA264_03680 0.53 -1.0 859,663 - CA264_03680 0.54 -0.6 859,663 - CA264_03680 0.54 +0.8 859,743 - CA264_03680 0.79 +0.4 859,743 - CA264_03680 0.79 -0.8 859,751 - CA264_03680 0.81 -0.7 859,751 - CA264_03680 0.81 -0.5 859,826 + -0.4 859,900 + -1.4 859,901 - -1.1 859,926 + -0.8 859,927 - -0.6 859,965 - -0.8 860,003 - +0.4 860,109 + +1.5 860,110 - +0.4 860,110 - -0.6 860,143 - +0.3 860,219 + +0.1 860,227 + -0.1 860,227 + -0.4 860,228 - -2.2 860,338 + -1.1 860,339 - +1.6 860,352 - -0.9 860,459 + CA264_03685 0.12 +0.0 860,524 + CA264_03685 0.14 -2.9 860,525 - CA264_03685 0.14 +1.4 860,592 + CA264_03685 0.15 -0.6 860,614 + CA264_03685 0.16 -1.2 860,703 - CA264_03685 0.18 -0.9
Or see this region's nucleotide sequence