Experiment: m.b. Vancomycin 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00540 and CA264_00545 are separated by 215 nucleotides CA264_00545 and CA264_00550 are separated by 106 nucleotides
CA264_00540: CA264_00540 - translational GTPase TypA, at 120,492 to 122,300
_00540
CA264_00545: CA264_00545 - peptide-methionine (R)-S-oxide reductase, at 122,516 to 123,064
_00545
CA264_00550: CA264_00550 - heme oxygenase, at 123,171 to 123,947
_00550
Position (kb) 122
123
124 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 121.595 kb on + strand, within CA264_00540 at 121.666 kb on + strand, within CA264_00540 at 121.802 kb on + strand, within CA264_00540 at 121.821 kb on - strand, within CA264_00540 at 121.857 kb on - strand, within CA264_00540 at 121.914 kb on + strand, within CA264_00540 at 121.915 kb on - strand, within CA264_00540 at 121.940 kb on + strand, within CA264_00540 at 121.961 kb on + strand, within CA264_00540 at 122.111 kb on - strand, within CA264_00540 at 122.353 kb on - strand at 122.512 kb on - strand at 122.516 kb on - strand at 122.643 kb on + strand, within CA264_00545 at 122.644 kb on - strand, within CA264_00545 at 122.644 kb on - strand, within CA264_00545 at 122.644 kb on - strand, within CA264_00545 at 122.804 kb on + strand, within CA264_00545 at 122.805 kb on - strand, within CA264_00545 at 123.072 kb on + strand at 123.093 kb on - strand at 123.141 kb on + strand at 123.143 kb on + strand at 123.151 kb on + strand at 123.151 kb on + strand at 123.151 kb on + strand at 123.151 kb on + strand at 123.151 kb on + strand at 123.151 kb on + strand at 123.152 kb on - strand at 123.152 kb on - strand at 123.184 kb on + strand at 123.314 kb on + strand, within CA264_00550 at 123.315 kb on - strand, within CA264_00550 at 123.475 kb on - strand, within CA264_00550 at 123.475 kb on - strand, within CA264_00550 at 123.538 kb on + strand, within CA264_00550 at 123.538 kb on + strand, within CA264_00550 at 123.665 kb on + strand, within CA264_00550 at 123.755 kb on + strand, within CA264_00550 at 123.755 kb on + strand, within CA264_00550 at 123.755 kb on + strand, within CA264_00550 at 123.755 kb on + strand, within CA264_00550 at 123.757 kb on + strand, within CA264_00550 at 123.757 kb on + strand, within CA264_00550 at 123.758 kb on - strand, within CA264_00550 at 123.758 kb on - strand, within CA264_00550 at 123.758 kb on - strand, within CA264_00550 at 123.758 kb on - strand, within CA264_00550 at 123.759 kb on + strand, within CA264_00550 at 123.762 kb on + strand, within CA264_00550 at 123.762 kb on + strand, within CA264_00550 at 123.763 kb on - strand, within CA264_00550 at 124.006 kb on + strand at 124.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.016 mg/ml remove 121,595 + CA264_00540 0.61 -1.3 121,666 + CA264_00540 0.65 -0.8 121,802 + CA264_00540 0.72 -0.9 121,821 - CA264_00540 0.73 -0.5 121,857 - CA264_00540 0.75 -0.1 121,914 + CA264_00540 0.79 +0.4 121,915 - CA264_00540 0.79 -2.2 121,940 + CA264_00540 0.80 -0.3 121,961 + CA264_00540 0.81 -1.5 122,111 - CA264_00540 0.89 +0.1 122,353 - +3.4 122,512 - +0.5 122,516 - -0.2 122,643 + CA264_00545 0.23 -0.7 122,644 - CA264_00545 0.23 -1.6 122,644 - CA264_00545 0.23 +0.7 122,644 - CA264_00545 0.23 -1.2 122,804 + CA264_00545 0.52 -0.4 122,805 - CA264_00545 0.53 -0.3 123,072 + +0.8 123,093 - -1.0 123,141 + -0.3 123,143 + -1.7 123,151 + +0.5 123,151 + -0.3 123,151 + -0.6 123,151 + -0.1 123,151 + +0.9 123,151 + +1.3 123,152 - -0.3 123,152 - +0.9 123,184 + -1.5 123,314 + CA264_00550 0.18 +0.7 123,315 - CA264_00550 0.19 -0.7 123,475 - CA264_00550 0.39 +0.4 123,475 - CA264_00550 0.39 -0.4 123,538 + CA264_00550 0.47 -0.8 123,538 + CA264_00550 0.47 -0.1 123,665 + CA264_00550 0.64 +0.4 123,755 + CA264_00550 0.75 -0.5 123,755 + CA264_00550 0.75 -0.0 123,755 + CA264_00550 0.75 -0.5 123,755 + CA264_00550 0.75 +1.0 123,757 + CA264_00550 0.75 -0.1 123,757 + CA264_00550 0.75 -0.1 123,758 - CA264_00550 0.76 -0.2 123,758 - CA264_00550 0.76 -0.9 123,758 - CA264_00550 0.76 -2.2 123,758 - CA264_00550 0.76 +0.9 123,759 + CA264_00550 0.76 -0.1 123,762 + CA264_00550 0.76 +0.2 123,762 + CA264_00550 0.76 -0.7 123,763 - CA264_00550 0.76 -0.6 124,006 + -0.3 124,007 - +0.5
Or see this region's nucleotide sequence