Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02005

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02000 and CA264_02005 are separated by 150 nucleotidesCA264_02005 and CA264_02010 are separated by 158 nucleotidesCA264_02010 and CA264_02015 are separated by 161 nucleotides CA264_02000: CA264_02000 - short chain dehydrogenase, at 460,586 to 461,395 _02000 CA264_02005: CA264_02005 - 23S rRNA (uracil-5-)-methyltransferase RumA, at 461,546 to 462,958 _02005 CA264_02010: CA264_02010 - hypothetical protein, at 463,117 to 463,485 _02010 CA264_02015: CA264_02015 - thiamine-phosphate kinase, at 463,647 to 464,672 _02015 Position (kb) 461 462 463Strain fitness (log2 ratio) -2 -1 0 1at 460.587 kb on + strandat 460.588 kb on - strandat 460.588 kb on - strandat 460.588 kb on - strandat 460.588 kb on - strandat 460.588 kb on - strandat 461.481 kb on + strandat 461.481 kb on + strandat 461.481 kb on + strandat 461.482 kb on - strandat 461.482 kb on - strandat 461.484 kb on - strandat 461.484 kb on - strandat 461.514 kb on - strandat 461.554 kb on + strandat 461.652 kb on + strandat 461.806 kb on + strand, within CA264_02005at 461.806 kb on + strand, within CA264_02005at 461.807 kb on - strand, within CA264_02005at 461.807 kb on - strand, within CA264_02005at 461.959 kb on + strand, within CA264_02005at 462.058 kb on + strand, within CA264_02005at 462.084 kb on - strand, within CA264_02005at 462.182 kb on + strand, within CA264_02005at 462.184 kb on + strand, within CA264_02005at 462.212 kb on - strand, within CA264_02005at 462.245 kb on + strand, within CA264_02005at 462.245 kb on + strand, within CA264_02005at 462.379 kb on + strand, within CA264_02005at 462.392 kb on + strand, within CA264_02005at 462.393 kb on - strand, within CA264_02005at 462.393 kb on - strand, within CA264_02005at 462.436 kb on + strand, within CA264_02005at 462.437 kb on - strand, within CA264_02005at 462.471 kb on - strand, within CA264_02005at 462.525 kb on + strand, within CA264_02005at 462.528 kb on - strand, within CA264_02005at 462.528 kb on - strand, within CA264_02005at 462.536 kb on + strand, within CA264_02005at 462.559 kb on + strand, within CA264_02005at 462.588 kb on + strand, within CA264_02005at 462.602 kb on + strand, within CA264_02005at 462.603 kb on - strand, within CA264_02005at 462.672 kb on - strand, within CA264_02005at 462.876 kb on - strandat 462.876 kb on - strandat 462.882 kb on + strandat 462.937 kb on - strandat 462.937 kb on - strandat 462.939 kb on + strandat 462.939 kb on + strandat 462.940 kb on - strandat 462.940 kb on - strandat 462.940 kb on - strandat 462.952 kb on + strandat 462.952 kb on + strandat 462.953 kb on - strandat 462.956 kb on + strandat 462.956 kb on + strandat 462.956 kb on + strandat 462.957 kb on - strandat 462.977 kb on - strandat 462.977 kb on - strandat 463.037 kb on - strandat 463.037 kb on - strandat 463.096 kb on + strandat 463.097 kb on - strandat 463.143 kb on + strandat 463.320 kb on + strand, within CA264_02010at 463.323 kb on + strand, within CA264_02010at 463.324 kb on - strand, within CA264_02010at 463.324 kb on - strand, within CA264_02010at 463.334 kb on - strand, within CA264_02010at 463.348 kb on - strand, within CA264_02010at 463.349 kb on + strand, within CA264_02010at 463.389 kb on + strand, within CA264_02010at 463.390 kb on - strand, within CA264_02010at 463.400 kb on - strand, within CA264_02010at 463.401 kb on + strand, within CA264_02010at 463.465 kb on - strandat 463.505 kb on - strandat 463.515 kb on + strandat 463.516 kb on - strandat 463.537 kb on + strandat 463.537 kb on + strandat 463.541 kb on + strandat 463.542 kb on - strandat 463.542 kb on - strandat 463.561 kb on - strandat 463.561 kb on - strandat 463.563 kb on + strandat 463.563 kb on + strandat 463.564 kb on - strandat 463.564 kb on - strandat 463.564 kb on - strandat 463.603 kb on + strandat 463.611 kb on + strandat 463.611 kb on + strandat 463.612 kb on - strandat 463.622 kb on - strandat 463.622 kb on - strandat 463.631 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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460,587 + -2.1
460,588 - -0.4
460,588 - +0.7
460,588 - +0.8
460,588 - -0.6
460,588 - -1.8
461,481 + +0.6
461,481 + -0.7
461,481 + -0.0
461,482 - +0.7
461,482 - +0.2
461,484 - -0.3
461,484 - +0.3
461,514 - -1.7
461,554 + -0.0
461,652 + +0.6
461,806 + CA264_02005 0.18 +1.1
461,806 + CA264_02005 0.18 -0.4
461,807 - CA264_02005 0.18 -2.0
461,807 - CA264_02005 0.18 +0.3
461,959 + CA264_02005 0.29 -0.3
462,058 + CA264_02005 0.36 -0.1
462,084 - CA264_02005 0.38 +0.5
462,182 + CA264_02005 0.45 -0.3
462,184 + CA264_02005 0.45 -0.3
462,212 - CA264_02005 0.47 +1.0
462,245 + CA264_02005 0.49 +0.9
462,245 + CA264_02005 0.49 -1.4
462,379 + CA264_02005 0.59 +0.4
462,392 + CA264_02005 0.60 +0.2
462,393 - CA264_02005 0.60 +0.5
462,393 - CA264_02005 0.60 -1.1
462,436 + CA264_02005 0.63 +0.3
462,437 - CA264_02005 0.63 +1.3
462,471 - CA264_02005 0.65 -0.2
462,525 + CA264_02005 0.69 +0.3
462,528 - CA264_02005 0.69 +1.3
462,528 - CA264_02005 0.69 -1.2
462,536 + CA264_02005 0.70 +0.7
462,559 + CA264_02005 0.72 +1.6
462,588 + CA264_02005 0.74 +1.3
462,602 + CA264_02005 0.75 -0.9
462,603 - CA264_02005 0.75 -1.0
462,672 - CA264_02005 0.80 +0.1
462,876 - -1.4
462,876 - +1.0
462,882 + -0.1
462,937 - +0.1
462,937 - -0.5
462,939 + +0.3
462,939 + +0.5
462,940 - -0.4
462,940 - -1.1
462,940 - -1.8
462,952 + +1.0
462,952 + +0.3
462,953 - -0.3
462,956 + -1.9
462,956 + +0.3
462,956 + +0.0
462,957 - +0.1
462,977 - -0.0
462,977 - -0.2
463,037 - +0.1
463,037 - -1.0
463,096 + -0.5
463,097 - -1.7
463,143 + +0.1
463,320 + CA264_02010 0.55 +0.7
463,323 + CA264_02010 0.56 +0.1
463,324 - CA264_02010 0.56 +0.5
463,324 - CA264_02010 0.56 -0.1
463,334 - CA264_02010 0.59 -0.7
463,348 - CA264_02010 0.63 -2.3
463,349 + CA264_02010 0.63 -0.4
463,389 + CA264_02010 0.74 +0.7
463,390 - CA264_02010 0.74 +0.4
463,400 - CA264_02010 0.77 -0.7
463,401 + CA264_02010 0.77 -0.2
463,465 - -0.0
463,505 - -0.2
463,515 + -0.4
463,516 - -1.7
463,537 + +0.6
463,537 + -0.4
463,541 + +1.1
463,542 - +0.3
463,542 - +0.5
463,561 - -1.0
463,561 - +0.9
463,563 + -1.0
463,563 + -1.0
463,564 - -0.1
463,564 - -0.1
463,564 - +0.7
463,603 + -1.0
463,611 + -0.2
463,611 + -0.4
463,612 - +0.3
463,622 - -0.5
463,622 - -0.1
463,631 + -0.9

Or see this region's nucleotide sequence