Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02380 and CA264_02385 are separated by 212 nucleotides CA264_02385 and CA264_02390 are separated by 72 nucleotides CA264_02390 and CA264_02395 overlap by 8 nucleotides
CA264_02380: CA264_02380 - homoserine dehydrogenase, at 550,252 to 551,511
_02380
CA264_02385: CA264_02385 - hypothetical protein, at 551,724 to 552,410
_02385
CA264_02390: CA264_02390 - diaminopimelate decarboxylase, at 552,483 to 553,625
_02390
CA264_02395: CA264_02395 - aspartate kinase, at 553,618 to 554,949
_02395
Position (kb) 552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2 at 551.537 kb on - strand at 551.564 kb on - strand at 551.568 kb on - strand at 551.574 kb on - strand at 551.672 kb on - strand at 551.695 kb on + strand at 551.695 kb on + strand at 551.696 kb on - strand at 551.771 kb on - strand at 551.792 kb on + strand at 551.793 kb on - strand, within CA264_02385 at 551.793 kb on - strand, within CA264_02385 at 551.829 kb on - strand, within CA264_02385 at 551.836 kb on - strand, within CA264_02385 at 551.837 kb on + strand, within CA264_02385 at 551.837 kb on + strand, within CA264_02385 at 551.841 kb on + strand, within CA264_02385 at 551.841 kb on + strand, within CA264_02385 at 551.842 kb on - strand, within CA264_02385 at 551.842 kb on - strand, within CA264_02385 at 551.842 kb on - strand, within CA264_02385 at 551.847 kb on + strand, within CA264_02385 at 551.953 kb on - strand, within CA264_02385 at 551.954 kb on + strand, within CA264_02385 at 552.085 kb on + strand, within CA264_02385 at 552.086 kb on - strand, within CA264_02385 at 552.086 kb on - strand, within CA264_02385 at 552.090 kb on + strand, within CA264_02385 at 552.090 kb on + strand, within CA264_02385 at 552.091 kb on - strand, within CA264_02385 at 552.152 kb on - strand, within CA264_02385 at 552.152 kb on - strand, within CA264_02385 at 552.294 kb on + strand, within CA264_02385 at 552.414 kb on - strand at 552.414 kb on - strand at 552.468 kb on + strand at 552.470 kb on + strand at 552.490 kb on + strand at 552.490 kb on + strand at 552.521 kb on - strand at 552.688 kb on - strand, within CA264_02390 at 552.720 kb on + strand, within CA264_02390 at 552.781 kb on + strand, within CA264_02390 at 552.932 kb on - strand, within CA264_02390 at 552.932 kb on - strand, within CA264_02390 at 552.932 kb on - strand, within CA264_02390 at 553.014 kb on + strand, within CA264_02390 at 553.022 kb on + strand, within CA264_02390 at 553.035 kb on - strand, within CA264_02390 at 553.102 kb on - strand, within CA264_02390 at 553.183 kb on + strand, within CA264_02390 at 553.184 kb on - strand, within CA264_02390 at 553.184 kb on - strand, within CA264_02390 at 553.187 kb on + strand, within CA264_02390 at 553.188 kb on - strand, within CA264_02390 at 553.287 kb on - strand, within CA264_02390 at 553.333 kb on - strand, within CA264_02390 at 553.495 kb on + strand, within CA264_02390 at 553.571 kb on - strand at 553.586 kb on + strand at 553.620 kb on - strand at 553.693 kb on - strand at 553.696 kb on + strand at 553.697 kb on - strand at 553.801 kb on - strand, within CA264_02395 at 553.821 kb on + strand, within CA264_02395 at 553.821 kb on + strand, within CA264_02395 at 553.822 kb on - strand, within CA264_02395 at 553.840 kb on + strand, within CA264_02395 at 553.847 kb on - strand, within CA264_02395 at 553.874 kb on - strand, within CA264_02395 at 553.893 kb on + strand, within CA264_02395 at 553.894 kb on - strand, within CA264_02395 at 554.056 kb on + strand, within CA264_02395 at 554.057 kb on - strand, within CA264_02395 at 554.206 kb on + strand, within CA264_02395 at 554.258 kb on - strand, within CA264_02395 at 554.352 kb on - strand, within CA264_02395 at 554.408 kb on + strand, within CA264_02395 at 554.409 kb on - strand, within CA264_02395 at 554.409 kb on - strand, within CA264_02395 at 554.477 kb on + strand, within CA264_02395 at 554.477 kb on + strand, within CA264_02395 at 554.478 kb on - strand, within CA264_02395 at 554.565 kb on - strand, within CA264_02395
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 551,537 - -0.2 551,564 - -1.4 551,568 - -1.5 551,574 - +0.2 551,672 - -0.4 551,695 + +0.3 551,695 + -0.9 551,696 - -0.5 551,771 - +1.2 551,792 + +1.0 551,793 - CA264_02385 0.10 +0.5 551,793 - CA264_02385 0.10 -0.7 551,829 - CA264_02385 0.15 -0.0 551,836 - CA264_02385 0.16 -0.8 551,837 + CA264_02385 0.16 +0.6 551,837 + CA264_02385 0.16 +0.4 551,841 + CA264_02385 0.17 +0.1 551,841 + CA264_02385 0.17 -0.2 551,842 - CA264_02385 0.17 +1.0 551,842 - CA264_02385 0.17 -0.4 551,842 - CA264_02385 0.17 +0.2 551,847 + CA264_02385 0.18 -0.1 551,953 - CA264_02385 0.33 -0.0 551,954 + CA264_02385 0.33 -0.6 552,085 + CA264_02385 0.53 -1.5 552,086 - CA264_02385 0.53 +1.6 552,086 - CA264_02385 0.53 -0.4 552,090 + CA264_02385 0.53 -0.9 552,090 + CA264_02385 0.53 -0.4 552,091 - CA264_02385 0.53 -1.3 552,152 - CA264_02385 0.62 -1.8 552,152 - CA264_02385 0.62 -0.8 552,294 + CA264_02385 0.83 -0.6 552,414 - +0.5 552,414 - -1.9 552,468 + -0.6 552,470 + -0.8 552,490 + +0.0 552,490 + -0.2 552,521 - -1.1 552,688 - CA264_02390 0.18 +0.4 552,720 + CA264_02390 0.21 -0.1 552,781 + CA264_02390 0.26 -0.2 552,932 - CA264_02390 0.39 -0.3 552,932 - CA264_02390 0.39 -1.6 552,932 - CA264_02390 0.39 -0.9 553,014 + CA264_02390 0.46 +0.0 553,022 + CA264_02390 0.47 -0.9 553,035 - CA264_02390 0.48 -0.6 553,102 - CA264_02390 0.54 +1.5 553,183 + CA264_02390 0.61 -1.1 553,184 - CA264_02390 0.61 -0.3 553,184 - CA264_02390 0.61 -0.5 553,187 + CA264_02390 0.62 +0.6 553,188 - CA264_02390 0.62 +0.0 553,287 - CA264_02390 0.70 -0.3 553,333 - CA264_02390 0.74 -0.1 553,495 + CA264_02390 0.89 -0.2 553,571 - -1.3 553,586 + -0.2 553,620 - +0.3 553,693 - +2.3 553,696 + +0.0 553,697 - -1.6 553,801 - CA264_02395 0.14 -1.2 553,821 + CA264_02395 0.15 -0.2 553,821 + CA264_02395 0.15 +0.3 553,822 - CA264_02395 0.15 +1.4 553,840 + CA264_02395 0.17 -0.7 553,847 - CA264_02395 0.17 -0.0 553,874 - CA264_02395 0.19 -0.6 553,893 + CA264_02395 0.21 +0.6 553,894 - CA264_02395 0.21 -0.1 554,056 + CA264_02395 0.33 -0.4 554,057 - CA264_02395 0.33 -1.1 554,206 + CA264_02395 0.44 -0.7 554,258 - CA264_02395 0.48 -0.1 554,352 - CA264_02395 0.55 -0.6 554,408 + CA264_02395 0.59 +0.1 554,409 - CA264_02395 0.59 -0.4 554,409 - CA264_02395 0.59 +0.1 554,477 + CA264_02395 0.64 -0.3 554,477 + CA264_02395 0.64 +0.4 554,478 - CA264_02395 0.65 +1.1 554,565 - CA264_02395 0.71 -0.7
Or see this region's nucleotide sequence