Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00855 and CA264_00860 are separated by 305 nucleotides CA264_00860 and CA264_00865 are separated by 276 nucleotides
CA264_00855: CA264_00855 - RNA helicase, at 181,610 to 182,752
_00855
CA264_00860: CA264_00860 - CPBP family intramembrane metalloprotease, at 183,058 to 183,930
_00860
CA264_00865: CA264_00865 - dihydroorotate dehydrogenase (quinone), at 184,207 to 185,238
_00865
Position (kb) 183
184 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 182.082 kb on + strand, within CA264_00855 at 182.083 kb on - strand, within CA264_00855 at 182.237 kb on + strand, within CA264_00855 at 182.258 kb on - strand, within CA264_00855 at 182.307 kb on - strand, within CA264_00855 at 182.373 kb on - strand, within CA264_00855 at 182.373 kb on - strand, within CA264_00855 at 182.373 kb on - strand, within CA264_00855 at 182.408 kb on + strand, within CA264_00855 at 182.411 kb on - strand, within CA264_00855 at 182.426 kb on + strand, within CA264_00855 at 182.519 kb on + strand, within CA264_00855 at 182.519 kb on + strand, within CA264_00855 at 182.520 kb on - strand, within CA264_00855 at 182.520 kb on - strand, within CA264_00855 at 182.521 kb on + strand, within CA264_00855 at 182.521 kb on + strand, within CA264_00855 at 182.521 kb on + strand, within CA264_00855 at 182.522 kb on - strand, within CA264_00855 at 182.522 kb on - strand, within CA264_00855 at 182.531 kb on + strand, within CA264_00855 at 182.574 kb on - strand, within CA264_00855 at 182.574 kb on - strand, within CA264_00855 at 182.630 kb on + strand, within CA264_00855 at 182.714 kb on + strand at 182.714 kb on + strand at 182.752 kb on + strand at 182.753 kb on - strand at 182.754 kb on + strand at 182.755 kb on - strand at 182.755 kb on - strand at 182.755 kb on - strand at 182.755 kb on - strand at 182.763 kb on - strand at 182.763 kb on - strand at 182.763 kb on - strand at 182.775 kb on + strand at 182.775 kb on + strand at 182.777 kb on + strand at 182.777 kb on + strand at 182.778 kb on - strand at 182.779 kb on + strand at 182.795 kb on - strand at 182.835 kb on + strand at 182.835 kb on + strand at 182.845 kb on - strand at 182.945 kb on + strand at 182.955 kb on + strand at 182.956 kb on - strand at 182.956 kb on - strand at 182.956 kb on - strand at 182.958 kb on + strand at 182.959 kb on + strand at 182.975 kb on - strand at 183.034 kb on + strand at 183.034 kb on + strand at 183.034 kb on + strand at 183.041 kb on - strand at 183.072 kb on + strand at 183.119 kb on - strand at 183.236 kb on + strand, within CA264_00860 at 183.251 kb on - strand, within CA264_00860 at 183.251 kb on - strand, within CA264_00860 at 183.255 kb on + strand, within CA264_00860 at 183.256 kb on - strand, within CA264_00860 at 183.281 kb on - strand, within CA264_00860 at 183.302 kb on + strand, within CA264_00860 at 183.303 kb on - strand, within CA264_00860 at 183.347 kb on + strand, within CA264_00860 at 183.347 kb on + strand, within CA264_00860 at 183.355 kb on + strand, within CA264_00860 at 183.385 kb on - strand, within CA264_00860 at 183.385 kb on - strand, within CA264_00860 at 183.385 kb on - strand, within CA264_00860 at 183.386 kb on + strand, within CA264_00860 at 183.386 kb on + strand, within CA264_00860 at 183.387 kb on - strand, within CA264_00860 at 183.398 kb on + strand, within CA264_00860 at 183.398 kb on + strand, within CA264_00860 at 183.437 kb on + strand, within CA264_00860 at 183.516 kb on - strand, within CA264_00860 at 183.524 kb on + strand, within CA264_00860 at 183.525 kb on - strand, within CA264_00860 at 183.525 kb on - strand, within CA264_00860 at 183.562 kb on - strand, within CA264_00860 at 183.562 kb on - strand, within CA264_00860 at 183.612 kb on + strand, within CA264_00860 at 183.676 kb on + strand, within CA264_00860 at 183.677 kb on - strand, within CA264_00860 at 183.677 kb on - strand, within CA264_00860 at 183.680 kb on - strand, within CA264_00860 at 183.722 kb on + strand, within CA264_00860 at 183.745 kb on - strand, within CA264_00860 at 183.749 kb on + strand, within CA264_00860 at 183.749 kb on + strand, within CA264_00860 at 183.750 kb on - strand, within CA264_00860 at 183.819 kb on + strand, within CA264_00860 at 183.819 kb on + strand, within CA264_00860 at 183.819 kb on + strand, within CA264_00860 at 183.830 kb on - strand, within CA264_00860 at 183.848 kb on + strand at 183.848 kb on + strand at 183.854 kb on + strand at 183.862 kb on - strand at 183.937 kb on + strand at 183.938 kb on - strand at 183.955 kb on - strand at 183.960 kb on + strand at 183.991 kb on + strand at 183.998 kb on - strand at 183.998 kb on - strand at 183.998 kb on - strand at 183.998 kb on - strand at 183.999 kb on + strand at 183.999 kb on + strand at 183.999 kb on + strand at 184.000 kb on - strand at 184.023 kb on + strand at 184.070 kb on + strand at 184.070 kb on + strand at 184.070 kb on + strand at 184.074 kb on + strand at 184.074 kb on + strand at 184.075 kb on - strand at 184.149 kb on + strand at 184.149 kb on + strand at 184.150 kb on - strand at 184.150 kb on - strand at 184.150 kb on - strand at 184.150 kb on - strand at 184.156 kb on + strand at 184.157 kb on - strand at 184.157 kb on - strand at 184.157 kb on - strand at 184.161 kb on + strand at 184.161 kb on + strand at 184.162 kb on - strand at 184.170 kb on + strand at 184.170 kb on + strand at 184.186 kb on + strand at 184.186 kb on + strand at 184.187 kb on - strand at 184.188 kb on + strand at 184.189 kb on - strand at 184.189 kb on - strand at 184.193 kb on + strand at 184.201 kb on + strand at 184.264 kb on + strand at 184.264 kb on + strand at 184.264 kb on + strand at 184.335 kb on + strand, within CA264_00865 at 184.377 kb on + strand, within CA264_00865 at 184.685 kb on - strand, within CA264_00865 at 184.685 kb on - strand, within CA264_00865 at 184.691 kb on - strand, within CA264_00865 at 184.724 kb on - strand, within CA264_00865
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 182,082 + CA264_00855 0.41 -1.2 182,083 - CA264_00855 0.41 -0.0 182,237 + CA264_00855 0.55 -0.1 182,258 - CA264_00855 0.57 +0.6 182,307 - CA264_00855 0.61 -2.0 182,373 - CA264_00855 0.67 +0.3 182,373 - CA264_00855 0.67 -0.4 182,373 - CA264_00855 0.67 -1.2 182,408 + CA264_00855 0.70 +0.3 182,411 - CA264_00855 0.70 -0.6 182,426 + CA264_00855 0.71 -0.5 182,519 + CA264_00855 0.80 -0.6 182,519 + CA264_00855 0.80 +0.6 182,520 - CA264_00855 0.80 +0.5 182,520 - CA264_00855 0.80 -0.7 182,521 + CA264_00855 0.80 -0.7 182,521 + CA264_00855 0.80 +0.6 182,521 + CA264_00855 0.80 -0.8 182,522 - CA264_00855 0.80 +0.6 182,522 - CA264_00855 0.80 +0.7 182,531 + CA264_00855 0.81 -2.2 182,574 - CA264_00855 0.84 -0.3 182,574 - CA264_00855 0.84 -0.3 182,630 + CA264_00855 0.89 +2.0 182,714 + -0.2 182,714 + -1.2 182,752 + +0.1 182,753 - +0.2 182,754 + -0.8 182,755 - -0.1 182,755 - +0.2 182,755 - +0.1 182,755 - +1.3 182,763 - -0.1 182,763 - -0.0 182,763 - -1.2 182,775 + -1.6 182,775 + -0.0 182,777 + +0.0 182,777 + +0.2 182,778 - +1.0 182,779 + +0.5 182,795 - +0.1 182,835 + -0.2 182,835 + -0.8 182,845 - +3.1 182,945 + -1.4 182,955 + -0.5 182,956 - -1.2 182,956 - +0.2 182,956 - -1.0 182,958 + +0.4 182,959 + -0.5 182,975 - -0.7 183,034 + -1.3 183,034 + +0.1 183,034 + -0.9 183,041 - +0.9 183,072 + +1.6 183,119 - +0.3 183,236 + CA264_00860 0.20 +0.3 183,251 - CA264_00860 0.22 -0.9 183,251 - CA264_00860 0.22 -0.1 183,255 + CA264_00860 0.23 +2.1 183,256 - CA264_00860 0.23 -0.3 183,281 - CA264_00860 0.26 -0.2 183,302 + CA264_00860 0.28 -0.2 183,303 - CA264_00860 0.28 -0.9 183,347 + CA264_00860 0.33 -0.5 183,347 + CA264_00860 0.33 -2.2 183,355 + CA264_00860 0.34 -1.7 183,385 - CA264_00860 0.37 +1.9 183,385 - CA264_00860 0.37 -1.4 183,385 - CA264_00860 0.37 +0.7 183,386 + CA264_00860 0.38 -0.6 183,386 + CA264_00860 0.38 -1.6 183,387 - CA264_00860 0.38 -0.6 183,398 + CA264_00860 0.39 -0.5 183,398 + CA264_00860 0.39 -0.0 183,437 + CA264_00860 0.43 -1.2 183,516 - CA264_00860 0.52 -1.1 183,524 + CA264_00860 0.53 -0.4 183,525 - CA264_00860 0.53 +0.3 183,525 - CA264_00860 0.53 +0.6 183,562 - CA264_00860 0.58 -0.3 183,562 - CA264_00860 0.58 +0.1 183,612 + CA264_00860 0.63 -0.1 183,676 + CA264_00860 0.71 -1.1 183,677 - CA264_00860 0.71 -0.2 183,677 - CA264_00860 0.71 +0.6 183,680 - CA264_00860 0.71 +0.4 183,722 + CA264_00860 0.76 +0.2 183,745 - CA264_00860 0.79 +0.9 183,749 + CA264_00860 0.79 -0.3 183,749 + CA264_00860 0.79 -0.6 183,750 - CA264_00860 0.79 -0.8 183,819 + CA264_00860 0.87 -1.0 183,819 + CA264_00860 0.87 +1.6 183,819 + CA264_00860 0.87 -1.0 183,830 - CA264_00860 0.88 -1.2 183,848 + +0.2 183,848 + -0.9 183,854 + -1.9 183,862 - -0.2 183,937 + -0.8 183,938 - -0.6 183,955 - -0.3 183,960 + -0.3 183,991 + -0.3 183,998 - -0.2 183,998 - -0.7 183,998 - -0.0 183,998 - +0.3 183,999 + -0.8 183,999 + -0.4 183,999 + -0.8 184,000 - +1.6 184,023 + -1.0 184,070 + -0.4 184,070 + +0.1 184,070 + +0.7 184,074 + -0.5 184,074 + -1.0 184,075 - -0.2 184,149 + -1.6 184,149 + +0.1 184,150 - +0.8 184,150 - -0.5 184,150 - -0.6 184,150 - -0.3 184,156 + -1.4 184,157 - -0.9 184,157 - -0.3 184,157 - +0.2 184,161 + +2.1 184,161 + -0.0 184,162 - -0.0 184,170 + -0.9 184,170 + -0.7 184,186 + -0.9 184,186 + -1.4 184,187 - -0.3 184,188 + +0.8 184,189 - -1.9 184,189 - -0.5 184,193 + -0.6 184,201 + -0.5 184,264 + -0.2 184,264 + -1.6 184,264 + -0.7 184,335 + CA264_00865 0.12 -0.5 184,377 + CA264_00865 0.16 -1.0 184,685 - CA264_00865 0.46 -0.3 184,685 - CA264_00865 0.46 +0.3 184,691 - CA264_00865 0.47 +0.1 184,724 - CA264_00865 0.50 +0.8
Or see this region's nucleotide sequence