Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01475

Experiment: m.b. Vancomycin 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01465 and CA264_01470 are separated by 94 nucleotidesCA264_01470 and CA264_01475 are separated by 402 nucleotidesCA264_01475 and CA264_01480 are separated by 1 nucleotides CA264_01465: CA264_01465 - 23S ribosomal RNA, at 346,142 to 349,027 _01465 CA264_01470: CA264_01470 - 5S ribosomal RNA, at 349,122 to 349,233 _01470 CA264_01475: CA264_01475 - hypothetical protein, at 349,636 to 351,642 _01475 CA264_01480: CA264_01480 - dihydroorotase, at 351,644 to 352,909 _01480 Position (kb) 349 350 351 352Strain fitness (log2 ratio) -2 -1 0 1 2at 349.567 kb on + strandat 349.580 kb on + strandat 349.588 kb on + strandat 349.588 kb on + strandat 349.588 kb on + strandat 349.589 kb on - strandat 349.626 kb on - strandat 349.636 kb on - strandat 349.646 kb on + strandat 349.646 kb on + strandat 349.646 kb on + strandat 349.646 kb on + strandat 349.646 kb on + strandat 349.648 kb on + strandat 349.648 kb on + strandat 349.722 kb on + strandat 349.730 kb on + strandat 349.755 kb on - strandat 349.923 kb on - strand, within CA264_01475at 349.927 kb on - strand, within CA264_01475at 349.933 kb on + strand, within CA264_01475at 349.933 kb on + strand, within CA264_01475at 349.933 kb on + strand, within CA264_01475at 349.934 kb on - strand, within CA264_01475at 349.935 kb on + strand, within CA264_01475at 349.935 kb on + strand, within CA264_01475at 349.936 kb on - strand, within CA264_01475at 349.936 kb on - strand, within CA264_01475at 349.936 kb on - strand, within CA264_01475at 349.950 kb on - strand, within CA264_01475at 349.950 kb on - strand, within CA264_01475at 349.950 kb on - strand, within CA264_01475at 349.950 kb on - strand, within CA264_01475at 350.102 kb on - strand, within CA264_01475at 350.179 kb on - strand, within CA264_01475at 350.249 kb on + strand, within CA264_01475at 350.322 kb on + strand, within CA264_01475at 350.323 kb on - strand, within CA264_01475at 350.345 kb on + strand, within CA264_01475at 350.399 kb on + strand, within CA264_01475at 350.436 kb on - strand, within CA264_01475at 350.439 kb on + strand, within CA264_01475at 350.439 kb on + strand, within CA264_01475at 350.439 kb on + strand, within CA264_01475at 350.439 kb on + strand, within CA264_01475at 350.442 kb on - strand, within CA264_01475at 350.515 kb on + strand, within CA264_01475at 350.515 kb on + strand, within CA264_01475at 350.519 kb on + strand, within CA264_01475at 350.520 kb on - strand, within CA264_01475at 350.525 kb on + strand, within CA264_01475at 350.557 kb on + strand, within CA264_01475at 350.560 kb on + strand, within CA264_01475at 350.561 kb on - strand, within CA264_01475at 350.671 kb on + strand, within CA264_01475at 350.672 kb on - strand, within CA264_01475at 350.679 kb on + strand, within CA264_01475at 350.687 kb on + strand, within CA264_01475at 350.692 kb on + strand, within CA264_01475at 350.693 kb on - strand, within CA264_01475at 350.724 kb on - strand, within CA264_01475at 350.735 kb on + strand, within CA264_01475at 350.736 kb on - strand, within CA264_01475at 350.836 kb on + strand, within CA264_01475at 350.837 kb on - strand, within CA264_01475at 350.907 kb on + strand, within CA264_01475at 350.929 kb on - strand, within CA264_01475at 351.000 kb on + strand, within CA264_01475at 351.000 kb on + strand, within CA264_01475at 351.000 kb on + strand, within CA264_01475at 351.037 kb on + strand, within CA264_01475at 351.038 kb on - strand, within CA264_01475at 351.039 kb on + strand, within CA264_01475at 351.040 kb on - strand, within CA264_01475at 351.184 kb on + strand, within CA264_01475at 351.185 kb on - strand, within CA264_01475at 351.209 kb on - strand, within CA264_01475at 351.225 kb on + strand, within CA264_01475at 351.225 kb on + strand, within CA264_01475at 351.226 kb on - strand, within CA264_01475at 351.271 kb on + strand, within CA264_01475at 351.271 kb on + strand, within CA264_01475at 351.272 kb on - strand, within CA264_01475at 351.272 kb on - strand, within CA264_01475at 351.332 kb on + strand, within CA264_01475at 351.332 kb on + strand, within CA264_01475at 351.339 kb on + strand, within CA264_01475at 351.402 kb on - strand, within CA264_01475at 351.421 kb on + strand, within CA264_01475at 351.451 kb on + strandat 351.452 kb on - strandat 351.452 kb on - strandat 351.453 kb on + strandat 351.508 kb on + strandat 351.509 kb on - strandat 351.580 kb on + strandat 351.580 kb on + strandat 351.591 kb on - strandat 351.651 kb on + strandat 351.651 kb on + strandat 351.670 kb on + strandat 351.670 kb on + strandat 351.731 kb on - strandat 351.744 kb on + strandat 351.958 kb on + strand, within CA264_01480at 351.959 kb on - strand, within CA264_01480at 351.963 kb on - strand, within CA264_01480at 352.470 kb on + strand, within CA264_01480at 352.470 kb on + strand, within CA264_01480at 352.511 kb on - strand, within CA264_01480

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml
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349,567 + +0.5
349,580 + -0.5
349,588 + -0.0
349,588 + -0.7
349,588 + -1.0
349,589 - -0.8
349,626 - -0.1
349,636 - +0.0
349,646 + +0.4
349,646 + -0.1
349,646 + +0.3
349,646 + -1.1
349,646 + -1.0
349,648 + -2.1
349,648 + +1.5
349,722 + +0.5
349,730 + -0.6
349,755 - -0.3
349,923 - CA264_01475 0.14 -0.2
349,927 - CA264_01475 0.14 +0.5
349,933 + CA264_01475 0.15 +0.2
349,933 + CA264_01475 0.15 -0.7
349,933 + CA264_01475 0.15 +1.3
349,934 - CA264_01475 0.15 -1.8
349,935 + CA264_01475 0.15 +1.0
349,935 + CA264_01475 0.15 -1.1
349,936 - CA264_01475 0.15 -1.5
349,936 - CA264_01475 0.15 +0.0
349,936 - CA264_01475 0.15 +0.0
349,950 - CA264_01475 0.16 -0.1
349,950 - CA264_01475 0.16 -0.7
349,950 - CA264_01475 0.16 -0.9
349,950 - CA264_01475 0.16 -0.3
350,102 - CA264_01475 0.23 -0.8
350,179 - CA264_01475 0.27 -0.2
350,249 + CA264_01475 0.31 -1.0
350,322 + CA264_01475 0.34 -0.3
350,323 - CA264_01475 0.34 +0.1
350,345 + CA264_01475 0.35 +0.3
350,399 + CA264_01475 0.38 -0.3
350,436 - CA264_01475 0.40 +0.0
350,439 + CA264_01475 0.40 -0.5
350,439 + CA264_01475 0.40 -1.7
350,439 + CA264_01475 0.40 -0.1
350,439 + CA264_01475 0.40 -0.7
350,442 - CA264_01475 0.40 -1.6
350,515 + CA264_01475 0.44 +0.2
350,515 + CA264_01475 0.44 +0.6
350,519 + CA264_01475 0.44 -1.0
350,520 - CA264_01475 0.44 -0.7
350,525 + CA264_01475 0.44 -0.8
350,557 + CA264_01475 0.46 +0.4
350,560 + CA264_01475 0.46 -1.1
350,561 - CA264_01475 0.46 -0.5
350,671 + CA264_01475 0.52 +1.6
350,672 - CA264_01475 0.52 +0.4
350,679 + CA264_01475 0.52 +0.9
350,687 + CA264_01475 0.52 -0.2
350,692 + CA264_01475 0.53 +0.3
350,693 - CA264_01475 0.53 -0.1
350,724 - CA264_01475 0.54 +0.3
350,735 + CA264_01475 0.55 -0.8
350,736 - CA264_01475 0.55 -0.2
350,836 + CA264_01475 0.60 -0.4
350,837 - CA264_01475 0.60 -0.1
350,907 + CA264_01475 0.63 +1.3
350,929 - CA264_01475 0.64 -0.6
351,000 + CA264_01475 0.68 -0.5
351,000 + CA264_01475 0.68 -1.7
351,000 + CA264_01475 0.68 +0.1
351,037 + CA264_01475 0.70 +0.5
351,038 - CA264_01475 0.70 -2.7
351,039 + CA264_01475 0.70 -0.7
351,040 - CA264_01475 0.70 -0.2
351,184 + CA264_01475 0.77 -0.9
351,185 - CA264_01475 0.77 -0.7
351,209 - CA264_01475 0.78 -1.1
351,225 + CA264_01475 0.79 -0.5
351,225 + CA264_01475 0.79 +1.3
351,226 - CA264_01475 0.79 +0.6
351,271 + CA264_01475 0.81 -1.0
351,271 + CA264_01475 0.81 -0.5
351,272 - CA264_01475 0.82 -0.1
351,272 - CA264_01475 0.82 -0.3
351,332 + CA264_01475 0.85 -0.9
351,332 + CA264_01475 0.85 -0.3
351,339 + CA264_01475 0.85 -2.4
351,402 - CA264_01475 0.88 -0.8
351,421 + CA264_01475 0.89 -0.4
351,451 + -0.3
351,452 - +0.0
351,452 - -0.1
351,453 + -1.2
351,508 + -0.2
351,509 - -0.7
351,580 + -0.7
351,580 + -0.3
351,591 - -0.5
351,651 + -0.1
351,651 + +0.5
351,670 + +2.2
351,670 + +0.7
351,731 - +0.4
351,744 + +0.4
351,958 + CA264_01480 0.25 -1.1
351,959 - CA264_01480 0.25 +1.0
351,963 - CA264_01480 0.25 -0.6
352,470 + CA264_01480 0.65 -0.6
352,470 + CA264_01480 0.65 -0.4
352,511 - CA264_01480 0.68 +1.2

Or see this region's nucleotide sequence