Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03230

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03225 and CA264_03230 are separated by 77 nucleotidesCA264_03230 and CA264_03235 are separated by 86 nucleotides CA264_03225: CA264_03225 - hypothetical protein, at 758,816 to 760,012 _03225 CA264_03230: CA264_03230 - hypothetical protein, at 760,090 to 761,394 _03230 CA264_03235: CA264_03235 - hypothetical protein, at 761,481 to 762,785 _03235 Position (kb) 760 761 762Strain fitness (log2 ratio) -2 -1 0 1 2at 759.108 kb on + strand, within CA264_03225at 759.144 kb on - strand, within CA264_03225at 759.144 kb on - strand, within CA264_03225at 759.346 kb on - strand, within CA264_03225at 759.377 kb on + strand, within CA264_03225at 759.377 kb on + strand, within CA264_03225at 759.377 kb on + strand, within CA264_03225at 759.377 kb on + strand, within CA264_03225at 759.395 kb on + strand, within CA264_03225at 759.403 kb on + strand, within CA264_03225at 759.569 kb on + strand, within CA264_03225at 759.683 kb on + strand, within CA264_03225at 759.684 kb on - strand, within CA264_03225at 759.914 kb on - strandat 759.915 kb on + strandat 759.915 kb on + strandat 759.915 kb on + strandat 759.915 kb on + strandat 759.916 kb on - strandat 759.993 kb on - strandat 760.054 kb on + strandat 760.099 kb on + strandat 760.128 kb on + strandat 760.248 kb on + strand, within CA264_03230at 760.317 kb on + strand, within CA264_03230at 760.317 kb on + strand, within CA264_03230at 760.319 kb on + strand, within CA264_03230at 760.319 kb on + strand, within CA264_03230at 760.320 kb on - strand, within CA264_03230at 760.387 kb on + strand, within CA264_03230at 760.387 kb on + strand, within CA264_03230at 760.436 kb on - strand, within CA264_03230at 760.592 kb on + strand, within CA264_03230at 760.592 kb on + strand, within CA264_03230at 760.708 kb on - strand, within CA264_03230at 760.763 kb on + strand, within CA264_03230at 760.764 kb on - strand, within CA264_03230at 760.772 kb on + strand, within CA264_03230at 760.781 kb on + strand, within CA264_03230at 760.781 kb on + strand, within CA264_03230at 760.782 kb on - strand, within CA264_03230at 760.785 kb on + strand, within CA264_03230at 760.786 kb on - strand, within CA264_03230at 760.797 kb on - strand, within CA264_03230at 760.890 kb on + strand, within CA264_03230at 760.917 kb on - strand, within CA264_03230at 760.956 kb on - strand, within CA264_03230at 760.994 kb on + strand, within CA264_03230at 760.998 kb on + strand, within CA264_03230at 760.998 kb on + strand, within CA264_03230at 760.998 kb on + strand, within CA264_03230at 760.999 kb on - strand, within CA264_03230at 761.051 kb on + strand, within CA264_03230at 761.286 kb on + strandat 761.286 kb on + strandat 761.287 kb on - strandat 761.295 kb on + strandat 761.297 kb on + strandat 761.297 kb on + strandat 761.297 kb on + strandat 761.297 kb on + strandat 761.298 kb on - strandat 761.436 kb on + strandat 761.482 kb on + strandat 761.503 kb on + strandat 761.812 kb on + strand, within CA264_03235at 761.812 kb on + strand, within CA264_03235at 761.812 kb on + strand, within CA264_03235at 762.019 kb on + strand, within CA264_03235at 762.027 kb on - strand, within CA264_03235at 762.077 kb on + strand, within CA264_03235at 762.168 kb on + strand, within CA264_03235at 762.168 kb on + strand, within CA264_03235at 762.169 kb on - strand, within CA264_03235at 762.196 kb on + strand, within CA264_03235at 762.197 kb on - strand, within CA264_03235at 762.197 kb on - strand, within CA264_03235at 762.223 kb on + strand, within CA264_03235at 762.223 kb on + strand, within CA264_03235at 762.229 kb on + strand, within CA264_03235at 762.254 kb on + strand, within CA264_03235at 762.254 kb on + strand, within CA264_03235at 762.254 kb on + strand, within CA264_03235at 762.255 kb on - strand, within CA264_03235at 762.256 kb on + strand, within CA264_03235at 762.256 kb on + strand, within CA264_03235at 762.257 kb on - strand, within CA264_03235at 762.323 kb on - strand, within CA264_03235at 762.323 kb on - strand, within CA264_03235at 762.323 kb on - strand, within CA264_03235at 762.345 kb on + strand, within CA264_03235at 762.355 kb on + strand, within CA264_03235at 762.355 kb on + strand, within CA264_03235

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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759,108 + CA264_03225 0.24 +0.8
759,144 - CA264_03225 0.27 +1.3
759,144 - CA264_03225 0.27 -1.1
759,346 - CA264_03225 0.44 -0.0
759,377 + CA264_03225 0.47 +0.6
759,377 + CA264_03225 0.47 -0.1
759,377 + CA264_03225 0.47 +0.7
759,377 + CA264_03225 0.47 -1.4
759,395 + CA264_03225 0.48 +2.4
759,403 + CA264_03225 0.49 -0.5
759,569 + CA264_03225 0.63 -0.9
759,683 + CA264_03225 0.72 -1.5
759,684 - CA264_03225 0.73 -1.4
759,914 - -1.9
759,915 + -0.6
759,915 + -0.3
759,915 + +0.4
759,915 + -0.2
759,916 - -0.7
759,993 - +0.1
760,054 + +0.4
760,099 + -0.8
760,128 + -1.1
760,248 + CA264_03230 0.12 -0.2
760,317 + CA264_03230 0.17 +0.9
760,317 + CA264_03230 0.17 +0.4
760,319 + CA264_03230 0.18 -0.9
760,319 + CA264_03230 0.18 -1.7
760,320 - CA264_03230 0.18 -2.0
760,387 + CA264_03230 0.23 -0.3
760,387 + CA264_03230 0.23 +1.1
760,436 - CA264_03230 0.27 -0.5
760,592 + CA264_03230 0.38 +0.4
760,592 + CA264_03230 0.38 -0.3
760,708 - CA264_03230 0.47 +0.6
760,763 + CA264_03230 0.52 -0.6
760,764 - CA264_03230 0.52 +1.3
760,772 + CA264_03230 0.52 +0.3
760,781 + CA264_03230 0.53 +0.2
760,781 + CA264_03230 0.53 -0.9
760,782 - CA264_03230 0.53 -0.3
760,785 + CA264_03230 0.53 -1.0
760,786 - CA264_03230 0.53 -0.8
760,797 - CA264_03230 0.54 -0.3
760,890 + CA264_03230 0.61 -0.0
760,917 - CA264_03230 0.63 -0.2
760,956 - CA264_03230 0.66 -2.3
760,994 + CA264_03230 0.69 -2.1
760,998 + CA264_03230 0.70 -0.2
760,998 + CA264_03230 0.70 -1.0
760,998 + CA264_03230 0.70 -0.2
760,999 - CA264_03230 0.70 +0.6
761,051 + CA264_03230 0.74 -0.5
761,286 + +2.2
761,286 + -0.3
761,287 - +0.1
761,295 + -1.9
761,297 + -0.4
761,297 + -0.1
761,297 + -0.6
761,297 + -0.6
761,298 - +0.6
761,436 + -0.0
761,482 + -0.6
761,503 + +0.3
761,812 + CA264_03235 0.25 -0.9
761,812 + CA264_03235 0.25 -1.0
761,812 + CA264_03235 0.25 -1.6
762,019 + CA264_03235 0.41 -0.7
762,027 - CA264_03235 0.42 -1.4
762,077 + CA264_03235 0.46 +0.1
762,168 + CA264_03235 0.53 -0.3
762,168 + CA264_03235 0.53 -0.2
762,169 - CA264_03235 0.53 -0.6
762,196 + CA264_03235 0.55 +0.0
762,197 - CA264_03235 0.55 -0.5
762,197 - CA264_03235 0.55 -1.9
762,223 + CA264_03235 0.57 +0.1
762,223 + CA264_03235 0.57 -0.9
762,229 + CA264_03235 0.57 +0.3
762,254 + CA264_03235 0.59 -0.3
762,254 + CA264_03235 0.59 -0.3
762,254 + CA264_03235 0.59 +0.5
762,255 - CA264_03235 0.59 -0.9
762,256 + CA264_03235 0.59 -1.0
762,256 + CA264_03235 0.59 +0.0
762,257 - CA264_03235 0.59 -1.2
762,323 - CA264_03235 0.65 -1.6
762,323 - CA264_03235 0.65 -1.0
762,323 - CA264_03235 0.65 -0.6
762,345 + CA264_03235 0.66 +0.6
762,355 + CA264_03235 0.67 -1.6
762,355 + CA264_03235 0.67 -0.6

Or see this region's nucleotide sequence