Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01695

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01685 and CA264_01690 are separated by 206 nucleotidesCA264_01690 and CA264_01695 are separated by 15 nucleotidesCA264_01695 and CA264_01700 are separated by 26 nucleotidesCA264_01700 and CA264_01705 are separated by 157 nucleotides CA264_01685: CA264_01685 - glutamate racemase, at 395,611 to 396,426 _01685 CA264_01690: CA264_01690 - hypothetical protein, at 396,633 to 397,178 _01690 CA264_01695: CA264_01695 - glutathionylspermidine synthase, at 397,194 to 398,372 _01695 CA264_01700: CA264_01700 - type I methionyl aminopeptidase, at 398,399 to 399,157 _01700 CA264_01705: CA264_01705 - NADH-quinone oxidoreductase subunit H, at 399,315 to 400,418 _01705 Position (kb) 397 398 399Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 396.435 kb on + strandat 396.435 kb on + strandat 396.436 kb on - strandat 396.453 kb on - strandat 396.473 kb on - strandat 396.494 kb on - strandat 396.521 kb on - strandat 396.538 kb on + strandat 396.542 kb on - strandat 396.576 kb on - strandat 396.583 kb on + strandat 396.584 kb on - strandat 396.608 kb on + strandat 396.680 kb on + strandat 396.820 kb on + strand, within CA264_01690at 396.863 kb on - strand, within CA264_01690at 396.863 kb on - strand, within CA264_01690at 396.871 kb on - strand, within CA264_01690at 397.006 kb on - strand, within CA264_01690at 397.008 kb on - strand, within CA264_01690at 397.020 kb on - strand, within CA264_01690at 397.042 kb on - strand, within CA264_01690at 397.042 kb on - strand, within CA264_01690at 397.044 kb on + strand, within CA264_01690at 397.044 kb on + strand, within CA264_01690at 397.070 kb on + strand, within CA264_01690at 397.094 kb on - strand, within CA264_01690at 397.101 kb on + strand, within CA264_01690at 397.176 kb on + strandat 397.189 kb on + strandat 397.189 kb on + strandat 397.190 kb on - strandat 397.240 kb on + strandat 397.241 kb on - strandat 397.299 kb on + strandat 397.516 kb on + strand, within CA264_01695at 397.516 kb on + strand, within CA264_01695at 397.571 kb on + strand, within CA264_01695at 397.571 kb on + strand, within CA264_01695at 397.571 kb on + strand, within CA264_01695at 397.572 kb on - strand, within CA264_01695at 397.572 kb on - strand, within CA264_01695at 397.572 kb on - strand, within CA264_01695at 397.573 kb on + strand, within CA264_01695at 397.573 kb on + strand, within CA264_01695at 397.718 kb on - strand, within CA264_01695at 397.725 kb on + strand, within CA264_01695at 397.725 kb on + strand, within CA264_01695at 397.725 kb on + strand, within CA264_01695at 397.754 kb on + strand, within CA264_01695at 397.766 kb on + strand, within CA264_01695at 397.768 kb on + strand, within CA264_01695at 397.768 kb on + strand, within CA264_01695at 397.769 kb on - strand, within CA264_01695at 397.825 kb on + strand, within CA264_01695at 397.826 kb on - strand, within CA264_01695at 397.870 kb on + strand, within CA264_01695at 397.870 kb on + strand, within CA264_01695at 397.870 kb on + strand, within CA264_01695at 397.870 kb on + strand, within CA264_01695at 397.875 kb on - strand, within CA264_01695at 397.907 kb on + strand, within CA264_01695at 397.908 kb on - strand, within CA264_01695at 397.994 kb on - strand, within CA264_01695at 398.010 kb on + strand, within CA264_01695at 398.011 kb on - strand, within CA264_01695at 398.012 kb on + strand, within CA264_01695at 398.012 kb on + strand, within CA264_01695at 398.061 kb on + strand, within CA264_01695at 398.068 kb on - strand, within CA264_01695at 398.115 kb on + strand, within CA264_01695at 398.116 kb on - strandat 398.131 kb on - strand, within CA264_01695at 398.131 kb on - strand, within CA264_01695at 398.131 kb on - strand, within CA264_01695at 398.161 kb on + strand, within CA264_01695at 398.188 kb on + strand, within CA264_01695at 398.199 kb on + strand, within CA264_01695at 398.199 kb on + strand, within CA264_01695at 398.219 kb on - strand, within CA264_01695at 398.327 kb on + strandat 398.328 kb on - strandat 398.328 kb on - strandat 398.331 kb on - strandat 398.337 kb on - strandat 398.371 kb on - strandat 398.406 kb on + strandat 398.406 kb on + strandat 398.483 kb on + strand, within CA264_01700at 398.483 kb on + strand, within CA264_01700at 398.484 kb on - strand, within CA264_01700at 398.493 kb on + strand, within CA264_01700at 398.493 kb on + strand, within CA264_01700at 398.493 kb on + strand, within CA264_01700at 398.493 kb on + strand, within CA264_01700at 398.493 kb on + strand, within CA264_01700at 398.493 kb on + strand, within CA264_01700at 398.494 kb on - strand, within CA264_01700at 398.494 kb on - strand, within CA264_01700at 398.498 kb on - strand, within CA264_01700at 398.506 kb on + strand, within CA264_01700at 398.593 kb on + strand, within CA264_01700at 398.594 kb on - strand, within CA264_01700at 398.594 kb on - strand, within CA264_01700at 398.630 kb on - strand, within CA264_01700at 398.694 kb on + strand, within CA264_01700at 398.695 kb on - strand, within CA264_01700at 398.695 kb on - strand, within CA264_01700at 398.695 kb on - strand, within CA264_01700at 398.695 kb on - strand, within CA264_01700at 398.729 kb on - strand, within CA264_01700at 398.861 kb on - strand, within CA264_01700at 398.880 kb on + strand, within CA264_01700at 398.881 kb on - strand, within CA264_01700at 398.884 kb on + strand, within CA264_01700at 398.884 kb on + strand, within CA264_01700at 398.884 kb on + strand, within CA264_01700at 398.885 kb on - strand, within CA264_01700at 399.000 kb on + strand, within CA264_01700at 399.001 kb on - strand, within CA264_01700at 399.029 kb on + strand, within CA264_01700at 399.031 kb on + strand, within CA264_01700at 399.060 kb on + strand, within CA264_01700at 399.060 kb on + strand, within CA264_01700at 399.061 kb on - strand, within CA264_01700at 399.063 kb on + strand, within CA264_01700at 399.080 kb on + strand, within CA264_01700at 399.080 kb on + strand, within CA264_01700at 399.081 kb on - strand, within CA264_01700at 399.081 kb on - strand, within CA264_01700at 399.085 kb on - strandat 399.109 kb on + strandat 399.109 kb on + strandat 399.112 kb on - strandat 399.154 kb on - strandat 399.184 kb on + strandat 399.199 kb on - strandat 399.199 kb on - strandat 399.246 kb on - strandat 399.259 kb on + strandat 399.270 kb on + strandat 399.274 kb on + strandat 399.297 kb on + strandat 399.315 kb on - strandat 399.315 kb on - strandat 399.315 kb on - strandat 399.315 kb on - strandat 399.338 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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396,435 + +2.5
396,435 + +0.2
396,436 - +1.0
396,453 - +0.1
396,473 - -0.7
396,494 - -1.3
396,521 - -1.4
396,538 + +0.2
396,542 - +0.3
396,576 - +1.1
396,583 + -1.1
396,584 - -0.3
396,608 + +0.7
396,680 + -0.8
396,820 + CA264_01690 0.34 +0.3
396,863 - CA264_01690 0.42 -0.2
396,863 - CA264_01690 0.42 +0.6
396,871 - CA264_01690 0.44 -0.1
397,006 - CA264_01690 0.68 -0.1
397,008 - CA264_01690 0.69 -0.4
397,020 - CA264_01690 0.71 -0.2
397,042 - CA264_01690 0.75 -1.7
397,042 - CA264_01690 0.75 -0.0
397,044 + CA264_01690 0.75 -0.4
397,044 + CA264_01690 0.75 -0.0
397,070 + CA264_01690 0.80 -0.0
397,094 - CA264_01690 0.84 -0.1
397,101 + CA264_01690 0.86 +0.1
397,176 + -0.1
397,189 + -0.0
397,189 + -0.2
397,190 - +0.1
397,240 + +0.1
397,241 - +0.2
397,299 + -0.0
397,516 + CA264_01695 0.27 +0.0
397,516 + CA264_01695 0.27 +0.4
397,571 + CA264_01695 0.32 -1.3
397,571 + CA264_01695 0.32 -0.9
397,571 + CA264_01695 0.32 +0.3
397,572 - CA264_01695 0.32 +0.4
397,572 - CA264_01695 0.32 +0.6
397,572 - CA264_01695 0.32 +2.3
397,573 + CA264_01695 0.32 +0.1
397,573 + CA264_01695 0.32 -1.2
397,718 - CA264_01695 0.44 +0.1
397,725 + CA264_01695 0.45 +0.7
397,725 + CA264_01695 0.45 +0.3
397,725 + CA264_01695 0.45 +1.1
397,754 + CA264_01695 0.47 -0.2
397,766 + CA264_01695 0.49 -1.3
397,768 + CA264_01695 0.49 -1.4
397,768 + CA264_01695 0.49 -0.2
397,769 - CA264_01695 0.49 +0.8
397,825 + CA264_01695 0.54 +0.1
397,826 - CA264_01695 0.54 -0.1
397,870 + CA264_01695 0.57 +0.7
397,870 + CA264_01695 0.57 +1.1
397,870 + CA264_01695 0.57 +0.7
397,870 + CA264_01695 0.57 +0.3
397,875 - CA264_01695 0.58 -0.5
397,907 + CA264_01695 0.60 -0.1
397,908 - CA264_01695 0.61 -0.6
397,994 - CA264_01695 0.68 +0.0
398,010 + CA264_01695 0.69 -1.6
398,011 - CA264_01695 0.69 -0.4
398,012 + CA264_01695 0.69 -1.2
398,012 + CA264_01695 0.69 +0.2
398,061 + CA264_01695 0.74 -0.7
398,068 - CA264_01695 0.74 +0.5
398,115 + CA264_01695 0.78 +0.6
398,116 - +1.6
398,131 - CA264_01695 0.79 -1.3
398,131 - CA264_01695 0.79 +1.6
398,131 - CA264_01695 0.79 -0.3
398,161 + CA264_01695 0.82 -0.1
398,188 + CA264_01695 0.84 +0.2
398,199 + CA264_01695 0.85 -0.3
398,199 + CA264_01695 0.85 +0.0
398,219 - CA264_01695 0.87 -1.8
398,327 + +0.4
398,328 - +2.6
398,328 - +1.2
398,331 - +0.6
398,337 - +2.6
398,371 - -0.7
398,406 + -0.0
398,406 + -0.8
398,483 + CA264_01700 0.11 -1.1
398,483 + CA264_01700 0.11 +0.3
398,484 - CA264_01700 0.11 -1.5
398,493 + CA264_01700 0.12 +0.3
398,493 + CA264_01700 0.12 -1.6
398,493 + CA264_01700 0.12 -0.0
398,493 + CA264_01700 0.12 -2.4
398,493 + CA264_01700 0.12 -0.3
398,493 + CA264_01700 0.12 -0.6
398,494 - CA264_01700 0.13 -0.0
398,494 - CA264_01700 0.13 -0.8
398,498 - CA264_01700 0.13 -0.6
398,506 + CA264_01700 0.14 -0.6
398,593 + CA264_01700 0.26 -0.9
398,594 - CA264_01700 0.26 -0.4
398,594 - CA264_01700 0.26 -0.2
398,630 - CA264_01700 0.30 -0.4
398,694 + CA264_01700 0.39 +1.3
398,695 - CA264_01700 0.39 +0.6
398,695 - CA264_01700 0.39 +0.2
398,695 - CA264_01700 0.39 +0.3
398,695 - CA264_01700 0.39 -0.2
398,729 - CA264_01700 0.43 +2.9
398,861 - CA264_01700 0.61 +0.0
398,880 + CA264_01700 0.63 -0.5
398,881 - CA264_01700 0.64 -0.5
398,884 + CA264_01700 0.64 -0.3
398,884 + CA264_01700 0.64 -0.2
398,884 + CA264_01700 0.64 +0.7
398,885 - CA264_01700 0.64 +1.6
399,000 + CA264_01700 0.79 +0.3
399,001 - CA264_01700 0.79 -0.8
399,029 + CA264_01700 0.83 +0.1
399,031 + CA264_01700 0.83 +0.1
399,060 + CA264_01700 0.87 -1.0
399,060 + CA264_01700 0.87 +0.6
399,061 - CA264_01700 0.87 +0.5
399,063 + CA264_01700 0.87 +0.2
399,080 + CA264_01700 0.90 -0.8
399,080 + CA264_01700 0.90 -1.7
399,081 - CA264_01700 0.90 -0.4
399,081 - CA264_01700 0.90 -0.3
399,085 - -0.2
399,109 + +0.1
399,109 + +0.3
399,112 - +0.2
399,154 - -1.2
399,184 + -0.5
399,199 - -0.1
399,199 - -0.9
399,246 - -1.0
399,259 + -0.9
399,270 + -0.6
399,274 + -1.1
399,297 + -0.2
399,315 - +0.0
399,315 - +0.2
399,315 - -0.2
399,315 - -0.1
399,338 - -3.4

Or see this region's nucleotide sequence