Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03235

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03230 and CA264_03235 are separated by 86 nucleotidesCA264_03235 and CA264_03240 overlap by 14 nucleotides CA264_03230: CA264_03230 - hypothetical protein, at 760,090 to 761,394 _03230 CA264_03235: CA264_03235 - hypothetical protein, at 761,481 to 762,785 _03235 CA264_03240: CA264_03240 - metal transporter, at 762,772 to 764,670 _03240 Position (kb) 761 762 763Strain fitness (log2 ratio) -2 -1 0 1 2at 760.592 kb on + strand, within CA264_03230at 760.592 kb on + strand, within CA264_03230at 760.708 kb on - strand, within CA264_03230at 760.763 kb on + strand, within CA264_03230at 760.764 kb on - strand, within CA264_03230at 760.772 kb on + strand, within CA264_03230at 760.781 kb on + strand, within CA264_03230at 760.781 kb on + strand, within CA264_03230at 760.782 kb on - strand, within CA264_03230at 760.785 kb on + strand, within CA264_03230at 760.786 kb on - strand, within CA264_03230at 760.797 kb on - strand, within CA264_03230at 760.890 kb on + strand, within CA264_03230at 760.917 kb on - strand, within CA264_03230at 760.956 kb on - strand, within CA264_03230at 760.994 kb on + strand, within CA264_03230at 760.998 kb on + strand, within CA264_03230at 760.998 kb on + strand, within CA264_03230at 760.998 kb on + strand, within CA264_03230at 760.999 kb on - strand, within CA264_03230at 761.051 kb on + strand, within CA264_03230at 761.286 kb on + strandat 761.286 kb on + strandat 761.287 kb on - strandat 761.295 kb on + strandat 761.297 kb on + strandat 761.297 kb on + strandat 761.297 kb on + strandat 761.297 kb on + strandat 761.298 kb on - strandat 761.436 kb on + strandat 761.482 kb on + strandat 761.503 kb on + strandat 761.812 kb on + strand, within CA264_03235at 761.812 kb on + strand, within CA264_03235at 761.812 kb on + strand, within CA264_03235at 762.019 kb on + strand, within CA264_03235at 762.027 kb on - strand, within CA264_03235at 762.077 kb on + strand, within CA264_03235at 762.168 kb on + strand, within CA264_03235at 762.168 kb on + strand, within CA264_03235at 762.169 kb on - strand, within CA264_03235at 762.196 kb on + strand, within CA264_03235at 762.197 kb on - strand, within CA264_03235at 762.197 kb on - strand, within CA264_03235at 762.223 kb on + strand, within CA264_03235at 762.223 kb on + strand, within CA264_03235at 762.229 kb on + strand, within CA264_03235at 762.254 kb on + strand, within CA264_03235at 762.254 kb on + strand, within CA264_03235at 762.254 kb on + strand, within CA264_03235at 762.255 kb on - strand, within CA264_03235at 762.256 kb on + strand, within CA264_03235at 762.256 kb on + strand, within CA264_03235at 762.257 kb on - strand, within CA264_03235at 762.323 kb on - strand, within CA264_03235at 762.323 kb on - strand, within CA264_03235at 762.323 kb on - strand, within CA264_03235at 762.345 kb on + strand, within CA264_03235at 762.355 kb on + strand, within CA264_03235at 762.355 kb on + strand, within CA264_03235at 762.400 kb on + strand, within CA264_03235at 762.400 kb on + strand, within CA264_03235at 762.401 kb on - strand, within CA264_03235at 762.463 kb on + strand, within CA264_03235at 762.463 kb on + strand, within CA264_03235at 762.463 kb on + strand, within CA264_03235at 762.463 kb on + strand, within CA264_03235at 762.464 kb on - strand, within CA264_03235at 762.490 kb on - strand, within CA264_03235at 762.531 kb on + strand, within CA264_03235at 762.598 kb on + strand, within CA264_03235at 762.599 kb on - strand, within CA264_03235at 762.599 kb on - strand, within CA264_03235at 762.599 kb on - strand, within CA264_03235at 762.696 kb on + strandat 762.764 kb on + strandat 762.764 kb on + strandat 762.764 kb on + strandat 762.764 kb on + strandat 762.764 kb on + strandat 762.764 kb on + strandat 762.764 kb on + strandat 762.765 kb on - strandat 762.767 kb on - strandat 762.774 kb on - strandat 762.781 kb on - strandat 762.788 kb on + strandat 762.788 kb on + strandat 762.789 kb on - strandat 762.822 kb on - strandat 762.879 kb on + strandat 763.024 kb on + strand, within CA264_03240at 763.025 kb on - strand, within CA264_03240at 763.028 kb on + strand, within CA264_03240at 763.028 kb on + strand, within CA264_03240at 763.109 kb on + strand, within CA264_03240at 763.109 kb on + strand, within CA264_03240at 763.114 kb on + strand, within CA264_03240at 763.114 kb on + strand, within CA264_03240at 763.114 kb on + strand, within CA264_03240at 763.196 kb on + strand, within CA264_03240at 763.202 kb on + strand, within CA264_03240at 763.202 kb on + strand, within CA264_03240at 763.203 kb on - strand, within CA264_03240at 763.203 kb on - strand, within CA264_03240at 763.204 kb on + strand, within CA264_03240at 763.207 kb on + strand, within CA264_03240at 763.207 kb on + strand, within CA264_03240at 763.207 kb on + strand, within CA264_03240at 763.208 kb on - strand, within CA264_03240at 763.208 kb on - strand, within CA264_03240at 763.209 kb on + strand, within CA264_03240at 763.210 kb on - strand, within CA264_03240at 763.237 kb on + strand, within CA264_03240at 763.238 kb on - strand, within CA264_03240at 763.239 kb on + strand, within CA264_03240at 763.243 kb on + strand, within CA264_03240at 763.243 kb on + strand, within CA264_03240at 763.275 kb on + strand, within CA264_03240at 763.386 kb on - strand, within CA264_03240at 763.388 kb on + strand, within CA264_03240at 763.401 kb on + strand, within CA264_03240at 763.401 kb on + strand, within CA264_03240at 763.402 kb on - strand, within CA264_03240at 763.420 kb on + strand, within CA264_03240at 763.541 kb on - strand, within CA264_03240at 763.642 kb on + strand, within CA264_03240at 763.642 kb on + strand, within CA264_03240at 763.686 kb on + strand, within CA264_03240at 763.686 kb on + strand, within CA264_03240at 763.687 kb on - strand, within CA264_03240at 763.711 kb on + strand, within CA264_03240at 763.711 kb on + strand, within CA264_03240

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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760,592 + CA264_03230 0.38 +0.4
760,592 + CA264_03230 0.38 -0.3
760,708 - CA264_03230 0.47 +0.6
760,763 + CA264_03230 0.52 -0.6
760,764 - CA264_03230 0.52 +1.3
760,772 + CA264_03230 0.52 +0.3
760,781 + CA264_03230 0.53 +0.2
760,781 + CA264_03230 0.53 -0.9
760,782 - CA264_03230 0.53 -0.3
760,785 + CA264_03230 0.53 -1.0
760,786 - CA264_03230 0.53 -0.8
760,797 - CA264_03230 0.54 -0.3
760,890 + CA264_03230 0.61 -0.0
760,917 - CA264_03230 0.63 -0.2
760,956 - CA264_03230 0.66 -2.3
760,994 + CA264_03230 0.69 -2.1
760,998 + CA264_03230 0.70 -0.2
760,998 + CA264_03230 0.70 -1.0
760,998 + CA264_03230 0.70 -0.2
760,999 - CA264_03230 0.70 +0.6
761,051 + CA264_03230 0.74 -0.5
761,286 + +2.2
761,286 + -0.3
761,287 - +0.1
761,295 + -1.9
761,297 + -0.4
761,297 + -0.1
761,297 + -0.6
761,297 + -0.6
761,298 - +0.6
761,436 + -0.0
761,482 + -0.6
761,503 + +0.3
761,812 + CA264_03235 0.25 -0.9
761,812 + CA264_03235 0.25 -1.0
761,812 + CA264_03235 0.25 -1.6
762,019 + CA264_03235 0.41 -0.7
762,027 - CA264_03235 0.42 -1.4
762,077 + CA264_03235 0.46 +0.1
762,168 + CA264_03235 0.53 -0.3
762,168 + CA264_03235 0.53 -0.2
762,169 - CA264_03235 0.53 -0.6
762,196 + CA264_03235 0.55 +0.0
762,197 - CA264_03235 0.55 -0.5
762,197 - CA264_03235 0.55 -1.9
762,223 + CA264_03235 0.57 +0.1
762,223 + CA264_03235 0.57 -0.9
762,229 + CA264_03235 0.57 +0.3
762,254 + CA264_03235 0.59 -0.3
762,254 + CA264_03235 0.59 -0.3
762,254 + CA264_03235 0.59 +0.5
762,255 - CA264_03235 0.59 -0.9
762,256 + CA264_03235 0.59 -1.0
762,256 + CA264_03235 0.59 +0.0
762,257 - CA264_03235 0.59 -1.2
762,323 - CA264_03235 0.65 -1.6
762,323 - CA264_03235 0.65 -1.0
762,323 - CA264_03235 0.65 -0.6
762,345 + CA264_03235 0.66 +0.6
762,355 + CA264_03235 0.67 -1.6
762,355 + CA264_03235 0.67 -0.6
762,400 + CA264_03235 0.70 +0.3
762,400 + CA264_03235 0.70 -0.8
762,401 - CA264_03235 0.70 -0.4
762,463 + CA264_03235 0.75 -0.4
762,463 + CA264_03235 0.75 +0.5
762,463 + CA264_03235 0.75 -2.3
762,463 + CA264_03235 0.75 -1.5
762,464 - CA264_03235 0.75 -0.9
762,490 - CA264_03235 0.77 +0.4
762,531 + CA264_03235 0.80 -0.2
762,598 + CA264_03235 0.86 +0.6
762,599 - CA264_03235 0.86 -1.4
762,599 - CA264_03235 0.86 -0.0
762,599 - CA264_03235 0.86 -0.3
762,696 + +0.7
762,764 + -0.4
762,764 + +0.1
762,764 + -0.0
762,764 + -0.2
762,764 + +0.6
762,764 + -0.2
762,764 + +0.9
762,765 - -0.4
762,767 - -0.1
762,774 - -0.9
762,781 - -0.1
762,788 + +0.3
762,788 + -0.3
762,789 - -1.1
762,822 - +0.8
762,879 + -0.5
763,024 + CA264_03240 0.13 -0.0
763,025 - CA264_03240 0.13 +0.0
763,028 + CA264_03240 0.13 +0.7
763,028 + CA264_03240 0.13 -1.5
763,109 + CA264_03240 0.18 +0.1
763,109 + CA264_03240 0.18 +0.8
763,114 + CA264_03240 0.18 -0.7
763,114 + CA264_03240 0.18 -0.7
763,114 + CA264_03240 0.18 +1.7
763,196 + CA264_03240 0.22 -0.2
763,202 + CA264_03240 0.23 -1.2
763,202 + CA264_03240 0.23 +1.7
763,203 - CA264_03240 0.23 -2.2
763,203 - CA264_03240 0.23 -0.6
763,204 + CA264_03240 0.23 -0.6
763,207 + CA264_03240 0.23 -1.4
763,207 + CA264_03240 0.23 +1.3
763,207 + CA264_03240 0.23 -0.5
763,208 - CA264_03240 0.23 +1.3
763,208 - CA264_03240 0.23 +0.5
763,209 + CA264_03240 0.23 -2.0
763,210 - CA264_03240 0.23 -0.8
763,237 + CA264_03240 0.24 -1.1
763,238 - CA264_03240 0.25 -0.2
763,239 + CA264_03240 0.25 -1.1
763,243 + CA264_03240 0.25 -0.9
763,243 + CA264_03240 0.25 -0.6
763,275 + CA264_03240 0.26 -0.0
763,386 - CA264_03240 0.32 -1.0
763,388 + CA264_03240 0.32 -0.6
763,401 + CA264_03240 0.33 -1.9
763,401 + CA264_03240 0.33 +1.2
763,402 - CA264_03240 0.33 -1.9
763,420 + CA264_03240 0.34 +0.8
763,541 - CA264_03240 0.40 +0.1
763,642 + CA264_03240 0.46 -0.3
763,642 + CA264_03240 0.46 -0.5
763,686 + CA264_03240 0.48 +0.1
763,686 + CA264_03240 0.48 -0.0
763,687 - CA264_03240 0.48 -2.1
763,711 + CA264_03240 0.49 +1.6
763,711 + CA264_03240 0.49 -0.3

Or see this region's nucleotide sequence