Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02420

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02410 and CA264_02415 are separated by 151 nucleotidesCA264_02415 and CA264_02420 overlap by 4 nucleotidesCA264_02420 and CA264_02425 are separated by 75 nucleotides CA264_02410: CA264_02410 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 561,462 to 562,778 _02410 CA264_02415: CA264_02415 - dethiobiotin synthase, at 562,930 to 563,544 _02415 CA264_02420: CA264_02420 - 8-amino-7-oxononanoate synthase, at 563,541 to 564,671 _02420 CA264_02425: CA264_02425 - biotin synthase BioB, at 564,747 to 565,748 _02425 Position (kb) 563 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 562.569 kb on + strand, within CA264_02410at 562.570 kb on - strand, within CA264_02410at 562.597 kb on + strand, within CA264_02410at 562.597 kb on + strand, within CA264_02410at 562.624 kb on - strand, within CA264_02410at 562.733 kb on + strandat 562.735 kb on + strandat 562.749 kb on - strandat 562.795 kb on + strandat 562.828 kb on - strandat 562.837 kb on + strandat 562.838 kb on - strandat 562.838 kb on - strandat 562.869 kb on - strandat 562.885 kb on + strandat 562.885 kb on + strandat 562.889 kb on + strandat 562.889 kb on + strandat 562.890 kb on - strandat 562.890 kb on - strandat 562.916 kb on + strandat 562.932 kb on - strandat 562.937 kb on + strandat 562.937 kb on + strandat 562.937 kb on + strandat 562.944 kb on + strandat 563.151 kb on - strand, within CA264_02415at 563.357 kb on + strand, within CA264_02415at 563.358 kb on - strand, within CA264_02415at 563.482 kb on + strand, within CA264_02415at 563.483 kb on - strandat 563.483 kb on - strandat 563.527 kb on + strandat 563.546 kb on + strandat 563.591 kb on + strandat 563.648 kb on + strandat 563.736 kb on + strand, within CA264_02420at 563.791 kb on + strand, within CA264_02420at 563.792 kb on - strand, within CA264_02420at 563.796 kb on + strand, within CA264_02420at 563.796 kb on + strand, within CA264_02420at 563.797 kb on - strand, within CA264_02420at 563.797 kb on - strand, within CA264_02420at 563.847 kb on + strand, within CA264_02420at 563.852 kb on + strand, within CA264_02420at 563.852 kb on + strand, within CA264_02420at 563.853 kb on - strand, within CA264_02420at 563.854 kb on + strand, within CA264_02420at 563.855 kb on - strand, within CA264_02420at 563.900 kb on + strand, within CA264_02420at 563.901 kb on - strand, within CA264_02420at 563.902 kb on + strand, within CA264_02420at 563.921 kb on - strand, within CA264_02420at 563.992 kb on + strand, within CA264_02420at 563.993 kb on - strand, within CA264_02420at 564.183 kb on + strand, within CA264_02420at 564.187 kb on + strand, within CA264_02420at 564.187 kb on + strand, within CA264_02420at 564.187 kb on + strand, within CA264_02420at 564.188 kb on - strand, within CA264_02420at 564.188 kb on - strand, within CA264_02420at 564.188 kb on - strand, within CA264_02420at 564.188 kb on - strand, within CA264_02420at 564.188 kb on - strand, within CA264_02420at 564.189 kb on + strand, within CA264_02420at 564.189 kb on + strand, within CA264_02420at 564.370 kb on + strand, within CA264_02420at 564.459 kb on + strand, within CA264_02420at 564.498 kb on - strand, within CA264_02420at 564.499 kb on + strand, within CA264_02420at 564.499 kb on + strand, within CA264_02420at 564.500 kb on - strand, within CA264_02420at 564.560 kb on - strandat 564.665 kb on + strandat 564.665 kb on + strandat 564.665 kb on + strandat 564.665 kb on + strandat 564.671 kb on + strandat 564.671 kb on + strandat 564.712 kb on + strandat 564.712 kb on + strandat 564.728 kb on - strandat 564.745 kb on - strandat 564.748 kb on + strandat 564.748 kb on + strandat 564.749 kb on - strandat 564.788 kb on + strandat 564.789 kb on - strandat 564.789 kb on - strandat 565.094 kb on + strand, within CA264_02425at 565.095 kb on + strand, within CA264_02425at 565.095 kb on - strand, within CA264_02425at 565.098 kb on + strand, within CA264_02425at 565.098 kb on + strand, within CA264_02425at 565.103 kb on + strand, within CA264_02425at 565.103 kb on + strand, within CA264_02425at 565.119 kb on - strand, within CA264_02425at 565.119 kb on - strand, within CA264_02425at 565.151 kb on + strand, within CA264_02425at 565.172 kb on + strand, within CA264_02425at 565.203 kb on - strand, within CA264_02425at 565.216 kb on + strand, within CA264_02425at 565.216 kb on + strand, within CA264_02425at 565.232 kb on + strand, within CA264_02425at 565.232 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.243 kb on + strand, within CA264_02425at 565.338 kb on - strand, within CA264_02425at 565.508 kb on + strand, within CA264_02425at 565.527 kb on - strand, within CA264_02425at 565.527 kb on - strand, within CA264_02425at 565.583 kb on + strand, within CA264_02425at 565.599 kb on - strand, within CA264_02425at 565.599 kb on - strand, within CA264_02425at 565.602 kb on + strand, within CA264_02425at 565.603 kb on - strand, within CA264_02425at 565.638 kb on + strand, within CA264_02425at 565.639 kb on - strand, within CA264_02425

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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562,569 + CA264_02410 0.84 -0.9
562,570 - CA264_02410 0.84 +1.0
562,597 + CA264_02410 0.86 +2.2
562,597 + CA264_02410 0.86 -0.4
562,624 - CA264_02410 0.88 -1.3
562,733 + -0.1
562,735 + +1.2
562,749 - +0.6
562,795 + -1.2
562,828 - -0.2
562,837 + +0.4
562,838 - -1.0
562,838 - +0.6
562,869 - +1.1
562,885 + +1.0
562,885 + -1.3
562,889 + +0.9
562,889 + -0.1
562,890 - -0.7
562,890 - +0.2
562,916 + +0.8
562,932 - -1.7
562,937 + -1.5
562,937 + -2.0
562,937 + -0.0
562,944 + -3.1
563,151 - CA264_02415 0.36 +0.1
563,357 + CA264_02415 0.69 +0.4
563,358 - CA264_02415 0.70 -0.7
563,482 + CA264_02415 0.90 +0.4
563,483 - +0.1
563,483 - +0.3
563,527 + -0.8
563,546 + +0.0
563,591 + -0.5
563,648 + +0.4
563,736 + CA264_02420 0.17 -0.2
563,791 + CA264_02420 0.22 -2.1
563,792 - CA264_02420 0.22 -0.6
563,796 + CA264_02420 0.23 -1.1
563,796 + CA264_02420 0.23 -1.4
563,797 - CA264_02420 0.23 -1.4
563,797 - CA264_02420 0.23 -1.3
563,847 + CA264_02420 0.27 -1.3
563,852 + CA264_02420 0.27 -0.8
563,852 + CA264_02420 0.27 -0.7
563,853 - CA264_02420 0.28 -0.3
563,854 + CA264_02420 0.28 +0.8
563,855 - CA264_02420 0.28 -1.3
563,900 + CA264_02420 0.32 -3.1
563,901 - CA264_02420 0.32 -1.7
563,902 + CA264_02420 0.32 -0.7
563,921 - CA264_02420 0.34 -0.1
563,992 + CA264_02420 0.40 -0.4
563,993 - CA264_02420 0.40 -0.5
564,183 + CA264_02420 0.57 -0.2
564,187 + CA264_02420 0.57 -0.0
564,187 + CA264_02420 0.57 -0.6
564,187 + CA264_02420 0.57 +0.9
564,188 - CA264_02420 0.57 -0.4
564,188 - CA264_02420 0.57 -1.6
564,188 - CA264_02420 0.57 -0.4
564,188 - CA264_02420 0.57 -0.5
564,188 - CA264_02420 0.57 -0.8
564,189 + CA264_02420 0.57 -1.4
564,189 + CA264_02420 0.57 -0.4
564,370 + CA264_02420 0.73 -0.7
564,459 + CA264_02420 0.81 -0.3
564,498 - CA264_02420 0.85 -0.2
564,499 + CA264_02420 0.85 +0.2
564,499 + CA264_02420 0.85 -0.4
564,500 - CA264_02420 0.85 -0.3
564,560 - +0.1
564,665 + -0.8
564,665 + -2.0
564,665 + -0.4
564,665 + -1.0
564,671 + -0.0
564,671 + -0.7
564,712 + +0.5
564,712 + +0.8
564,728 - -0.5
564,745 - -0.4
564,748 + +0.1
564,748 + +0.5
564,749 - +1.3
564,788 + +2.2
564,789 - -0.5
564,789 - -1.2
565,094 + CA264_02425 0.35 -0.2
565,095 + CA264_02425 0.35 -2.8
565,095 - CA264_02425 0.35 -2.2
565,098 + CA264_02425 0.35 +0.6
565,098 + CA264_02425 0.35 -1.7
565,103 + CA264_02425 0.36 -0.0
565,103 + CA264_02425 0.36 +1.8
565,119 - CA264_02425 0.37 -1.1
565,119 - CA264_02425 0.37 -0.6
565,151 + CA264_02425 0.40 -0.3
565,172 + CA264_02425 0.42 -0.2
565,203 - CA264_02425 0.46 -1.4
565,216 + CA264_02425 0.47 -2.1
565,216 + CA264_02425 0.47 +0.6
565,232 + CA264_02425 0.48 -0.4
565,232 + CA264_02425 0.48 -0.8
565,243 + CA264_02425 0.50 +0.0
565,243 + CA264_02425 0.50 -1.4
565,243 + CA264_02425 0.50 +0.2
565,243 + CA264_02425 0.50 -0.4
565,243 + CA264_02425 0.50 -0.4
565,338 - CA264_02425 0.59 -0.7
565,508 + CA264_02425 0.76 -0.2
565,527 - CA264_02425 0.78 +0.6
565,527 - CA264_02425 0.78 -0.6
565,583 + CA264_02425 0.83 -1.1
565,599 - CA264_02425 0.85 -0.3
565,599 - CA264_02425 0.85 -0.5
565,602 + CA264_02425 0.85 +0.3
565,603 - CA264_02425 0.85 -1.3
565,638 + CA264_02425 0.89 +1.2
565,639 - CA264_02425 0.89 +2.1

Or see this region's nucleotide sequence